Rroxscaffold_1G00046510

Proton pump-interactor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
65742139 .. 65748502
6364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046510.1

Sequence Viewer

Length: 1848 bp
ATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTTAGTGAAGGAGAGAATTCCGCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGGCATAATGAGCCCATTAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTTGCGGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTGCCCCTAAGCAGATCCATTCTTTTTATTTCGTCAGGTACCGGACATTTGATGATCCAAAGTTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTCAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGTCCGAGAGATCTGAGTTAATAGAGCAGATTAAGGCTCTGAGATCTGACAACCAGCAAATTAGAAAAATTGCGGATGAGAAATTTAAGGAGATTGAGCCTCTGCAGAAGGATCTCAAAAAGCTCCGCACTGCAGATCATGCTGGTCGCAATGGTGGTTTGTGCTCATCTGAGGAAGAGCTTGATGCTCGGATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCGTTGTCCGAGGAGAAGAAAATCCTTAAAGAGATCAAACAACTTGAAAACACACGTGGAGAAGTCATTGCTAATGCTGCTGTACGAGCCAAGATTCAGGAGTCAGTGGTTCATATAGACAAAGATGCCCTTCAAGACCAGGTTAAACTTATTGGTGGTGATTTGGAGGGAGTAAGGAAAGAGCAACAAGCAGTTAGGTCCAAAATTCAGCAACTTGATGATGCAATTAAGGCCGTAGATAAGCAAATTTCATCAATACGGGATGAGCTGAAGATTGTAACTGATAAGAGGGATCAAGCACAACAGAGCATTTTTACATTTAGGCAGCAGCTTGATCAGCAAAATTCCTCCTTTTACCTAAGCCGTAATATCTTGAACAAAGCGAGAGGTTTGGCTATGAAGAATGATGTTAAAGCACTTGAAGAGCTTACTCATGCAGAGGTGGAGAAATTTATGTCCCAGTGGAATAGTAAAAAGGATTTTAGGGATGATTATGAGAAAAGAATTTTGTCGTCTCTGGATAGTCGGCAATTGACTAGGGATGGACGAATAAGAAACCCAGATGAGAAGCCATTGGTGGTTCATGAAGTGTCCACACCCATAGTAGTAGAGTCGGCAACAAAAGCTAATACAAAACAAGTCAAGGAAGATGGCAGATCTGCTCCATTAGATAGTTTGCCTGTACAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCTTCCAAAATCTACTGTAGATGAAGATGAGGAGATATATGGGCTTGAGAAGCCAAAAAAGGACAGTAAAGAAAGTAAAGTTGATGAAGCAAAGTTGAAGGAGATGAAAAGAGAAGAGGAAATTGCTAAAGCTAAGCAGGCCATGGAAAGGAAGAAGAAAAAGGCAGAGAAAGCTGCAGCTAAAGCAGAAATTAGAGCTAAAAAAGAAGCCGAGAAGAAGTTAAAGGAGCGTGAAAAGAAGGCAAAGAAGAAGGCTACATCGGCAACCGAGAGCAATCCTGATGAGGCAACGGAACCAATTGCTGAAGTTGCAGAACCAGAAAAGGTGAATGAAAATGTTGAAGTTCCGGTCCCTGCTAAGGAGAAGGTGCAAAAGGATAAAACTATCAGGAATAGGGGTCGTCCAAGAGGTCCGGACTCACTTCCGAAAGCCATACTGAAGCGGAAGAAGAGTAATAATTATTGGGTATGGGCAGCTCCTGCAGCTTTGTTGGTTGTGGTGTTTCTAGCACTCGGTTACTACTATCTTCTCTGA

Protein Analysis

615

Amino Acids

69.61

Weight (kDa)

9.17

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccIII TCCGGA 1 cut(s) 1726
AciI CCGC 5 cut(s) 72, 176, 437, 490, 1756
AclWI GGATC 6 cut(s) 139, 223, 263, 483, 563, 894
AcsI RAATTY 8 cut(s) 67, 125, 446, 798, 840, 937, 1043, 1098
AcuI CTGAAG 3 cut(s) 884, 1638, 1772
AcvI CACGTG 1 cut(s) 650
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 4 cut(s) 180, 254, 678, 1278
AfiI CCNNNNNNNGG 2 cut(s) 1461, 1672
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 7 cut(s) 347, 641, 728, 970, 1016, 1411, 1655
AjnI CCWGG 1 cut(s) 732
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 1113
AlwI GGATC 6 cut(s) 139, 223, 263, 483, 563, 894
AlwNI CAGNNNCTG 1 cut(s) 1793
Ama87I CYCGRG 1 cut(s) 336
Aor13HI TCCGGA 1 cut(s) 1726
AoxI GGCC 3 cut(s) 212, 825, 1452
ApeKI GCWGC 7 cut(s) 671, 919, 922, 1487, 1490, 1787, 1796
ApoI RAATTY 8 cut(s) 67, 125, 446, 798, 840, 937, 1043, 1098
Asp718I GGTACC 1 cut(s) 252
AspS9I GGNCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
AsuHPI GGTGA 3 cut(s) 152, 764, 1651
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 7 cut(s) 658, 931, 934, 1474, 1502, 1799, 1808
BccI CCATC 2 cut(s) 1130, 1238
BceAI ACGGC 2 cut(s) 812, 942
BciT130I CCWGG 1 cut(s) 734
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 1 cut(s) 1113
BfaI CTAG 2 cut(s) 1131, 1820
BfmI CTRYAG 5 cut(s) 467, 495, 1329, 1488, 1794
BglII AGATCT 3 cut(s) 374, 407, 1250
BisI GCNGC 7 cut(s) 672, 920, 923, 1488, 1491, 1788, 1797
BlpI GCTNAGC 1 cut(s) 1446
BlsI GCNGC 7 cut(s) 673, 921, 924, 1489, 1492, 1789, 1798
Bme1390I CCNGG 1 cut(s) 734
Bme18I GGWCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
BmiI GGNNCC 3 cut(s) 254, 1608, 1665
BmrFI CCNGG 1 cut(s) 734
BmrI ACTGGG 1 cut(s) 1048
BmsI GCATC 4 cut(s) 187, 538, 709, 805
BmuI ACTGGG 1 cut(s) 1048
Bpu10I CCTNAGC 3 cut(s) 222, 953, 1671
Bpu1102I GCTNAGC 1 cut(s) 1446
BpuEI CTTGAG 2 cut(s) 177, 1379
BsaAI YACGTR 1 cut(s) 650
BsaJI CCNNGG 4 cut(s) 34, 75, 603, 1455
BsaWI WCCGGW 3 cut(s) 255, 1660, 1726
Bsc4I CCNNNNNNNGG 2 cut(s) 1461, 1672
Bse1I ACTGG 3 cut(s) 41, 96, 1054
Bse3DI GCAATG 2 cut(s) 520, 660
BseAI TCCGGA 1 cut(s) 1726
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 4 cut(s) 34, 75, 603, 1455
BseGI GGATG 4 cut(s) 445, 862, 1087, 1141
BseLI CCNNNNNNNGG 2 cut(s) 1461, 1672
BseMI GCAATG 2 cut(s) 520, 660
BseMII CTCAG 3 cut(s) 369, 395, 525
BseNI ACTGG 3 cut(s) 41, 96, 1054
BseRI GAGGAG 2 cut(s) 620, 1358
BseXI GCAGC 7 cut(s) 658, 931, 934, 1474, 1502, 1799, 1808
BshFI GGCC 3 cut(s) 214, 827, 1454
BshNI GGYRCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 530
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 3 cut(s) 256, 1661, 1727
BslFI GGGAC 3 cut(s) 61, 1036, 1649
BslI CCNNNNNNNGG 2 cut(s) 1461, 1672
BsmAI GTCTC 1 cut(s) 1113
BsmBI CGTCTC 1 cut(s) 1113
BsmFI GGGAC 3 cut(s) 61, 1036, 1649
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 3 cut(s) 214, 827, 1454
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 120, 530
Bsp13I TCCGGA 1 cut(s) 1726
Bsp1407I TGTACA 1 cut(s) 1276
Bsp1720I GCTNAGC 1 cut(s) 1446
Bsp19I CCATGG 1 cut(s) 1455
BspACI CCGC 5 cut(s) 72, 176, 437, 490, 1756
BspANI GGCC 3 cut(s) 214, 827, 1454
BspCNI CTCAG 3 cut(s) 370, 396, 526
BspEI TCCGGA 1 cut(s) 1726
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 3 cut(s) 254, 1608, 1665
BspMAI CTGCAG 4 cut(s) 471, 499, 1492, 1798
BspPI GGATC 6 cut(s) 139, 223, 263, 483, 563, 894
BspQI GCTCTTC 2 cut(s) 534, 1011
BspT107I GGYRCC 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 520, 660
BsrGI TGTACA 1 cut(s) 1276
BsrI ACTGG 3 cut(s) 41, 96, 1054
BssECI CCNNGG 4 cut(s) 34, 75, 603, 1455
BssT1I CCWWGG 3 cut(s) 34, 75, 1455
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 3 cut(s) 52, 1330, 1379
Bst6I CTCTTC 4 cut(s) 534, 1011, 1422, 1757
BstAPI GCANNNNNTGC 3 cut(s) 356, 503, 1793
BstAUI TGTACA 1 cut(s) 1276
BstBAI YACGTR 1 cut(s) 650
BstC8I GCNNGC 4 cut(s) 216, 297, 566, 1452
BstDEI CTNAG 7 cut(s) 222, 378, 404, 534, 953, 1446, 1671
BstDSI CCRYGG 1 cut(s) 1455
BstF5I GGATG 4 cut(s) 445, 862, 1087, 1141
BstMAI GTCTC 1 cut(s) 1113
BstNI CCWGG 1 cut(s) 734
BstSCI CCNGG 1 cut(s) 732
BstSFI CTRYAG 5 cut(s) 467, 495, 1329, 1488, 1794
BstV1I GCAGC 7 cut(s) 658, 931, 934, 1474, 1502, 1799, 1808
BstX2I RGATCY 5 cut(s) 228, 374, 407, 475, 1250
BstYI RGATCY 5 cut(s) 228, 374, 407, 475, 1250
BsuRI GGCC 3 cut(s) 214, 827, 1454
BtgI CCRYGG 1 cut(s) 1455
BtsCI GGATG 4 cut(s) 445, 862, 1087, 1141
BtsI GCAGTG 2 cut(s) 492, 1317
BtsIMutI CAGTG 4 cut(s) 492, 705, 1061, 1317
Cac8I GCNNGC 4 cut(s) 216, 297, 566, 1452
CaiI CAGNNNCTG 1 cut(s) 1793
CciI TCATGA 1 cut(s) 1177
Cfr13I GGNCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
CsiI ACCWGGT 1 cut(s) 732
Csp6I GTAC 4 cut(s) 179, 253, 677, 1277
CviAII CATG 6 cut(s) 137, 503, 584, 1028, 1178, 1456
CviQI GTAC 4 cut(s) 179, 253, 677, 1277
DdeI CTNAG 7 cut(s) 222, 378, 404, 534, 953, 1446, 1671
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 4 cut(s) 534, 1011, 1422, 1757
EarI CTCTTC 4 cut(s) 534, 1011, 1422, 1757
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 3 cut(s) 34, 75, 1455
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
Eco57I CTGAAG 3 cut(s) 884, 1638, 1772
Eco72I CACGTG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 732
EcoT14I CCWWGG 3 cut(s) 34, 75, 1455
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 3 cut(s) 34, 75, 1455
Esp3I CGTCTC 1 cut(s) 1113
FaeI CATG 6 cut(s) 140, 506, 587, 1031, 1181, 1459
FalI AAGNNNNNCTT 4 cut(s) 708, 740, 1299, 1331
FaqI GGGAC 3 cut(s) 61, 1036, 1649
FatI CATG 6 cut(s) 136, 502, 583, 1027, 1177, 1455
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 7 cut(s) 672, 920, 923, 1488, 1491, 1788, 1797
FokI GGATG 4 cut(s) 452, 869, 1094, 1148
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 7 cut(s) 672, 920, 923, 1488, 1491, 1788, 1797
FspBI CTAG 2 cut(s) 1131, 1820
GluI GCNGC 7 cut(s) 672, 920, 923, 1488, 1491, 1788, 1797
HaeIII GGCC 3 cut(s) 214, 827, 1454
HapII CCGG 3 cut(s) 256, 1661, 1727
Hin1II CATG 6 cut(s) 140, 506, 587, 1031, 1181, 1459
HinfI GANTC 6 cut(s) 322, 339, 688, 695, 1205, 1730
HpaII CCGG 3 cut(s) 256, 1661, 1727
HphI GGTGA 3 cut(s) 152, 764, 1651
Hpy166II GTNNAC 1 cut(s) 1188
Hpy8I GTNNAC 1 cut(s) 1188
HpyCH4III ACNGT 3 cut(s) 52, 1330, 1379
HpyCH4IV ACGT 1 cut(s) 649
HpyF3I CTNAG 7 cut(s) 222, 378, 404, 534, 953, 1446, 1671
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 6 cut(s) 140, 506, 587, 1031, 1181, 1459
Kpn2I TCCGGA 1 cut(s) 1726
KpnI GGTACC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 928
LguI GCTCTTC 2 cut(s) 534, 1011
LmnI GCTCC 4 cut(s) 492, 1261, 1540, 1795
Lsp1109I GCAGC 7 cut(s) 658, 931, 934, 1474, 1502, 1799, 1808
LweI GCATC 4 cut(s) 187, 538, 709, 805
MabI ACCWGGT 1 cut(s) 732
MaeI CTAG 2 cut(s) 1131, 1820
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 871, 1829
MfeI CAATTG 2 cut(s) 1124, 1611
MflI RGATCY 5 cut(s) 228, 374, 407, 475, 1250
MhlI GDGCHC 2 cut(s) 120, 530
MlyI GAGTC 4 cut(s) 348, 704, 1214, 1724
MroI TCCGGA 1 cut(s) 1726
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 3 cut(s) 256, 1661, 1727
MspR9I CCNGG 1 cut(s) 734
MunI CAATTG 2 cut(s) 1124, 1611
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 1 cut(s) 734
NcoI CCATGG 1 cut(s) 1455
NlaIII CATG 6 cut(s) 140, 506, 587, 1031, 1181, 1459
NlaIV GGNNCC 3 cut(s) 254, 1608, 1665
NmeAIII GCCGAG 1 cut(s) 1549
PaeR7I CTCGAG 1 cut(s) 336
PagI TCATGA 1 cut(s) 1177
PciSI GCTCTTC 2 cut(s) 534, 1011
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 322, 688
PkrI GCNGC 7 cut(s) 673, 921, 924, 1489, 1492, 1789, 1798
PleI GAGTC 4 cut(s) 347, 703, 1213, 1724
PmaCI CACGTG 1 cut(s) 650
PmlI CACGTG 1 cut(s) 650
PpsI GAGTC 4 cut(s) 347, 703, 1213, 1724
Ppu21I YACGTR 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 732
PspCI CACGTG 1 cut(s) 650
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 3 cut(s) 254, 1608, 1665
PspPI GGNCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
PsrI GAACNNNNNNTAC 2 cut(s) 1269, 1301
PstI CTGCAG 4 cut(s) 471, 499, 1492, 1798
PstNI CAGNNNCTG 1 cut(s) 1793
PsuI RGATCY 5 cut(s) 228, 374, 407, 475, 1250
RsaI GTAC 4 cut(s) 180, 254, 678, 1278
RsaNI GTAC 4 cut(s) 179, 253, 677, 1277
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 2 cut(s) 534, 1011
SatI GCNGC 7 cut(s) 672, 920, 923, 1488, 1491, 1788, 1797
Sau96I GGNCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
SchI GAGTC 4 cut(s) 348, 704, 1214, 1724
ScrFI CCNGG 1 cut(s) 734
SduI GDGCHC 2 cut(s) 120, 530
SexAI ACCWGGT 1 cut(s) 732
SfaNI GCATC 4 cut(s) 187, 538, 709, 805
SfcI CTRYAG 5 cut(s) 467, 495, 1329, 1488, 1794
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 3 cut(s) 192, 336, 1358
SmoI CTYRAG 3 cut(s) 192, 336, 1358
SsiI CCGC 5 cut(s) 72, 176, 437, 490, 1756
SspMI CTAG 2 cut(s) 1131, 1820
StyD4I CCNGG 1 cut(s) 732
StyI CCWWGG 3 cut(s) 34, 75, 1455
TaaI ACNGT 3 cut(s) 52, 1330, 1379
TaiI ACGT 1 cut(s) 652
TaqI TCGA 3 cut(s) 9, 331, 337
TatI WGTACW 1 cut(s) 1276
TfiI GAWTC 2 cut(s) 322, 688
TscAI CASTG 4 cut(s) 499, 705, 1061, 1317
TseI GCWGC 7 cut(s) 671, 919, 922, 1487, 1490, 1787, 1796
TspGWI ACGGA 2 cut(s) 585, 1619
TspRI CASTG 4 cut(s) 499, 705, 1061, 1317
VpaK11BI GGWCC 6 cut(s) 31, 38, 366, 792, 1663, 1724
XapI RAATTY 8 cut(s) 67, 125, 446, 798, 840, 937, 1043, 1098
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 336
XspI CTAG 2 cut(s) 1131, 1820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.