Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508943.1

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Reverse (-)

1962 .. 3268

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508943.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggcttctcttacttcaatcagcctacactcatcttcactattgggatttgcttctaaacatgatcatacttcttgctggtttacagtgagatcagtaagatccacaaggcaaggattgtcatcgcagaccgtcccacggggcctgaaaattcgaagtgcagcaacaaaacaagccaaaactccagctgaagaggattggaagattaagagggaacttctgctacagaagaaggtaagaagtgtggatgcaaaagaagctctgcggcttcagaaagaaaacaacttcgtgattcttgacgtacggcctgtagcagagtttaaagaggctcatccgccgaacgctgtcaatgtgcaaatttataggcttataaaggagtggacagcttgggacattgctaggcgagccgcatttgcatttttcggcatttttgcaggcacagaagagaatcctgagttcattcaaactgtggaatcaaagatagataagaaggcaaaaataatagtggcttgtgcatctgggggtacaatgagaccaacccagaatctaccagaaggtcaacaatcaagatcactgatagcggcctacttgcttgtcctcaacggttataccaatgtgttccacttagaaggcggactttactcgtggttcaaagagggactgccggtagaatcagaagaagaagaaaaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

231

Amino Acids

25.98

Weight (kDa)

9.16

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AciI	CCGC	5 cut(s)	265, 335, 408, 581, 633
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	150, 357
AcuI	CTGAAG	2 cut(s)	210, 254
AfaI	GTAC	2 cut(s)	303, 526
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	18, 464, 652
AluBI	AGCT	3 cut(s)	188, 260, 386
AluI	AGCT	3 cut(s)	188, 260, 386
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	3 cut(s)	142, 305, 582
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	150, 357
AspS9I	GGNCC	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	154
BauI	CACGAG	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	224, 309
BisI	GCNGC	4 cut(s)	162, 266, 408, 582
BlsI	GCNGC	4 cut(s)	163, 267, 409, 583
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	2 cut(s)	238, 524
BpmI	CTGGAG	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	253, 331
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	144, 307, 584
BsiSI	CCGG	1 cut(s)	665
BsiWI	CGTACG	1 cut(s)	301
BslFI	GGGAC	3 cut(s)	119, 404, 672
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	526
BsmFI	GGGAC	3 cut(s)	119, 404, 672
BsnI	GGCC	3 cut(s)	144, 307, 584
Bso31I	GGTCTC	1 cut(s)	526
Bsp119I	TTCGAA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	64, 92, 101, 569
BspACI	CCGC	5 cut(s)	265, 335, 408, 581, 633
BspANI	GGCC	3 cut(s)	144, 307, 584
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	4 cut(s)	64, 92, 101, 569
BssSI	CACGAG	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	88, 133, 469, 605
Bst6I	CTCTTC	2 cut(s)	186, 438
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	405, 436
BstDEI	CTNAG	2 cut(s)	453, 625
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	253, 331
BstKTI	GATC	4 cut(s)	67, 95, 104, 572
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	4 cut(s)	64, 92, 101, 569
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 404, 413
BstSFI	CTRYAG	2 cut(s)	224, 309
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	144, 307, 584
BtgI	CCRYGG	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	253, 331
BtsIMutI	CAGTG	2 cut(s)	93, 572
Cac8I	GCNNGC	2 cut(s)	405, 436
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	302, 525
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	2 cut(s)	302, 525
DdeI	CTNAG	2 cut(s)	453, 625
DpnI	GATC	4 cut(s)	66, 94, 103, 571
DpnII	GATC	4 cut(s)	64, 92, 101, 569
DraI	TTTAAA	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	186, 438
EarI	CTCTTC	2 cut(s)	186, 438
EciI	GGCGGA	2 cut(s)	324, 648
Eco31I	GGTCTC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	210, 254
EcoO109I	RGGNCCY	1 cut(s)	142
FaeI	CATG	1 cut(s)	65
FaiI	YATR	5 cut(s)	63, 69, 363, 371, 609
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	3 cut(s)	119, 404, 672
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	162, 266, 408, 582
FokI	GGATG	2 cut(s)	260, 318
Fsp4HI	GCNGC	4 cut(s)	162, 266, 408, 582
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	4 cut(s)	162, 266, 408, 582
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	144, 307, 584
HapII	CCGG	1 cut(s)	665
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	560
HindII	GTYRAC	1 cut(s)	560
HinfI	GANTC	5 cut(s)	292, 448, 473, 544, 671
HpaII	CCGG	1 cut(s)	665
Hpy166II	GTNNAC	3 cut(s)	84, 381, 560
Hpy188I	TCNGA	2 cut(s)	273, 676
Hpy188III	TCNNGA	4 cut(s)	289, 296, 452, 567
Hpy8I	GTNNAC	3 cut(s)	84, 381, 560
HpyAV	CCTTC	4 cut(s)	226, 484, 548, 623
HpyCH4III	ACNGT	4 cut(s)	88, 133, 469, 605
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	161, 251, 355, 416, 434, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 404, 413
HpyF3I	CTNAG	2 cut(s)	453, 625
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	64, 92, 101, 569
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	238, 524
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	300
MalI	GATC	4 cut(s)	66, 94, 103, 571
MboI	GATC	4 cut(s)	64, 92, 101, 569
MboII	GAAGA	8 cut(s)	27, 203, 214, 241, 455, 689, 692, 695
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	2 cut(s)	150, 357
MnlI	CCTC	5 cut(s)	187, 204, 319, 608, 649
MseI	TTAA	2 cut(s)	207, 321
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	3 cut(s)	257, 404, 413
NdeII	GATC	4 cut(s)	64, 92, 101, 569
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	154
PfeI	GAWTC	5 cut(s)	292, 448, 473, 544, 671
Pfl23II	CGTACG	1 cut(s)	301
PkrI	GCNGC	4 cut(s)	163, 267, 409, 583
PsiI	TTATAA	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	142
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PsuI	RGATCY	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	303, 526
RsaNI	GTAC	2 cut(s)	302, 525
SaqAI	TTAA	2 cut(s)	207, 321
SatI	GCNGC	4 cut(s)	162, 266, 408, 582
Sau3AI	GATC	4 cut(s)	64, 92, 101, 569
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	6 cut(s)	190, 237, 262, 303, 388, 559
SfaNI	GCATC	2 cut(s)	238, 524
SfcI	CTRYAG	2 cut(s)	224, 309
SfuI	TTCGAA	1 cut(s)	154
Sse9I	AATT	2 cut(s)	150, 357
SsiI	CCGC	5 cut(s)	265, 335, 408, 581, 633
SspMI	CTAG	1 cut(s)	399
TaaI	ACNGT	4 cut(s)	88, 133, 469, 605
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	154
TasI	AATT	2 cut(s)	150, 357
TauI	GCSGC	3 cut(s)	268, 410, 584
TfiI	GAWTC	5 cut(s)	292, 448, 473, 544, 671
Tru1I	TTAA	2 cut(s)	207, 321
Tru9I	TTAA	2 cut(s)	207, 321
TscAI	CASTG	2 cut(s)	93, 579
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	93, 579
XapI	RAATTY	2 cut(s)	150, 357
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.