Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Forward (+)

26757916 .. 26759214

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTTCTCTGACTTCGATCACACTGAACCAATCTTCTTCTTCCCCATTGGGATCATTGGCTTCAAAGCATTGTCACCATAACCAGAATTCCTGCTGGGTTACAGCCGTCGGATCAGTCAGATCATCATCATCAGCATCCACAAGGCAACGGTTTTCGTCACAGGGCCTCAGAATCCGTAGTGCAGCAACAAAACAAGCCAAAACGCCAGCTGAAGAGGACTGGAAGACTAAGAGGGAGCTTCTCCTACAGAAAAAGGTGAGGAGTGTGGATGTGAAAGAAGCTCTGAGGCTTCAAAAAGAAAACAACTTTGTGATTCTTGACGTGCGCCCTGAAGCGGAATTCAGAGAGGCTCATCCGGCGGGGGCAATCAACGTGCAAATATACAGGCTTATAAAGGAGTGGACAGCATGGGACATTGCCCGCCGTGCTGCTTTTGCATTTTTCGGCATCTTTGCCGGCACAGAAGAGAACCCAGAGTTCATATCAAGTGTGGAATCGCAGCTAGATAAGAAGGCAAAGATAATAGTGGCTTGTGCCGCCGGCGGTACGATGAAACCGACCCAAAATCTCCCAGAAGGTCAACAGTCAAGATCATTGATAGCAGCCTACTTGCTCGTCCTCAACGGTTACACGAATGTCTTCCACTTAGACGGCGGACTTTATGCGTGGTTTAAGGAGGAGCTGCCATCGGTCGCGGAAGAAGAAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

239

Amino Acids

26.41

Weight (kDa)

8.4

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccII	CGCG	1 cut(s)	698
AciI	CCGC	7 cut(s)	338, 362, 424, 540, 546, 657, 698
AclWI	GGATC	2 cut(s)	61, 121
AcsI	RAATTY	2 cut(s)	88, 341
AcuI	CTGAAG	2 cut(s)	234, 354
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	66, 296
AjiI	CACGTC	1 cut(s)	325
AluBI	AGCT	5 cut(s)	212, 241, 284, 505, 685
AluI	AGCT	5 cut(s)	212, 241, 284, 505, 685
AlwI	GGATC	2 cut(s)	61, 121
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	5 cut(s)	185, 431, 502, 605, 685
ApoI	RAATTY	2 cut(s)	88, 341
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	68, 271
BbsI	GAAGAC	2 cut(s)	233, 634
BbvI	GCAGC	5 cut(s)	197, 418, 514, 617, 672
BccI	CCATC	1 cut(s)	697
BceAI	ACGGC	3 cut(s)	92, 411, 670
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	6 cut(s)	186, 432, 503, 540, 606, 686
BlsI	GCNGC	6 cut(s)	187, 433, 504, 541, 607, 687
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	146, 459
BpiI	GAAGAC	2 cut(s)	233, 634
BsaBI	GATNNNNATC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	2 cut(s)	458, 542
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	127
BseGI	GGATG	3 cut(s)	137, 277, 355
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	184, 278
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	277, 695
BseXI	GCAGC	5 cut(s)	197, 418, 514, 617, 672
BseYI	CCCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	696
BsiSI	CCGG	3 cut(s)	359, 459, 543
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	18, 53, 113, 122, 593
BspACI	CCGC	7 cut(s)	338, 362, 424, 540, 546, 657, 698
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	183, 279
BspFNI	CGCG	1 cut(s)	698
BspPI	GGATC	2 cut(s)	61, 121
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	2 cut(s)	458, 542
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	2 cut(s)	458, 542
BssMI	GATC	5 cut(s)	18, 53, 113, 122, 593
Bst4CI	ACNGT	3 cut(s)	153, 588, 629
Bst6I	CTCTTC	3 cut(s)	210, 462, 705
BstC8I	GCNNGC	4 cut(s)	210, 424, 460, 544
BstDEI	CTNAG	4 cut(s)	170, 231, 287, 649
BstF5I	GGATG	3 cut(s)	137, 277, 355
BstFNI	CGCG	1 cut(s)	698
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	5 cut(s)	21, 56, 116, 125, 596
BstMBI	GATC	5 cut(s)	18, 53, 113, 122, 593
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 428, 437, 539
BstSFI	CTRYAG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	5 cut(s)	197, 418, 514, 617, 672
BstV2I	GAAGAC	2 cut(s)	233, 634
BsuRI	GGCC	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	137, 277, 355
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	4 cut(s)	210, 424, 460, 544
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	2 cut(s)	458, 542
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	1 cut(s)	411
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	4 cut(s)	170, 231, 287, 649
DpnI	GATC	5 cut(s)	20, 55, 115, 124, 595
DpnII	GATC	5 cut(s)	18, 53, 113, 122, 593
Eam1104I	CTCTTC	3 cut(s)	210, 462, 705
EarI	CTCTTC	3 cut(s)	210, 462, 705
EciI	GGCGGA	1 cut(s)	672
Eco57I	CTGAAG	2 cut(s)	234, 354
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	2 cut(s)	88, 341
FaeI	CATG	1 cut(s)	414
FaiI	YATR	6 cut(s)	81, 385, 395, 412, 485, 666
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	410
FauI	CCCGC	2 cut(s)	355, 431
Fnu4HI	GCNGC	6 cut(s)	186, 432, 503, 540, 606, 686
FokI	GGATG	3 cut(s)	124, 284, 342
Fsp4HI	GCNGC	6 cut(s)	186, 432, 503, 540, 606, 686
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	6 cut(s)	186, 432, 503, 540, 606, 686
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	3 cut(s)	359, 459, 543
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	174, 316, 497
HpaII	CCGG	3 cut(s)	359, 459, 543
HphI	GGTGA	2 cut(s)	68, 271
Hpy166II	GTNNAC	2 cut(s)	405, 584
Hpy188I	TCNGA	6 cut(s)	12, 113, 122, 173, 288, 347
Hpy188III	TCNNGA	2 cut(s)	320, 591
Hpy8I	GTNNAC	2 cut(s)	405, 584
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	508, 572
HpyCH4III	ACNGT	3 cut(s)	153, 588, 629
HpyCH4IV	ACGT	2 cut(s)	324, 375
HpyCH4V	TGCA	3 cut(s)	185, 379, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 428, 437, 539
HpyF3I	CTNAG	4 cut(s)	170, 231, 287, 649
HpySE526I	ACGT	2 cut(s)	324, 375
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	328
KroI	GCCGGC	2 cut(s)	458, 542
KroNI	GCCGGC	2 cut(s)	460, 544
Kzo9I	GATC	5 cut(s)	18, 53, 113, 122, 593
LmnI	GCTCC	2 cut(s)	238, 682
Lsp1109I	GCAGC	5 cut(s)	197, 418, 514, 617, 672
LweI	GCATC	2 cut(s)	146, 459
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	324, 375
MaeIII	GTNAC	4 cut(s)	74, 100, 159, 629
MalI	GATC	5 cut(s)	20, 55, 115, 124, 595
MboI	GATC	5 cut(s)	18, 53, 113, 122, 593
MboII	GAAGA	9 cut(s)	27, 30, 33, 227, 238, 479, 634, 713, 716
MluCI	AATT	2 cut(s)	88, 341
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	8 cut(s)	179, 211, 228, 255, 282, 343, 632, 673
MreI	CGCCGGCG	1 cut(s)	542
MroNI	GCCGGC	2 cut(s)	458, 542
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	359, 459, 543
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	4 cut(s)	359, 428, 437, 539
NaeI	GCCGGC	2 cut(s)	460, 544
NdeII	GATC	5 cut(s)	18, 53, 113, 122, 593
NgoMIV	GCCGGC	2 cut(s)	458, 542
NlaIII	CATG	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	74, 159
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PdiI	GCCGGC	2 cut(s)	460, 544
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	174, 316, 497
PkrI	GCNGC	6 cut(s)	187, 433, 504, 541, 607, 687
PsiI	TTATAA	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	6 cut(s)	186, 432, 503, 540, 606, 686
Sau3AI	GATC	5 cut(s)	18, 53, 113, 122, 593
Sau96I	GGNCC	1 cut(s)	166
SetI	ASST	9 cut(s)	214, 243, 261, 286, 327, 378, 507, 583, 687
SfaNI	GCATC	2 cut(s)	146, 459
SfcI	CTRYAG	1 cut(s)	248
SgrAI	CRCCGGYG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	88, 341
SsiI	CCGC	7 cut(s)	338, 362, 424, 540, 546, 657, 698
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	3 cut(s)	153, 588, 629
TaiI	ACGT	2 cut(s)	327, 378
TaqI	TCGA	1 cut(s)	17
TaqII	GACCGA	1 cut(s)	682
TasI	AATT	2 cut(s)	88, 341
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	3 cut(s)	174, 316, 497
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	74, 159
TseI	GCWGC	5 cut(s)	185, 431, 502, 605, 685
Tsp45I	GTSAC	2 cut(s)	74, 159
TspDTI	ATGAA	2 cut(s)	472, 569
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	2 cut(s)	88, 341
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.