Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Forward (+)

35655579 .. 35657214

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1296000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTCTCTGACTTCGATCACACTGCACCAATCTTCTTCTTCCCCATTGGGATCATTGGCTTCAAAGCATTGTCACCATAACCAGAATTCCTGCTGGCATACAGCCGTCGGATCAGTCAGATCATCATCATCAGCATCCACAAGGCAACAGTTTTCATCACAAGGCCTCAGAATCCGCAGTGCAGCGACAAAACAAGCCAAAACGCCAGCTGAAGAGGACTGGAAGACTAAGAGGGAACTTCTCCTACAGAAAAAGGTGAGGAGTGTGGATGTGAAAGAAGCTCTGAGGCTTCAAAAGGAAAACAACTTTGTGATTCTTGACGTGCGGCCTGAAGCGGAATTCAGAGAGGCTCATCCGGCGGGGGCGATCAACGTGCAAATATACAGGCTTATAAAGGAGTGGACAGCATGGGACATTGCCCGCCGTGCTGCTTTTGCATTTTTCGGCATCTTTGCGGGCACAGAAGAGAACCCTGAGTTCATGTCAAGTGTGGAATCGCAGCTAGATAAGAAGGCAAAGATAATAGTGGCTTGCGCCGCCGGAGGTACGATGAAACCGACCCAAAATCTCCCGGAAGGTCAACAGTCAAGATCACTGATAGCAGCCTACTTGCTCGTCCTCAACGGTTACACGAATGTCTTCCACTTAGACGGCGGACTTTACGCGTGGTTTAAGGAGGAGCTGCCATCGGTTGCGGAAGAAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

238

Amino Acids

26.34

Weight (kDa)

8.4

Isoelectric Point (pI)

62.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	92 - 226	3.1e-13	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccII	CGCG	1 cut(s)	668
AciI	CCGC	9 cut(s)	178, 328, 338, 362, 424, 458, 540, 657, 698
AclWI	GGATC	2 cut(s)	61, 121
AcsI	RAATTY	2 cut(s)	88, 341
AcuI	CTGAAG	2 cut(s)	234, 354
AfaI	GTAC	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	66, 296
AjiI	CACGTC	1 cut(s)	325
AluBI	AGCT	4 cut(s)	212, 284, 505, 685
AluI	AGCT	4 cut(s)	212, 284, 505, 685
AlwI	GGATC	2 cut(s)	61, 121
AoxI	GGCC	2 cut(s)	166, 329
ApeKI	GCWGC	5 cut(s)	185, 431, 502, 605, 685
ApoI	RAATTY	2 cut(s)	88, 341
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	539
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	68, 271
BaeGI	GKGCMC	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	233, 634
BbvI	GCAGC	5 cut(s)	197, 418, 514, 617, 672
BccI	CCATC	1 cut(s)	697
BceAI	ACGGC	3 cut(s)	92, 411, 670
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 358, 392
BcnI	CCSGG	1 cut(s)	575
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	7 cut(s)	186, 329, 432, 503, 540, 606, 686
BlsI	GCNGC	7 cut(s)	187, 330, 433, 504, 541, 607, 687
Bme1390I	CCNGG	1 cut(s)	575
BmgBI	CACGTC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	146, 459
BpiI	GAAGAC	2 cut(s)	233, 634
BpuMI	CCSGG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	127
BseGI	GGATG	3 cut(s)	137, 277, 355
BseJI	GATNNNNATC	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	184, 278, 468
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	277, 695
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	5 cut(s)	197, 418, 514, 617, 672
BsgI	GTGCAG	2 cut(s)	11, 204
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	2 cut(s)	168, 331
BsiSI	CCGG	3 cut(s)	359, 543, 575
BslFI	GGGAC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	168, 331
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
BspACI	CCGC	9 cut(s)	178, 328, 338, 362, 424, 458, 540, 657, 698
BspANI	GGCC	2 cut(s)	168, 331
BspCNI	CTCAG	3 cut(s)	183, 279, 469
BspFNI	CGCG	1 cut(s)	668
BspPI	GGATC	2 cut(s)	61, 121
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
Bst4CI	ACNGT	3 cut(s)	153, 588, 629
Bst6I	CTCTTC	3 cut(s)	210, 462, 702
BstC8I	GCNNGC	5 cut(s)	98, 210, 424, 460, 535
BstDEI	CTNAG	5 cut(s)	170, 231, 287, 477, 649
BstF5I	GGATG	3 cut(s)	137, 277, 355
BstFNI	CGCG	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	6 cut(s)	21, 56, 116, 125, 372, 596
BstMBI	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 428, 437, 539
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	5 cut(s)	197, 418, 514, 617, 672
BstV2I	GAAGAC	2 cut(s)	233, 634
BsuRI	GGCC	2 cut(s)	168, 331
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	137, 277, 355
BtsI	GCAGTG	2 cut(s)	23, 187
BtsIMutI	CAGTG	3 cut(s)	23, 187, 596
Cac8I	GCNNGC	5 cut(s)	98, 210, 424, 460, 535
CfoI	GCGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	2 cut(s)	411, 484
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	5 cut(s)	170, 231, 287, 477, 649
DpnI	GATC	6 cut(s)	20, 55, 115, 124, 371, 595
DpnII	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
Eam1104I	CTCTTC	3 cut(s)	210, 462, 702
EarI	CTCTTC	3 cut(s)	210, 462, 702
EciI	GGCGGA	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	234, 354
EcoRI	GAATTC	2 cut(s)	88, 341
FaeI	CATG	2 cut(s)	414, 487
FaiI	YATR	6 cut(s)	81, 102, 385, 395, 412, 485
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	2 cut(s)	410, 483
FauI	CCCGC	3 cut(s)	355, 431, 451
Fnu4HI	GCNGC	7 cut(s)	186, 329, 432, 503, 540, 606, 686
FokI	GGATG	3 cut(s)	124, 284, 342
Fsp4HI	GCNGC	7 cut(s)	186, 329, 432, 503, 540, 606, 686
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	7 cut(s)	186, 329, 432, 503, 540, 606, 686
HaeIII	GGCC	2 cut(s)	168, 331
HapII	CCGG	3 cut(s)	359, 543, 575
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	414, 487
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	174, 316, 497
HpaII	CCGG	3 cut(s)	359, 543, 575
HphI	GGTGA	2 cut(s)	68, 271
Hpy166II	GTNNAC	2 cut(s)	405, 584
Hpy188I	TCNGA	6 cut(s)	12, 113, 122, 173, 288, 347
Hpy188III	TCNNGA	2 cut(s)	320, 591
Hpy8I	GTNNAC	2 cut(s)	405, 584
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	508, 572
HpyCH4III	ACNGT	3 cut(s)	153, 588, 629
HpyCH4IV	ACGT	2 cut(s)	324, 375
HpyCH4V	TGCA	4 cut(s)	28, 185, 379, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 428, 437, 539
HpyF3I	CTNAG	5 cut(s)	170, 231, 287, 477, 649
HpySE526I	ACGT	2 cut(s)	324, 375
Hsp92II	CATG	2 cut(s)	414, 487
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	5 cut(s)	197, 418, 514, 617, 672
LweI	GCATC	2 cut(s)	146, 459
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	324, 375
MaeIII	GTNAC	2 cut(s)	74, 629
MalI	GATC	6 cut(s)	20, 55, 115, 124, 371, 595
MboI	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
MboII	GAAGA	8 cut(s)	27, 30, 33, 227, 238, 479, 634, 713
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	2 cut(s)	88, 341
MluI	ACGCGT	1 cut(s)	666
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	9 cut(s)	179, 211, 228, 255, 282, 343, 539, 632, 673
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	359, 543, 575
MspR9I	CCNGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	4 cut(s)	359, 428, 437, 539
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
NlaIII	CATG	2 cut(s)	414, 487
NmuCI	GTSAC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	174, 316, 497
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	7 cut(s)	187, 330, 433, 504, 541, 607, 687
PsiI	TTATAA	1 cut(s)	395
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	7 cut(s)	186, 329, 432, 503, 540, 606, 686
Sau3AI	GATC	6 cut(s)	18, 53, 113, 122, 369, 593
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	9 cut(s)	214, 261, 286, 327, 378, 507, 550, 583, 687
SfaNI	GCATC	2 cut(s)	146, 459
SfcI	CTRYAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	88, 341
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	9 cut(s)	178, 328, 338, 362, 424, 458, 540, 657, 698
SspMI	CTAG	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	153, 588, 629
TaiI	ACGT	2 cut(s)	327, 378
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	88, 341
TauI	GCSGC	2 cut(s)	331, 542
TfiI	GAWTC	3 cut(s)	174, 316, 497
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	3 cut(s)	30, 187, 603
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	5 cut(s)	185, 431, 502, 605, 685
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	147, 472, 569
TspRI	CASTG	3 cut(s)	30, 187, 603
XapI	RAATTY	2 cut(s)	88, 341
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.