FvH4_3g19880

Proton pump-interactor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
13024288 .. 13030349
6062 bp
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UTR
Exon/CDS
Intron
FvH4_3g19880.t1

Sequence Viewer

Length: 1833 bp
ATGGGGATTGAAGATTTGGGATTTGAGAAGGTCCAAGGACCATTGGGTACTGCTAGTGAAGGAGAGAATTCCGCCAAGGAAAATGGGAAACTGGGGGAAGGGCCGGGTCATAAAGAGCCCATAAAATTTGGCTCACATGGTGATGAAATGGTTAAAAAGGAAGGGAATGGGGTTGTGGCACCAAACTTCCCTAAAGATGCAGTTGATGAGTGGCCTGCCCCTAGGCAGATCCATTCCTTTTATTTTGTCAGGCACCGGACATATGATGATCCTAAGTTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTCAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAACACTGAATGCAAAGAGGTCTGAGAGATCTGAGTTAATAGAGCAGATTAAGGCTCTGAGATCTGACAACTATGAAATTAGTAAAATTGTGGGTGAGAAGTTTAAGGAGATTGCGCCCCTACGTCAGGATCTCAAAAAGGTCCGTTCTGCACATGCTAACCACAATGGTGGTTTGTGTTCATCTGAGGTAGAGCTTGATGCTCGGATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCGTTGTCAGAGGAGAAGAAAATTCTGAAAGAGATCAAACAACTTGAAAACACACGTGGAGAAGTCATTGCTAATGCTGTTGTACGAGCCAAGATTCAGGATTCAGTGGTTCATATAAACGAAGATGCCCTTGAAGTGCAGTACAAGCTTGTAGGTGATGATTTGAATGGAGTAAAGAAAGAGCAACAAGCAGTTAGGTCCAAAATTCAGCAACTTGATGATGCAATTAAGGCCGTAGATAAGCAAATTTCATCAATACGGGATGAGCTGAAGATGGTAACTGATAAGAGGGATCAAGCACAACAGAGCATTTATACATTTAGGCAGCAGCTGGATCAGCAAAATGCGTCTTTTTACCTCAGCCGTAATATCTTGAACAAAGCGAGAGGTTTGGCTATCAATAGTGATGTTAAAGCGCTTGAAGAGCTTTCTCATGCAGAGGTTGAGAAATTTATGTCCCAGTGGAATAGTAAAAAAGATTTTAGGGATGATTATGAGAAAAGAATTTTGTCGTCTCTTGATAGTCGGCAACTGAGTAGGGATGGACGCATAAGAAACCCAGATGAGAAGCCATTGGTGGTTCATGAAGTGTCCGCACCCCTAGTAGTAGAGTCGGCAACAAAAGCTAATGCAAAACAAGTCAAGGAAGATGGCACGTCTGCTCCATTAGATAGTTTGCCTGTGCAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCTTCCAAAATCTACTGTAGATGAAGACGAGGAGATATATGGGCTTGAGAAGCCGAAAGAAAGTAAAGTTGATGAAGCAAAGTTGAAGGAGATGAAACGAGAAGAGGAAATTGCTAAAGCTAAGCAGGCCATGGAAAGGAAGAAGAAGAAGGCTGAGAAAGCTGCAGCTAAAGCAGAAATTAAAGCTCAAAAAGAAGCTGAAAAGAAGCTCAAGGACCGTGAAAAGAAGGCAAAGAAGAAGGCTACATCAGCAACTGAAAGCAATCCTGATGAGGCAACGGAGCCAATTGCTGAAGTTGCGGAGCCAGAAAAGGCAACTGAAAATGCTGTAGTTCCAGTCCCTGCCAAGGAGAAGGTGCAAAAAGATAAAACTATCAGGAATAGGGGTCGTCCCAGAGGTCCTGACTCACTTCCGAAAGTTATCCTGAAGCGGAAGAAGAGTAATAATTATTGGGTTTGGGCTGCTCCTGCAGCTTTGTTAGTTCTGGTGTTTCTAGCACTCGGTTACTTCTATCTTCTGTGA

Protein Analysis

611

Amino Acids

68.69

Weight (kDa)

9.18

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 178, 252
AciI CCGC 4 cut(s) 72, 1185, 1610, 1741
AclWI GGATC 6 cut(s) 223, 263, 483, 560, 891, 933
AcsI RAATTY 7 cut(s) 67, 125, 612, 795, 837, 1040, 1095
AcuI CTGAAG 3 cut(s) 881, 1623, 1757
AcvI CACGTG 1 cut(s) 647
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 3 cut(s) 49, 675, 734
AfeI AGCGCT 1 cut(s) 1008
AfiI CCNNNNNNNGG 3 cut(s) 472, 1446, 1657
AflIII ACRYGT 1 cut(s) 644
AgsI TTSAA 8 cut(s) 11, 347, 638, 725, 757, 967, 1013, 1396
AjiI CACGTC 1 cut(s) 1248
AleI CACNNNNGTG 1 cut(s) 513
Alw26I GTCTC 1 cut(s) 1110
AlwI GGATC 6 cut(s) 223, 263, 483, 560, 891, 933
AlwNI CAGNNNCTG 3 cut(s) 922, 1565, 1652
Ama87I CYCGRG 1 cut(s) 336
Aor51HI AGCGCT 1 cut(s) 1008
AoxI GGCC 4 cut(s) 101, 212, 822, 1437
ApeKI GCWGC 6 cut(s) 916, 919, 1472, 1475, 1772, 1781
ApoI RAATTY 7 cut(s) 67, 125, 612, 795, 837, 1040, 1095
AspA2I CCTAGG 1 cut(s) 221
AspLEI GCGC 2 cut(s) 463, 1009
AspS9I GGNCC 7 cut(s) 31, 38, 101, 487, 789, 1525, 1709
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 3 cut(s) 152, 452, 758
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 6 cut(s) 31, 38, 487, 789, 1525, 1709
AvrII CCTAGG 1 cut(s) 221
BanI GGYRCC 2 cut(s) 178, 252
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 1341
BbvCI CCTCAGC 1 cut(s) 950
BbvI GCAGC 6 cut(s) 928, 931, 1459, 1487, 1759, 1793
BccI CCATC 3 cut(s) 859, 1127, 1235
BceAI ACGGC 2 cut(s) 809, 939
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 1110
BfaI CTAG 4 cut(s) 54, 222, 1193, 1805
BfmI CTRYAG 4 cut(s) 1326, 1473, 1638, 1779
BfoI RGCGCY 1 cut(s) 1010
BglII AGATCT 2 cut(s) 374, 407
BisI GCNGC 6 cut(s) 917, 920, 1473, 1476, 1773, 1782
BlnI CCTAGG 1 cut(s) 221
BlpI GCTNAGC 1 cut(s) 1431
BlsI GCNGC 6 cut(s) 918, 921, 1474, 1477, 1774, 1783
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 6 cut(s) 31, 38, 487, 789, 1525, 1709
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 1248
BmgT120I GGNCC 7 cut(s) 31, 38, 101, 487, 789, 1525, 1709
BmiI GGNNCC 4 cut(s) 180, 254, 1593, 1614
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 2 cut(s) 101, 1045
BmsI GCATC 4 cut(s) 187, 535, 706, 802
BmuI ACTGGG 2 cut(s) 101, 1045
BpiI GAAGAC 1 cut(s) 1341
Bpu10I CCTNAGC 1 cut(s) 950
Bpu1102I GCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 1376, 1505
BpuMI CCSGG 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 5 cut(s) 34, 75, 221, 1440, 1656
BsaWI WCCGGW 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 1237, 1267
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 1446, 1657
Bse1I ACTGG 3 cut(s) 96, 1051, 1646
Bse3DI GCAATG 1 cut(s) 657
BseDI CCNNGG 5 cut(s) 34, 75, 221, 1440, 1656
BseGI GGATG 3 cut(s) 859, 1084, 1138
BseLI CCNNNNNNNGG 3 cut(s) 472, 1446, 1657
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 7 cut(s) 360, 369, 395, 522, 964, 1115, 1455
BseNI ACTGG 3 cut(s) 96, 1051, 1646
BseRI GAGGAG 2 cut(s) 617, 1355
BseXI GCAGC 6 cut(s) 928, 931, 1459, 1487, 1759, 1793
BsgI GTGCAG 3 cut(s) 480, 749, 1295
BshFI GGCC 4 cut(s) 103, 214, 824, 1439
BshNI GGYRCC 2 cut(s) 178, 252
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 2 cut(s) 104, 256
BslFI GGGAC 3 cut(s) 1033, 1634, 1686
BslI CCNNNNNNNGG 3 cut(s) 472, 1446, 1657
BsmAI GTCTC 1 cut(s) 1110
BsmBI CGTCTC 1 cut(s) 1110
BsmFI GGGAC 3 cut(s) 1033, 1634, 1686
BsmI GAATGC 2 cut(s) 361, 588
BsnI GGCC 4 cut(s) 103, 214, 824, 1439
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1720I GCTNAGC 1 cut(s) 1431
Bsp19I CCATGG 1 cut(s) 1440
BspACI CCGC 4 cut(s) 72, 1185, 1610, 1741
BspANI GGCC 4 cut(s) 103, 214, 824, 1439
BspCNI CTCAG 7 cut(s) 361, 370, 396, 523, 963, 1116, 1456
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 4 cut(s) 180, 254, 1593, 1614
BspMAI CTGCAG 2 cut(s) 1477, 1783
BspPI GGATC 6 cut(s) 223, 263, 483, 560, 891, 933
BspQI GCTCTTC 1 cut(s) 1008
BspT107I GGYRCC 2 cut(s) 178, 252
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 3 cut(s) 96, 1051, 1646
BssECI CCNNGG 5 cut(s) 34, 75, 221, 1440, 1656
BssT1I CCWWGG 5 cut(s) 34, 75, 221, 1440, 1656
Bst4CI ACNGT 2 cut(s) 1327, 1529
Bst6I CTCTTC 3 cut(s) 1008, 1407, 1742
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 4 cut(s) 216, 297, 563, 1437
BstDEI CTNAG 9 cut(s) 273, 369, 378, 404, 531, 950, 1124, 1431, 1464
BstDSI CCRYGG 1 cut(s) 1440
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 3 cut(s) 859, 1084, 1138
BstH2I RGCGCY 1 cut(s) 1010
BstHHI GCGC 2 cut(s) 463, 1009
BstMAI GTCTC 1 cut(s) 1110
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 4 cut(s) 1326, 1473, 1638, 1779
BstV1I GCAGC 6 cut(s) 928, 931, 1459, 1487, 1759, 1793
BstV2I GAAGAC 1 cut(s) 1341
BstX2I RGATCY 4 cut(s) 228, 374, 407, 475
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 4 cut(s) 228, 374, 407, 475
BsuRI GGCC 4 cut(s) 103, 214, 824, 1439
BtgI CCRYGG 1 cut(s) 1440
BtrI CACGTC 1 cut(s) 1248
BtsCI GGATG 3 cut(s) 859, 1084, 1138
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 4 cut(s) 350, 702, 1058, 1314
Cac8I GCNNGC 4 cut(s) 216, 297, 563, 1437
CaiI CAGNNNCTG 3 cut(s) 922, 1565, 1652
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 2 cut(s) 463, 1009
Cfr13I GGNCC 7 cut(s) 31, 38, 101, 487, 789, 1525, 1709
CseI GACGC 2 cut(s) 927, 1146
Csp6I GTAC 3 cut(s) 48, 674, 733
CviAII CATG 6 cut(s) 137, 500, 581, 1025, 1175, 1441
CviQI GTAC 3 cut(s) 48, 674, 733
DdeI CTNAG 9 cut(s) 273, 369, 378, 404, 531, 950, 1124, 1431, 1464
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 3 cut(s) 1008, 1407, 1742
EarI CTCTTC 3 cut(s) 1008, 1407, 1742
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 5 cut(s) 34, 75, 221, 1440, 1656
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 6 cut(s) 31, 38, 487, 789, 1525, 1709
Eco47III AGCGCT 1 cut(s) 1008
Eco57I CTGAAG 3 cut(s) 881, 1623, 1757
Eco72I CACGTG 1 cut(s) 647
Eco88I CYCGRG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 1709
EcoRI GAATTC 1 cut(s) 67
EcoT14I CCWWGG 5 cut(s) 34, 75, 221, 1440, 1656
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 5 cut(s) 34, 75, 221, 1440, 1656
Esp3I CGTCTC 1 cut(s) 1110
FaeI CATG 6 cut(s) 140, 503, 584, 1028, 1178, 1444
FalI AAGNNNNNCTT 4 cut(s) 705, 737, 1296, 1328
FaqI GGGAC 3 cut(s) 1033, 1634, 1686
FatI CATG 6 cut(s) 136, 499, 580, 1024, 1174, 1440
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 917, 920, 1473, 1476, 1773, 1782
FokI GGATG 3 cut(s) 866, 1091, 1145
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 917, 920, 1473, 1476, 1773, 1782
FspBI CTAG 4 cut(s) 54, 222, 1193, 1805
GlaI GCGC 2 cut(s) 462, 1008
GluI GCNGC 6 cut(s) 917, 920, 1473, 1476, 1773, 1782
HaeII RGCGCY 1 cut(s) 1010
HaeIII GGCC 4 cut(s) 103, 214, 824, 1439
HapII CCGG 2 cut(s) 104, 256
HgaI GACGC 2 cut(s) 927, 1146
HhaI GCGC 2 cut(s) 463, 1009
Hin1II CATG 6 cut(s) 140, 503, 584, 1028, 1178, 1444
Hin6I GCGC 2 cut(s) 461, 1007
HinP1I GCGC 2 cut(s) 461, 1007
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 6 cut(s) 322, 339, 685, 692, 1202, 1715
HpaII CCGG 2 cut(s) 104, 256
HphI GGTGA 3 cut(s) 152, 452, 758
HpyCH4III ACNGT 2 cut(s) 1327, 1529
HpyCH4IV ACGT 3 cut(s) 469, 646, 1247
HpyF3I CTNAG 9 cut(s) 273, 369, 378, 404, 531, 950, 1124, 1431, 1464
HpySE526I ACGT 3 cut(s) 469, 646, 1247
Hsp92II CATG 6 cut(s) 140, 503, 584, 1028, 1178, 1444
HspAI GCGC 2 cut(s) 461, 1007
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 4 cut(s) 1258, 1591, 1612, 1780
Lsp1109I GCAGC 6 cut(s) 928, 931, 1459, 1487, 1759, 1793
LweI GCATC 4 cut(s) 187, 535, 706, 802
MaeI CTAG 4 cut(s) 54, 222, 1193, 1805
MaeII ACGT 3 cut(s) 469, 646, 1247
MaeIII GTNAC 2 cut(s) 868, 1814
MfeI CAATTG 1 cut(s) 1596
MflI RGATCY 4 cut(s) 228, 374, 407, 475
MhlI GDGCHC 1 cut(s) 120
MlyI GAGTC 3 cut(s) 348, 1211, 1709
MseI TTAA 8 cut(s) 153, 278, 383, 396, 450, 819, 1002, 1491
MslI CAYNNNNRTG 2 cut(s) 141, 513
MspA1I CMGCKG 1 cut(s) 922
MspI CCGG 2 cut(s) 104, 256
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 1596
Mva1269I GAATGC 2 cut(s) 361, 588
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 1 cut(s) 1440
NdeI CATATG 1 cut(s) 262
NlaIII CATG 6 cut(s) 140, 503, 584, 1028, 1178, 1444
NlaIV GGNNCC 4 cut(s) 180, 254, 1593, 1614
NspI RCATGY 1 cut(s) 503
OliI CACNNNNGTG 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 336
PagI TCATGA 1 cut(s) 1174
PciSI GCTCTTC 1 cut(s) 1008
PctI GAATGC 2 cut(s) 361, 588
PfeI GAWTC 3 cut(s) 322, 685, 692
PkrI GCNGC 6 cut(s) 918, 921, 1474, 1477, 1774, 1783
PleI GAGTC 3 cut(s) 347, 1210, 1709
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 3 cut(s) 347, 1210, 1709
Ppu21I YACGTR 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 1709
Psp5II RGGWCCY 1 cut(s) 1709
PspCI CACGTG 1 cut(s) 647
PspN4I GGNNCC 4 cut(s) 180, 254, 1593, 1614
PspPI GGNCC 7 cut(s) 31, 38, 101, 487, 789, 1525, 1709
PspPPI RGGWCCY 1 cut(s) 1709
PstI CTGCAG 2 cut(s) 1477, 1783
PstNI CAGNNNCTG 3 cut(s) 922, 1565, 1652
PsuI RGATCY 4 cut(s) 228, 374, 407, 475
PvuII CAGCTG 1 cut(s) 922
RsaI GTAC 3 cut(s) 49, 675, 734
RsaNI GTAC 3 cut(s) 48, 674, 733
RseI CAYNNNNRTG 2 cut(s) 141, 513
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 8 cut(s) 153, 278, 383, 396, 450, 819, 1002, 1491
SatI GCNGC 6 cut(s) 917, 920, 1473, 1476, 1773, 1782
Sau96I GGNCC 7 cut(s) 31, 38, 101, 487, 789, 1525, 1709
SchI GAGTC 3 cut(s) 348, 1211, 1709
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 4 cut(s) 187, 535, 706, 802
SfcI CTRYAG 4 cut(s) 1326, 1473, 1638, 1779
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 6 cut(s) 31, 38, 487, 789, 1525, 1709
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 141, 513
SmlI CTYRAG 3 cut(s) 336, 1355, 1520
SmoI CTYRAG 3 cut(s) 336, 1355, 1520
SsiI CCGC 4 cut(s) 72, 1185, 1610, 1741
SspMI CTAG 4 cut(s) 54, 222, 1193, 1805
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 5 cut(s) 34, 75, 221, 1440, 1656
TaaI ACNGT 2 cut(s) 1327, 1529
TaiI ACGT 3 cut(s) 472, 649, 1250
TaqI TCGA 2 cut(s) 331, 337
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 3 cut(s) 322, 685, 692
Tru1I TTAA 8 cut(s) 153, 278, 383, 396, 450, 819, 1002, 1491
Tru9I TTAA 8 cut(s) 153, 278, 383, 396, 450, 819, 1002, 1491
TscAI CASTG 4 cut(s) 357, 702, 1058, 1314
TseI GCWGC 6 cut(s) 916, 919, 1472, 1475, 1772, 1781
TspGWI ACGGA 3 cut(s) 479, 582, 1604
TspRI CASTG 4 cut(s) 357, 702, 1058, 1314
VpaK11BI GGWCC 6 cut(s) 31, 38, 487, 789, 1525, 1709
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 7 cut(s) 67, 125, 612, 795, 837, 1040, 1095
XceI RCATGY 1 cut(s) 503
XhoI CTCGAG 1 cut(s) 336
XmaJI CCTAGG 1 cut(s) 221
XspI CTAG 4 cut(s) 54, 222, 1193, 1805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.