MD11G1247800.v1.1

Proton pump-interactor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
35978866 .. 35984085
5220 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1247800.v1.1.491

Sequence Viewer

Length: 1830 bp
ATGGGTGTTGAAGTTGTGGGATTTGAGGTGATCCAAGGACCAGTGGGGGCTGTCACTGAAGGAGGGAATTCTGCCAAGGAAAATGGAAAATTGGATCAAGGTCCGGGCGGTAATGAGCCCATACAGTTTGGATCGCATGGTGATGAATCAGACAAAAAGGAAGTCAATGAGGTTTCGGTTCCAAACTTCCCCAAGGATGCAGTTGACGAGTGGCCTGCTCCCAAGCAGATCCATTCTTTCTATTTTGTTAGGCACCGGACAATCGACGATCCAAAAATAAAAGTGAGGATTGATCATGCTTCTAAAGAGGTGAATGAGAGGAACAAAGCTCGTCAAGACATCATTGAAGCACTACGAGCAAAAAGGACTGAAAGATCAGAATTGATTGAGAAGATTAAGGCTCTGAGGAATGACAACAGGCAAATTAGGTCAATTGTGGATGAGAAGTTTAAGGATTTACAGCCTCTGCGGCAGGCTCTTGGAGAGATACGCAGTGCAGACACTGCTAGTCGCAGTGGTGGTTTATGTTCATCAGAGGAAGAGCTTAACAGTCGTATCCAAGGGTTGCAGTATTATATGCAACATGAGAGCATTCCATTGTCCGAGGAAAAGAAAATACTTAAAGAGATGAAGGCTCTTGAGAACACAAGGGGACAAGTTATTGCTCGTGAAGCTGAGCTAGCTAAACTGCTTCCTAAAGAAGCCCTCAAGGACCAAGTTAAACTTATGGATGGTGACTTAAAGGAAGTAAAAAAGGAGCAAGATGGTGTTAGGGCCAAAATTAAGCACCTTGATGATGCAGTGAAGGTGATTGACAAGGCAATTGCATCATTACAGGAAGATCTGGACATTGTAACTGAGAAGAGGGATAAAGCATTCGAAAATATTCGTCAACTTAGGTTACAGACTGATCAGGCGAATGCTGGCTTCTACCATAGCCGTGGGGTCATGACCAAAGCTAGAAATCTTGCTGCTACCAACAATGTCAAAGCACTTGAAGCACTTTCTAATGAAGAGGTCGAGAAATTTATGTCCCTCTGGAACAGTAACAAGGATTTTAGAGATGATTATGAGAAAAGAATTTTGCCATCTCTGGACAGCCGTCAAATGAGTAGGGATGGACGTATAAGAAACCCAGATGAGAAGCCATTGGTGGTTGTGGAAGCACCTGTGGTAGAGACAGCACCAAAATCTAATGCAAAACAAGTTAAGGAAGATACCAGATCTGCTCTGCCAGATACTTCGACTGCACAGAAGGTTCAGAAAGAAGCCAAAAATAAAGCAACTGCTCCTAAATCTGCTGCAGAGCATATTGATATGGCTGACGAGGAAATATTTGTTTCTGAAAAGGAGATCCTAAAAGAAAAGAAAATTGATCCGGCGAAGTTGAAGGAGATGAAAAGAGAAGAGGAGATAGAAAAAAATAAGCTGGCCTTGGAGAGGAAGAAGAAGAAGGCAGAGAAAGATGCAGCTAAAGCAGCTATTAGAGCTCAAAAGGAAGCCGAGAAGAAGCTGAAGGAGCGTGAAAAGAAGGCAAAGAAGAAGTCATCATCTGCCCCGGATACCAATCCTGAGGAACTGATAGAACCAGTTGCTGAGGTTGCAGAACCAGAAAAGGTAACTGAAAAGGTTGAAGCTCCTGTCCCGGCAAAGGCAAAGGCGCAAAAGGATAACAGTCTGAGGAACAGAGGTCGAGCAAGAGGTTCAGACGCACTACCAAAAGCCATCCTGAAGAGGAAGAAGTCGAGTACAAACTATTGGCTATGGGCTGCTCCTGCTGCTGTGTTAGTTGTGTTGTTTCTAGTACTGGGTTACTACTATCTTCATTGA

Protein Analysis

610

Amino Acids

68.61

Weight (kDa)

9.08

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7121 PF23435 99 - 315 5.4e-06 Family of unknown function (DUF7121)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AciI CCGC 2 cut(s) 108, 469
AclWI GGATC 7 cut(s) 25, 102, 139, 223, 263, 1348, 1370
AcsI RAATTY 3 cut(s) 67, 1025, 1080
AcuI CTGAAG 3 cut(s) 78, 1535, 1751
AfaI GTAC 2 cut(s) 1750, 1806
AfiI CCNNNNNNNGG 2 cut(s) 1440, 1651
AgsI TTSAA 5 cut(s) 11, 347, 998, 1390, 1634
Alw21I GWGCWC 1 cut(s) 1492
Alw26I GTCTC 1 cut(s) 1172
AlwI GGATC 7 cut(s) 25, 102, 139, 223, 263, 1348, 1370
AlwNI CAGNNNCTG 3 cut(s) 466, 503, 1595
AoxI GGCC 3 cut(s) 212, 774, 1431
ApeKI GCWGC 6 cut(s) 971, 1301, 1469, 1478, 1769, 1778
ApoI RAATTY 3 cut(s) 67, 1025, 1080
ArsI GACNNNNNNTTYG 4 cut(s) 147, 179, 1529, 1561
Asp700I GAANNNNTTC 1 cut(s) 885
AspLEI GCGC 1 cut(s) 1663
AspS9I GGNCC 4 cut(s) 38, 101, 712, 774
AsuC2I CCSGG 3 cut(s) 105, 1559, 1646
AsuHPI GGTGA 5 cut(s) 40, 152, 322, 746, 820
AsuII TTCGAA 1 cut(s) 879
AsuNHI GCTAGC 1 cut(s) 679
AvaII GGWCC 3 cut(s) 38, 101, 712
AxyI CCTNAGG 1 cut(s) 1572
BaeI ACNNNNGTAYC 2 cut(s) 538, 571
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 2 cut(s) 120, 1492
BauI CACGAG 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 1492
BbvCI CCTCAGC 1 cut(s) 1596
BbvI GCAGC 6 cut(s) 958, 1288, 1481, 1490, 1756, 1765
BccI CCATC 5 cut(s) 725, 758, 1096, 1112, 1733
BceAI ACGGC 2 cut(s) 924, 1086
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciVI GTATCC 2 cut(s) 566, 1555
BclI TGATCA 2 cut(s) 292, 910
BcnI CCSGG 3 cut(s) 105, 1559, 1646
BcoDI GTCTC 1 cut(s) 1172
BfaI CTAG 4 cut(s) 507, 680, 960, 1802
BfmI CTRYAG 1 cut(s) 1302
BfuI GTATCC 2 cut(s) 566, 1555
BglI GCCNNNNNGGC 1 cut(s) 469
BglII AGATCT 2 cut(s) 841, 1223
BisI GCNGC 7 cut(s) 470, 972, 1302, 1470, 1479, 1770, 1779
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 7 cut(s) 471, 973, 1303, 1471, 1480, 1771, 1780
BmcAI AGTACT 1 cut(s) 1806
Bme1390I CCNGG 3 cut(s) 105, 1559, 1646
Bme18I GGWCC 3 cut(s) 38, 101, 712
BmgT120I GGNCC 4 cut(s) 38, 101, 712, 774
BmiI GGNNCC 2 cut(s) 180, 254
BmrFI CCNGG 3 cut(s) 105, 1559, 1646
BmrI ACTGGG 1 cut(s) 1817
BmsI GCATC 4 cut(s) 187, 787, 836, 1456
BmtI GCTAGC 1 cut(s) 683
BmuI ACTGGG 1 cut(s) 1817
BoxI GACNNNNGTC 1 cut(s) 1101
Bpu10I CCTNAGC 1 cut(s) 1596
Bpu1102I GCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 879
BpuEI CTTGAG 2 cut(s) 659, 692
BpuMI CCSGG 3 cut(s) 105, 1559, 1646
BsaBI GATNNNNATC 1 cut(s) 1566
BsaJI CCNNGG 8 cut(s) 34, 75, 192, 559, 603, 940, 1434, 1557
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 1440, 1651
Bse1I ACTGG 3 cut(s) 41, 1589, 1812
Bse21I CCTNAGG 1 cut(s) 1572
Bse8I GATNNNNATC 1 cut(s) 1566
BseDI CCNNGG 8 cut(s) 34, 75, 192, 559, 603, 940, 1434, 1557
BseGI GGATG 5 cut(s) 202, 445, 736, 1123, 1725
BseJI GATNNNNATC 1 cut(s) 1566
BseLI CCNNNNNNNGG 2 cut(s) 1440, 1651
BseMII CTCAG 6 cut(s) 395, 666, 849, 1563, 1587, 1670
BseNI ACTGG 3 cut(s) 41, 1589, 1812
BseRI GAGGAG 1 cut(s) 1424
BseXI GCAGC 6 cut(s) 958, 1288, 1481, 1490, 1756, 1765
BsgI GTGCAG 2 cut(s) 516, 1233
BshFI GGCC 3 cut(s) 214, 776, 1433
BshNI GGYRCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 1492
BsiSI CCGG 5 cut(s) 104, 256, 1379, 1559, 1646
BslFI GGGAC 3 cut(s) 666, 1018, 1628
BslI CCNNNNNNNGG 2 cut(s) 1440, 1651
BsmAI GTCTC 1 cut(s) 1172
BsmFI GGGAC 3 cut(s) 666, 1018, 1628
BsmI GAATGC 3 cut(s) 591, 875, 925
BsnI GGCC 3 cut(s) 214, 776, 1433
Bsp119I TTCGAA 1 cut(s) 879
Bsp1286I GDGCHC 2 cut(s) 120, 1492
Bsp1720I GCTNAGC 1 cut(s) 675
BspACI CCGC 2 cut(s) 108, 469
BspANI GGCC 3 cut(s) 214, 776, 1433
BspCNI CTCAG 6 cut(s) 396, 667, 850, 1564, 1588, 1671
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 2 cut(s) 180, 254
BspMAI CTGCAG 1 cut(s) 1306
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 7 cut(s) 25, 102, 139, 223, 263, 1348, 1370
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 879
BspT107I GGYRCC 1 cut(s) 252
BsrI ACTGG 3 cut(s) 41, 1589, 1812
BssECI CCNNGG 8 cut(s) 34, 75, 192, 559, 603, 940, 1434, 1557
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 5 cut(s) 34, 75, 192, 559, 1434
Bst2BI CACGAG 1 cut(s) 666
Bst4CI ACNGT 4 cut(s) 126, 551, 1046, 1676
Bst6I CTCTTC 5 cut(s) 534, 857, 1008, 1401, 1727
BstAPI GCANNNNNTGC 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 879
BstC8I GCNNGC 5 cut(s) 216, 474, 681, 925, 1431
BstDEI CTNAG 7 cut(s) 404, 675, 858, 896, 1572, 1596, 1679
BstDSI CCRYGG 1 cut(s) 940
BstENI CCTNNNNNAGG 1 cut(s) 1438
BstF5I GGATG 5 cut(s) 202, 445, 736, 1123, 1725
BstHHI GCGC 1 cut(s) 1663
BstMAI GTCTC 1 cut(s) 1172
BstPAI GACNNNNGTC 1 cut(s) 1101
BstSCI CCNGG 3 cut(s) 103, 1557, 1644
BstSFI CTRYAG 1 cut(s) 1302
BstV1I GCAGC 6 cut(s) 958, 1288, 1481, 1490, 1756, 1765
BstX2I RGATCY 4 cut(s) 228, 841, 1223, 1353
BstXI CCANNNNNNTGG 1 cut(s) 941
BstYI RGATCY 4 cut(s) 228, 841, 1223, 1353
Bsu36I CCTNAGG 1 cut(s) 1572
BsuI GTATCC 2 cut(s) 566, 1555
BsuRI GGCC 3 cut(s) 214, 776, 1433
BtgI CCRYGG 1 cut(s) 940
BtsCI GGATG 5 cut(s) 202, 445, 736, 1123, 1725
BtsI GCAGTG 4 cut(s) 499, 501, 520, 807
BtsIMutI CAGTG 6 cut(s) 48, 54, 499, 501, 520, 807
Cac8I GCNNGC 5 cut(s) 216, 474, 681, 925, 1431
CaiI CAGNNNCTG 3 cut(s) 466, 503, 1595
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 1663
Cfr13I GGNCC 4 cut(s) 38, 101, 712, 774
CseI GACGC 1 cut(s) 1718
Csp6I GTAC 2 cut(s) 1749, 1805
CviAII CATG 4 cut(s) 137, 296, 584, 949
CviQI GTAC 2 cut(s) 1749, 1805
DdeI CTNAG 7 cut(s) 404, 675, 858, 896, 1572, 1596, 1679
Eam1104I CTCTTC 5 cut(s) 534, 857, 1008, 1401, 1727
EarI CTCTTC 5 cut(s) 534, 857, 1008, 1401, 1727
Ecl136II GAGCTC 1 cut(s) 1490
Eco130I CCWWGG 5 cut(s) 34, 75, 192, 559, 1434
Eco24I GRGCYC 2 cut(s) 120, 1492
Eco47I GGWCC 3 cut(s) 38, 101, 712
Eco53kI GAGCTC 1 cut(s) 1490
Eco57I CTGAAG 3 cut(s) 78, 1535, 1751
Eco81I CCTNAGG 1 cut(s) 1572
EcoICRI GAGCTC 1 cut(s) 1490
EcoNI CCTNNNNNAGG 1 cut(s) 1438
EcoRI GAATTC 1 cut(s) 67
EcoT14I CCWWGG 5 cut(s) 34, 75, 192, 559, 1434
EcoT38I GRGCYC 2 cut(s) 120, 1492
ErhI CCWWGG 5 cut(s) 34, 75, 192, 559, 1434
FaeI CATG 4 cut(s) 140, 299, 587, 952
FalI AAGNNNNNCTT 4 cut(s) 708, 740, 1418, 1450
FaqI GGGAC 3 cut(s) 666, 1018, 1628
FatI CATG 4 cut(s) 136, 295, 583, 948
FbaI TGATCA 2 cut(s) 292, 910
Fnu4HI GCNGC 7 cut(s) 470, 972, 1302, 1470, 1479, 1770, 1779
FokI GGATG 5 cut(s) 209, 452, 743, 1130, 1712
FriOI GRGCYC 2 cut(s) 120, 1492
Fsp4HI GCNGC 7 cut(s) 470, 972, 1302, 1470, 1479, 1770, 1779
FspBI CTAG 4 cut(s) 507, 680, 960, 1802
GlaI GCGC 1 cut(s) 1662
GluI GCNGC 7 cut(s) 470, 972, 1302, 1470, 1479, 1770, 1779
HaeIII GGCC 3 cut(s) 214, 776, 1433
HapII CCGG 5 cut(s) 104, 256, 1379, 1559, 1646
HgaI GACGC 1 cut(s) 1718
HhaI GCGC 1 cut(s) 1663
Hin1II CATG 4 cut(s) 140, 299, 587, 952
Hin6I GCGC 1 cut(s) 1661
HinP1I GCGC 1 cut(s) 1661
HincII GTYRAC 2 cut(s) 205, 893
HindII GTYRAC 2 cut(s) 205, 893
HinfI GANTC 1 cut(s) 146
HpaII CCGG 5 cut(s) 104, 256, 1379, 1559, 1646
HphI GGTGA 5 cut(s) 40, 152, 322, 746, 820
Hpy166II GTNNAC 2 cut(s) 205, 893
Hpy188I TCNGA 9 cut(s) 151, 379, 405, 535, 604, 1263, 1345, 1680, 1708
Hpy8I GTNNAC 2 cut(s) 205, 893
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 8 cut(s) 53, 625, 799, 1249, 1384, 1447, 1510, 1525
HpyCH4III ACNGT 4 cut(s) 126, 551, 1046, 1676
HpyCH4IV ACGT 1 cut(s) 1123
HpyF3I CTNAG 7 cut(s) 404, 675, 858, 896, 1572, 1596, 1679
HpySE526I ACGT 1 cut(s) 1123
Hsp92II CATG 4 cut(s) 140, 299, 587, 952
HspAI GCGC 1 cut(s) 1661
Ksp22I TGATCA 2 cut(s) 292, 910
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 6 cut(s) 223, 757, 1294, 1519, 1642, 1777
Lsp1109I GCAGC 6 cut(s) 958, 1288, 1481, 1490, 1756, 1765
LweI GCATC 4 cut(s) 187, 787, 836, 1456
MaeI CTAG 4 cut(s) 507, 680, 960, 1802
MaeII ACGT 1 cut(s) 1123
MaeIII GTNAC 7 cut(s) 52, 734, 853, 900, 1046, 1618, 1811
MfeI CAATTG 2 cut(s) 432, 822
MflI RGATCY 4 cut(s) 228, 841, 1223, 1353
MhlI GDGCHC 2 cut(s) 120, 1492
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 8 cut(s) 396, 450, 546, 621, 720, 740, 783, 1209
MslI CAYNNNNRTG 3 cut(s) 141, 792, 939
MspI CCGG 5 cut(s) 104, 256, 1379, 1559, 1646
MspR9I CCNGG 3 cut(s) 105, 1559, 1646
MunI CAATTG 2 cut(s) 432, 822
Mva1269I GAATGC 3 cut(s) 591, 875, 925
NciI CCSGG 3 cut(s) 105, 1559, 1646
NheI GCTAGC 1 cut(s) 679
NlaIII CATG 4 cut(s) 140, 299, 587, 952
NlaIV GGNNCC 2 cut(s) 180, 254
NmeAIII GCCGAG 1 cut(s) 1528
NmuCI GTSAC 2 cut(s) 52, 734
NspV TTCGAA 1 cut(s) 879
PagI TCATGA 1 cut(s) 948
PciSI GCTCTTC 1 cut(s) 534
PctI GAATGC 3 cut(s) 591, 875, 925
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 7 cut(s) 471, 973, 1303, 1471, 1480, 1771, 1780
PshAI GACNNNNGTC 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 1492
PspN4I GGNNCC 2 cut(s) 180, 254
PspPI GGNCC 4 cut(s) 38, 101, 712, 774
PstI CTGCAG 1 cut(s) 1306
PstNI CAGNNNCTG 3 cut(s) 466, 503, 1595
PsuI RGATCY 4 cut(s) 228, 841, 1223, 1353
RsaI GTAC 2 cut(s) 1750, 1806
RsaNI GTAC 2 cut(s) 1749, 1805
RseI CAYNNNNRTG 3 cut(s) 141, 792, 939
SacI GAGCTC 1 cut(s) 1492
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 8 cut(s) 396, 450, 546, 621, 720, 740, 783, 1209
SatI GCNGC 7 cut(s) 470, 972, 1302, 1470, 1479, 1770, 1779
Sau96I GGNCC 4 cut(s) 38, 101, 712, 774
ScaI AGTACT 1 cut(s) 1806
ScrFI CCNGG 3 cut(s) 105, 1559, 1646
SduI GDGCHC 2 cut(s) 120, 1492
SfaNI GCATC 4 cut(s) 187, 787, 836, 1456
SfcI CTRYAG 1 cut(s) 1302
SfuI TTCGAA 1 cut(s) 879
SinI GGWCC 3 cut(s) 38, 101, 712
SmiMI CAYNNNNRTG 3 cut(s) 141, 792, 939
SmlI CTYRAG 2 cut(s) 638, 707
SmoI CTYRAG 2 cut(s) 638, 707
SsiI CCGC 2 cut(s) 108, 469
SspI AATATT 2 cut(s) 886, 1335
SspMI CTAG 4 cut(s) 507, 680, 960, 1802
SstI GAGCTC 1 cut(s) 1492
StyD4I CCNGG 3 cut(s) 103, 1557, 1644
StyI CCWWGG 5 cut(s) 34, 75, 192, 559, 1434
TaaI ACNGT 4 cut(s) 126, 551, 1046, 1676
TaiI ACGT 1 cut(s) 1126
TaqI TCGA 6 cut(s) 264, 879, 1020, 1244, 1693, 1745
TatI WGTACW 2 cut(s) 1748, 1804
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 8 cut(s) 396, 450, 546, 621, 720, 740, 783, 1209
Tru9I TTAA 8 cut(s) 396, 450, 546, 621, 720, 740, 783, 1209
TscAI CASTG 6 cut(s) 48, 61, 499, 508, 520, 807
TseFI GTSAC 2 cut(s) 52, 734
TseI GCWGC 6 cut(s) 971, 1301, 1469, 1478, 1769, 1778
Tsp45I GTSAC 2 cut(s) 52, 734
TspDTI ATGAA 6 cut(s) 159, 519, 644, 1026, 1412, 1814
TspRI CASTG 6 cut(s) 48, 61, 499, 508, 520, 807
VpaK11BI GGWCC 3 cut(s) 38, 101, 712
XagI CCTNNNNNAGG 1 cut(s) 1438
XapI RAATTY 3 cut(s) 67, 1025, 1080
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 4 cut(s) 507, 680, 960, 1802
ZrmI AGTACT 1 cut(s) 1806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.