Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Reverse (-)

13826374 .. 13827928

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCACTTACTTCAATAGCCACGCCTTACCCATCTTCATCGCAGGCTTTGCGTCTGAAATCCTCCGGAAACACTCTTTTCTCTGCCGGAGTTCGATCGGCAGCAATGGTTTCCGGTCACAAAACGCTTAAGATTCAATGCACTTCAACCAAACCTGCCAAACCTGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTATTGGAGAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCAACGGTTACAAAAAGAAAACAACTTTGTGATTCTTGATGTAAGACCAGAGGCAGAGTACAAGGCGGGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTCATAAGGGAATGGACGGCATGGGACATAGCTCGCCGTCTTGGCTTTGCTTTCTTTGGTATCTTCTCTGGCACAGAAGAGAACCCTGAGTTTATTCAAAGTGTAGAAGCTAAACTTGACAAAGAGGCAAAGATCATAGTAGCTTGTTCATCCGCGGGTACAATGAAGCCGACACAAAATCTTCCCGAAGGCCAACAATCGAGGTCTCTCATAGCTGCTTATCTTCTGGTCCTTAACGGCTATAAGAACGTATTTCACCTAGAAGGTGGAATCTACACATGGGGCAAGGAAGGTCTTCCTGTTGAAACAATTGAAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

224

Amino Acids

24.87

Weight (kDa)

8.78

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	79 - 213	3.7e-15	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	166, 175
AccII	CGCG	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	3 cut(s)	311, 504, 506
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	3 cut(s)	305, 347, 511
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	6 cut(s)	18, 140, 150, 449, 656, 665
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	8 cut(s)	173, 202, 245, 329, 383, 461, 494, 566
AluI	AGCT	8 cut(s)	173, 202, 245, 329, 383, 461, 494, 566
Alw26I	GTCTC	2 cut(s)	181, 561
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	3 cut(s)	104, 170, 566
Asp700I	GAANNNNTTC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	232, 599
AvaII	GGWCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	116, 182, 553
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	3 cut(s)	372, 384, 604
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	181, 561
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	2 cut(s)	166, 175
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	3 cut(s)	105, 171, 567
BlsI	GCNGC	3 cut(s)	106, 172, 568
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	580
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	580
BmrFI	CCNGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	2 cut(s)	68, 116
Bse3DI	GCAATG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	316, 500
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	116, 182, 553
Bsh1236I	CGCG	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	69, 90, 117, 323
BslFI	GGGAC	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	181, 561
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	543
Bso31I	GGTCTC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	98, 483
BspACI	CCGC	3 cut(s)	311, 504, 506
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	506
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	2 cut(s)	166, 175
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	98, 483
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	2 cut(s)	188, 423
BstAFI	CTTAAG	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	48, 385
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	316, 500
BstFNI	CGCG	1 cut(s)	506
BstKTI	GATC	2 cut(s)	101, 486
BstMAI	GTCTC	2 cut(s)	181, 561
BstMBI	GATC	2 cut(s)	98, 483
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 167, 393
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	116, 182, 553
BstV2I	GAAGAC	1 cut(s)	638
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	316, 500
BveI	ACCTGC	2 cut(s)	166, 175
Cac8I	GCNNGC	2 cut(s)	48, 385
Cfr13I	GGNCC	1 cut(s)	580
Cfr42I	CCGCGG	1 cut(s)	507
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	304, 346, 510
CviAII	CATG	2 cut(s)	372, 630
CviQI	GTAC	3 cut(s)	304, 346, 510
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	100, 485
DpnII	GATC	2 cut(s)	98, 483
Eam1104I	CTCTTC	2 cut(s)	188, 423
EarI	CTCTTC	2 cut(s)	188, 423
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	195
FaeI	CATG	2 cut(s)	375, 633
FaiI	YATR	7 cut(s)	356, 373, 380, 488, 563, 594, 631
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	371, 629
FauI	CCCGC	2 cut(s)	304, 499
Fnu4HI	GCNGC	3 cut(s)	105, 171, 567
FokI	GGATG	2 cut(s)	303, 487
Fsp4HI	GCNGC	3 cut(s)	105, 171, 567
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	3 cut(s)	105, 171, 567
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	4 cut(s)	69, 90, 117, 323
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	375, 633
HinfI	GANTC	4 cut(s)	136, 277, 351, 621
HpaII	CCGG	4 cut(s)	69, 90, 117, 323
HphI	GGTGA	2 cut(s)	232, 599
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	69, 281, 536
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	232, 533, 608, 635
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	2 cut(s)	234, 600
HpyCH4V	TGCA	2 cut(s)	144, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 167, 393
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	2 cut(s)	234, 600
Hsp92II	CATG	2 cut(s)	375, 633
Kpn2I	TCCGGA	1 cut(s)	68
KspI	CCGCGG	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	98, 483
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	3 cut(s)	116, 182, 553
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	2 cut(s)	234, 600
MaeIII	GTNAC	2 cut(s)	119, 252
MalI	GATC	2 cut(s)	100, 485
MboI	GATC	2 cut(s)	98, 483
MboII	GAAGA	7 cut(s)	30, 205, 406, 440, 524, 566, 638
MfeI	CAATTG	1 cut(s)	660
MluCI	AATT	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	76, 289, 330, 469, 546
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	2 cut(s)	132, 585
MspA1I	CMGCKG	2 cut(s)	173, 506
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	4 cut(s)	69, 90, 117, 323
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	52, 167, 393
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	98, 483
NlaIII	CATG	2 cut(s)	375, 633
NmuCI	GTSAC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	136, 277, 621
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	106, 172, 568
Ple19I	CGATCG	1 cut(s)	101
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	305, 347, 511
RsaNI	GTAC	3 cut(s)	304, 346, 510
SacII	CCGCGG	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	132, 585
SatI	GCNGC	3 cut(s)	105, 171, 567
Sau3AI	GATC	2 cut(s)	98, 483
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	168
Sfr303I	CCGCGG	1 cut(s)	507
SgrBI	CCGCGG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	580
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	660
SsiI	CCGC	3 cut(s)	311, 504, 506
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	2 cut(s)	237, 603
TaqI	TCGA	3 cut(s)	97, 180, 551
TasI	AATT	1 cut(s)	660
TatI	WGTACW	2 cut(s)	303, 345
TfiI	GAWTC	3 cut(s)	136, 277, 621
Tru1I	TTAA	2 cut(s)	132, 585
Tru9I	TTAA	2 cut(s)	132, 585
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	104, 170, 566
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	30, 489, 530
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.