Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008759

Physical Location & Seq

Genomic Coordinates Reverse (-)

27206730 .. 27211618

Gene Structure 4889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTTAGTGAAGGAGAGAATTCCGCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGGCATAATGAGCCCATAAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTTGCGGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTGCCCCTAAGCAGATCCATTCTTTTTATTTCGTCAGGTACCGGACATTTGATGATCCAAAGTTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTCAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGAATGCCTCCTTTTACCTAAGCCGTAATATCTTGAACAAAGCGAGAGGTTTGGCTATGAAGAATGATGTTAAAGCACTTGAAGAGCTTACTCATGCAGAGGTGGAGAAATTTATGTCCCAGTGGAATAGTAAAAAGGATTTTCGGGATGATTATGAGAAAAGAATTTTGTCGTCTCTGGATAGTCGGCAATTGAGTAGGGATGGACGAATAAGAAACCCAGATGAGAAGCCGTTGGTGGTTCATGAAGTGTCCACACCTATAGTAGTAGAGTCGGCAACAAAAGCTAATACAAAACAAGTCAAGGAAGATGGCAGATCTGCTCCATTAGATAGTTTGCCTGTACAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCTTCCAAAATCTACTGTAGATGAAGACGAGGAGATATATGGGCTTGAGAAGCCGAAAAAGGACAGTAAAGAAAGTAAAGTTGATGAAGCAAAGTTGAAGGAGATGAAAAGAGAAGAGGAAATTGCTAAAGCTAAGCAGGCCATGGAAAGGAAGAAGAAAAAGGCAGAGAAAGCTGCAGCTAAAGCAGAAATTAGAGCTCAAAAAGAAGCCGAAAAGAAGCTCAAGGAGCGTGAAAAGAAGGCAAAGAAGAAGGCTACATCTGCAACTGAGAACAATCCTGATGAGGCAACGGAACCAATTGCTGAAGTTGCAGAACCAGAAATACCTAATGTTGAAGTTCCGGTCCCTGCTAAGGAGAAGGTGCAAAAGGATAAAACTATCAGGAATAGGGGTCGTCCAAGAGGTCCAGACTCACTTCCGAAAGCCATACTGAAGCGGAAGAAGAGTAATAATTATTGGGTATGGGCTGCTCCTGCTGCTTTGTTGGTTGTGGTGTTTCTAGCACTGGGTTACTACTATCTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

47.65

Weight (kDa)

9.35

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27500 AT4G27500
fragaria_vesca	FvH4_3g19880 FvH4_3g19880 FvH4_3g19880 FvH4_3g19880
malus_domestica	MD03G1228300.v1.1 MD11G1247800.v1.1
prunus_persica	Prupe.4G180600_v2.0.a1
pyrus_communis	pycom03g17570 pycom11g22030
rosa_chinensis	RchiOBHm_Chr5g0033561
rosa_laevigata	RLG00000033478 RLG00000033484
rosa_multiflora	Rmu_sc0003286.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046510
rosa_rugosa	Rorug05G0139600 Rorug05G0140000
rosa_samantha	Rh5AG231700 Rh5BG232500 Rh5CG261200 Rh5DG238000
rosa_wichuraiana	Rw5G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AciI	CCGC	3 cut(s)	72, 176, 1180
AclWI	GGATC	3 cut(s)	139, 223, 263
AcsI	RAATTY	4 cut(s)	67, 125, 473, 528
AcuI	CTGAAG	2 cut(s)	1068, 1196
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	180, 254, 708
AfiI	CCNNNNNNNGG	2 cut(s)	891, 1096
AgsI	TTSAA	5 cut(s)	347, 400, 446, 841, 1079
AluBI	AGCT	7 cut(s)	451, 650, 875, 917, 923, 941, 964
AluI	AGCT	7 cut(s)	451, 650, 875, 917, 923, 941, 964
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	3 cut(s)	139, 223, 263
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	212, 882
ApeKI	GCWGC	4 cut(s)	917, 920, 1211, 1220
ApoI	RAATTY	4 cut(s)	67, 125, 473, 528
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	31, 38, 1087, 1148
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	4 cut(s)	31, 38, 1087, 1148
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	120, 943
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	4 cut(s)	904, 932, 1198, 1207
BccI	CCATC	2 cut(s)	560, 668
BceAI	ACGGC	2 cut(s)	372, 580
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	1244
BfmI	CTRYAG	3 cut(s)	624, 759, 918
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	4 cut(s)	918, 921, 1212, 1221
BlpI	GCTNAGC	1 cut(s)	876
BlsI	GCNGC	4 cut(s)	919, 922, 1213, 1222
Bme18I	GGWCC	4 cut(s)	31, 38, 1087, 1148
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	4 cut(s)	31, 38, 1087, 1148
BmiI	GGNNCC	3 cut(s)	254, 1038, 1089
BmrI	ACTGGG	2 cut(s)	478, 1259
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	2 cut(s)	478, 1259
BpiI	GAAGAC	1 cut(s)	774
Bpu10I	CCTNAGC	3 cut(s)	222, 383, 1095
Bpu1102I	GCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	3 cut(s)	177, 809, 950
BsaJI	CCNNGG	3 cut(s)	34, 75, 885
BsaWI	WCCGGW	2 cut(s)	255, 1084
Bsc4I	CCNNNNNNNGG	2 cut(s)	891, 1096
Bse1I	ACTGG	4 cut(s)	41, 96, 484, 1254
BseDI	CCNNGG	3 cut(s)	34, 75, 885
BseGI	GGATG	2 cut(s)	517, 571
BseLI	CCNNNNNNNGG	2 cut(s)	891, 1096
BseMII	CTCAG	1 cut(s)	1002
BseNI	ACTGG	4 cut(s)	41, 96, 484, 1254
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	4 cut(s)	904, 932, 1198, 1207
BshFI	GGCC	2 cut(s)	214, 884
BshNI	GGYRCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	943
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	256, 1085
BslFI	GGGAC	3 cut(s)	61, 466, 1073
BslI	CCNNNNNNNGG	2 cut(s)	891, 1096
BsmAI	GTCTC	1 cut(s)	543
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	3 cut(s)	61, 466, 1073
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	214, 884
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	120, 943
Bsp1407I	TGTACA	1 cut(s)	706
Bsp143I	GATC	5 cut(s)	131, 228, 268, 332, 680
Bsp1720I	GCTNAGC	1 cut(s)	876
Bsp19I	CCATGG	1 cut(s)	885
BspACI	CCGC	3 cut(s)	72, 176, 1180
BspANI	GGCC	2 cut(s)	214, 884
BspCNI	CTCAG	1 cut(s)	1003
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	3 cut(s)	254, 1038, 1089
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	3 cut(s)	139, 223, 263
BspQI	GCTCTTC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	706
BsrI	ACTGG	4 cut(s)	41, 96, 484, 1254
BssECI	CCNNGG	3 cut(s)	34, 75, 885
BssMI	GATC	5 cut(s)	131, 228, 268, 332, 680
BssT1I	CCWWGG	3 cut(s)	34, 75, 885
Bst4CI	ACNGT	3 cut(s)	52, 760, 809
Bst6I	CTCTTC	3 cut(s)	441, 852, 1181
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	706
BstC8I	GCNNGC	3 cut(s)	216, 297, 882
BstDEI	CTNAG	5 cut(s)	222, 383, 876, 1011, 1095
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	2 cut(s)	517, 571
BstKTI	GATC	5 cut(s)	134, 231, 271, 335, 683
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	5 cut(s)	131, 228, 268, 332, 680
BstSFI	CTRYAG	3 cut(s)	624, 759, 918
BstV1I	GCAGC	4 cut(s)	904, 932, 1198, 1207
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	2 cut(s)	228, 680
BstYI	RGATCY	2 cut(s)	228, 680
BsuRI	GGCC	2 cut(s)	214, 884
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	2 cut(s)	517, 571
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	491, 747, 1247
Cac8I	GCNNGC	3 cut(s)	216, 297, 882
CciI	TCATGA	1 cut(s)	607
Cfr13I	GGNCC	4 cut(s)	31, 38, 1087, 1148
Csp6I	GTAC	3 cut(s)	179, 253, 707
CviAII	CATG	4 cut(s)	137, 458, 608, 886
CviQI	GTAC	3 cut(s)	179, 253, 707
DdeI	CTNAG	5 cut(s)	222, 383, 876, 1011, 1095
DpnI	GATC	5 cut(s)	133, 230, 270, 334, 682
DpnII	GATC	5 cut(s)	131, 228, 268, 332, 680
DraIII	CACNNNGTG	1 cut(s)	140
Eam1104I	CTCTTC	3 cut(s)	441, 852, 1181
EarI	CTCTTC	3 cut(s)	441, 852, 1181
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	941
Eco130I	CCWWGG	3 cut(s)	34, 75, 885
Eco24I	GRGCYC	2 cut(s)	120, 943
Eco47I	GGWCC	4 cut(s)	31, 38, 1087, 1148
Eco53kI	GAGCTC	1 cut(s)	941
Eco57I	CTGAAG	2 cut(s)	1068, 1196
Eco88I	CYCGRG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	67
EcoT14I	CCWWGG	3 cut(s)	34, 75, 885
EcoT38I	GRGCYC	2 cut(s)	120, 943
ErhI	CCWWGG	3 cut(s)	34, 75, 885
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	4 cut(s)	140, 461, 611, 889
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	3 cut(s)	61, 466, 1073
FatI	CATG	4 cut(s)	136, 457, 607, 885
Fnu4HI	GCNGC	4 cut(s)	918, 921, 1212, 1221
FokI	GGATG	2 cut(s)	524, 578
FriOI	GRGCYC	2 cut(s)	120, 943
Fsp4HI	GCNGC	4 cut(s)	918, 921, 1212, 1221
FspBI	CTAG	1 cut(s)	1244
GluI	GCNGC	4 cut(s)	918, 921, 1212, 1221
HaeIII	GGCC	2 cut(s)	214, 884
HapII	CCGG	2 cut(s)	256, 1085
Hin1II	CATG	4 cut(s)	140, 461, 611, 889
HinfI	GANTC	4 cut(s)	322, 339, 635, 1154
HpaII	CCGG	2 cut(s)	256, 1085
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	4 cut(s)	315, 720, 1164, 1271
Hpy188III	TCNNGA	9 cut(s)	194, 336, 397, 509, 542, 608, 1022, 1126, 1151
Hpy8I	GTNNAC	1 cut(s)	618
HpyAV	CCTTC	9 cut(s)	22, 53, 92, 155, 706, 835, 976, 988, 1096
HpyCH4III	ACNGT	3 cut(s)	52, 760, 809
HpyCH4V	TGCA	7 cut(s)	200, 359, 461, 920, 1007, 1055, 1108
HpyF3I	CTNAG	5 cut(s)	222, 383, 876, 1011, 1095
Hsp92II	CATG	4 cut(s)	140, 461, 611, 889
KpnI	GGTACC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	131, 228, 268, 332, 680
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	3 cut(s)	691, 970, 1219
Lsp1109I	GCAGC	4 cut(s)	904, 932, 1198, 1207
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	1244
MaeIII	GTNAC	1 cut(s)	1253
MalI	GATC	5 cut(s)	133, 230, 270, 334, 682
MboI	GATC	5 cut(s)	131, 228, 268, 332, 680
MfeI	CAATTG	2 cut(s)	554, 1041
MflI	RGATCY	2 cut(s)	228, 680
MhlI	GDGCHC	2 cut(s)	120, 943
MlyI	GAGTC	3 cut(s)	348, 644, 1148
MnlI	CCTC	9 cut(s)	201, 357, 382, 404, 457, 766, 853, 1021, 1139
MseI	TTAA	3 cut(s)	278, 353, 435
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	2 cut(s)	256, 1085
MunI	CAATTG	2 cut(s)	554, 1041
Mva1269I	GAATGC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	5 cut(s)	131, 228, 268, 332, 680
NlaIII	CATG	4 cut(s)	140, 461, 611, 889
NlaIV	GGNNCC	3 cut(s)	254, 1038, 1089
PaeR7I	CTCGAG	1 cut(s)	336
PagI	TCATGA	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	4 cut(s)	919, 922, 1213, 1222
PleI	GAGTC	3 cut(s)	347, 643, 1148
PpsI	GAGTC	3 cut(s)	347, 643, 1148
Psp124BI	GAGCTC	1 cut(s)	943
PspN4I	GGNNCC	3 cut(s)	254, 1038, 1089
PspPI	GGNCC	4 cut(s)	31, 38, 1087, 1148
PsrI	GAACNNNNNNTAC	4 cut(s)	699, 731, 1050, 1082
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	2 cut(s)	228, 680
RsaI	GTAC	3 cut(s)	180, 254, 708
RsaNI	GTAC	3 cut(s)	179, 253, 707
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	943
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	278, 353, 435
SatI	GCNGC	4 cut(s)	918, 921, 1212, 1221
Sau3AI	GATC	5 cut(s)	131, 228, 268, 332, 680
Sau96I	GGNCC	4 cut(s)	31, 38, 1087, 1148
SchI	GAGTC	3 cut(s)	348, 644, 1148
SduI	GDGCHC	2 cut(s)	120, 943
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	3 cut(s)	624, 759, 918
Sfr274I	CTCGAG	1 cut(s)	336
SinI	GGWCC	4 cut(s)	31, 38, 1087, 1148
SlaI	CTCGAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	4 cut(s)	192, 336, 788, 965
SmoI	CTYRAG	4 cut(s)	192, 336, 788, 965
SsiI	CCGC	3 cut(s)	72, 176, 1180
SspMI	CTAG	1 cut(s)	1244
SstI	GAGCTC	1 cut(s)	943
StyI	CCWWGG	3 cut(s)	34, 75, 885
TaaI	ACNGT	3 cut(s)	52, 760, 809
TaqI	TCGA	3 cut(s)	9, 331, 337
TatI	WGTACW	1 cut(s)	706
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	278, 353, 435
Tru9I	TTAA	3 cut(s)	278, 353, 435
TscAI	CASTG	3 cut(s)	491, 747, 1254
TseI	GCWGC	4 cut(s)	917, 920, 1211, 1220
TspDTI	ATGAA	7 cut(s)	159, 437, 596, 624, 780, 843, 863
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	3 cut(s)	491, 747, 1254
VpaK11BI	GGWCC	4 cut(s)	31, 38, 1087, 1148
XapI	RAATTY	4 cut(s)	67, 125, 473, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	336
XspI	CTAG	1 cut(s)	1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.