RchiOBHm_Chr1g0381981

Rhodanese-like domain-containing protein 14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008416
Physical Location & Seq
Forward (+)
67056965 .. 67058438
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60504

Sequence Viewer

Length: 564 bp
ATGGCTTCTCTTACTTCAATCAGCCTACACTCATCTTCACTATTGGGATTTGCTTCTAAACATGATCATACTTCTTGCTGGTTTACAGTGAGATCAGTAAGATCCTCAAGGCAAGGATTGTCATCGCAGACCGTCCCACGGGGCCTGAAAATTCGAAGTGCAGCAACAAAACAAGCCAAAACTCCAGCTGAAGAGGATTGGAAGATTAAGAGGGAACTTCTGCTACAGAAGAAGGTAAGAAGTGTGGATGCAAAAGAAGCTCTGCGGCTTCAGAAAGAAAACAACTTCGTGATTCTTGACGTACGGCCTGTAGCAGAGTTTAAAGAGGCTCATCCGCCGAACGCTGTCAATGTGCAAATTTATAGGCTTATAAAGGAGTGGACAGCTTGGGACATTGCTAGGCGAGCTGCATTTGCATTTTTCGGCATTTTTGCAGGCACAGAAGAGAATCCTGAGTTCATTCAAACTGTGGAATCAAAGATAGATAAGAAGGCAAAGATAATAGTGGCTTGTGCATCTGGGGGTACAATGAGACCAACCCAGAATCTACCAGAAGATCACTGA

Protein Analysis

187

Amino Acids

21.0

Weight (kDa)

9.76

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhodanese PF00581 84 - 178 2.8e-09 Rhodanese-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AciI CCGC 2 cut(s) 265, 335
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 150, 357
AcuI CTGAAG 2 cut(s) 210, 254
AfaI GTAC 2 cut(s) 303, 526
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 18, 464
AluBI AGCT 4 cut(s) 188, 260, 386, 407
AluI AGCT 4 cut(s) 188, 260, 386, 407
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 96
AoxI GGCC 2 cut(s) 142, 305
ApeKI GCWGC 2 cut(s) 161, 407
ApoI RAATTY 2 cut(s) 150, 357
AspS9I GGNCC 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 154
BbvI GCAGC 2 cut(s) 173, 394
BceAI ACGGC 1 cut(s) 320
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 2 cut(s) 224, 309
BisI GCNGC 3 cut(s) 162, 266, 408
BlsI GCNGC 3 cut(s) 163, 267, 409
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 143
BmsI GCATC 2 cut(s) 238, 524
BpmI CTGGAG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 253, 331
BseJI GATNNNNATC 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 173, 394
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 144, 307
BsiWI CGTACG 1 cut(s) 301
BslFI GGGAC 2 cut(s) 119, 404
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 2 cut(s) 119, 404
BsnI GGCC 2 cut(s) 144, 307
Bso31I GGTCTC 1 cut(s) 526
Bsp119I TTCGAA 1 cut(s) 154
Bsp143I GATC 4 cut(s) 64, 92, 101, 556
BspACI CCGC 2 cut(s) 265, 335
BspANI GGCC 2 cut(s) 144, 307
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 4 cut(s) 64, 92, 101, 556
Bst4CI ACNGT 3 cut(s) 88, 133, 469
Bst6I CTCTTC 2 cut(s) 186, 438
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 405, 436
BstDEI CTNAG 1 cut(s) 453
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 253, 331
BstKTI GATC 4 cut(s) 67, 95, 104, 559
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 4 cut(s) 64, 92, 101, 556
BstMWI GCNNNNNNNGC 3 cut(s) 257, 404, 413
BstSFI CTRYAG 2 cut(s) 224, 309
BstV1I GCAGC 2 cut(s) 173, 394
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 2 cut(s) 144, 307
BtgI CCRYGG 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 253, 331
BtsIMutI CAGTG 2 cut(s) 93, 559
Cac8I GCNNGC 2 cut(s) 405, 436
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 302, 525
CviAII CATG 1 cut(s) 62
CviQI GTAC 2 cut(s) 302, 525
DdeI CTNAG 1 cut(s) 453
DpnI GATC 4 cut(s) 66, 94, 103, 558
DpnII GATC 4 cut(s) 64, 92, 101, 556
DraI TTTAAA 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 186, 438
EarI CTCTTC 2 cut(s) 186, 438
EciI GGCGGA 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 210, 254
EcoO109I RGGNCCY 1 cut(s) 142
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 63, 69, 363, 371
FaqI GGGAC 2 cut(s) 119, 404
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 162, 266, 408
FokI GGATG 2 cut(s) 260, 318
Fsp4HI GCNGC 3 cut(s) 162, 266, 408
FspBI CTAG 1 cut(s) 399
GluI GCNGC 3 cut(s) 162, 266, 408
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 2 cut(s) 144, 307
Hin1II CATG 1 cut(s) 65
HinfI GANTC 4 cut(s) 292, 448, 473, 544
Hpy166II GTNNAC 2 cut(s) 84, 381
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 3 cut(s) 289, 296, 452
Hpy8I GTNNAC 2 cut(s) 84, 381
HpyAV CCTTC 2 cut(s) 226, 484
HpyCH4III ACNGT 3 cut(s) 88, 133, 469
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 7 cut(s) 161, 251, 355, 410, 416, 434, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 404, 413
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 64, 92, 101, 556
LpnPI CCDG 8 cut(s) 64, 158, 198, 321, 420, 465, 504, 554
Lsp1109I GCAGC 2 cut(s) 173, 394
LweI GCATC 2 cut(s) 238, 524
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 300
MalI GATC 4 cut(s) 66, 94, 103, 558
MboI GATC 4 cut(s) 64, 92, 101, 556
MboII GAAGA 5 cut(s) 27, 203, 214, 241, 455
MflI RGATCY 1 cut(s) 101
MluCI AATT 2 cut(s) 150, 357
MnlI CCTC 4 cut(s) 115, 187, 204, 319
MseI TTAA 2 cut(s) 207, 321
MspA1I CMGCKG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 257, 404, 413
NdeII GATC 4 cut(s) 64, 92, 101, 556
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 143
NspV TTCGAA 1 cut(s) 154
PfeI GAWTC 4 cut(s) 292, 448, 473, 544
Pfl23II CGTACG 1 cut(s) 301
PkrI GCNGC 3 cut(s) 163, 267, 409
PsiI TTATAA 1 cut(s) 371
PspLI CGTACG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 142
PsrI GAACNNNNNNTAC 2 cut(s) 207, 239
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 303, 526
RsaNI GTAC 2 cut(s) 302, 525
SaqAI TTAA 2 cut(s) 207, 321
SatI GCNGC 3 cut(s) 162, 266, 408
Sau3AI GATC 4 cut(s) 64, 92, 101, 556
Sau96I GGNCC 1 cut(s) 142
SetI ASST 6 cut(s) 190, 237, 262, 303, 388, 409
SfaNI GCATC 2 cut(s) 238, 524
SfcI CTRYAG 2 cut(s) 224, 309
SfuI TTCGAA 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 150, 357
SsiI CCGC 2 cut(s) 265, 335
SspMI CTAG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 88, 133, 469
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 154
TasI AATT 2 cut(s) 150, 357
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 4 cut(s) 292, 448, 473, 544
Tru1I TTAA 2 cut(s) 207, 321
Tru9I TTAA 2 cut(s) 207, 321
TscAI CASTG 1 cut(s) 93
TseI GCWGC 2 cut(s) 161, 407
TspDTI ATGAA 1 cut(s) 448
TspRI CASTG 1 cut(s) 93
XapI RAATTY 2 cut(s) 150, 357
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.