Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009991.1

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1953

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009991.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 608 bp

tgagatcagtaagatccacaaggcaaggattgtcatcgcagaccgtcccacggggcctgaaaattcgaagtgcagcaacaaaacaagccaaaactccagctgaagaggattggaagattaagagggaacttctgctacagaagaaggtaagaagtgtggatgcaaaagaagctctgcggcttcagaaagaaaacaacttcgtgattcttgacgtacggcctgtagcagagtttaaagaggctcatccgccgaacgctgtcaatgtgcaaatttataggcttataaaggagtggacagcttgggacattgctaggcgagccgcatttgcatttttcggcatttttgcaggcacagaagagaatcctgagttcattcaaactgtggaatcaaagatagataagaaggcaaaaataatagtggcttgtgcatctgggggtacaatgagaccaacccagaatctaccagaaggtcaacaatcaagatcactgatagcggcctacttgcttgtcctcaacggttataccaatgtgttccacttagaaggcggactttactcgtggttcaaagagggactgccggtagaatcagaagaagaagaaaaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

201

Amino Acids

22.74

Weight (kDa)

9.28

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	283
AciI	CCGC	5 cut(s)	177, 247, 320, 493, 545
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	62, 269
AcuI	CTGAAG	2 cut(s)	122, 166
AfaI	GTAC	2 cut(s)	215, 438
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	376, 564
AluBI	AGCT	3 cut(s)	100, 172, 298
AluI	AGCT	3 cut(s)	100, 172, 298
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	3 cut(s)	54, 217, 494
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	62, 269
AspS9I	GGNCC	1 cut(s)	54
AsuII	TTCGAA	1 cut(s)	66
BauI	CACGAG	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	2 cut(s)	136, 221
BisI	GCNGC	4 cut(s)	74, 178, 320, 494
BlsI	GCNGC	4 cut(s)	75, 179, 321, 495
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	150, 436
BpmI	CTGGAG	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	165, 243
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	56, 219, 496
BsiSI	CCGG	1 cut(s)	577
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	3 cut(s)	31, 316, 584
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	3 cut(s)	31, 316, 584
BsnI	GGCC	3 cut(s)	56, 219, 496
Bso31I	GGTCTC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	4, 13, 481
BspACI	CCGC	5 cut(s)	177, 247, 320, 493, 545
BspANI	GGCC	3 cut(s)	56, 219, 496
BspCNI	CTCAG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	576
BssAI	RCCGGY	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	4, 13, 481
BssSI	CACGAG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	45, 381, 517
Bst6I	CTCTTC	2 cut(s)	98, 350
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	317, 348
BstDEI	CTNAG	2 cut(s)	365, 537
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	165, 243
BstKTI	GATC	3 cut(s)	7, 16, 484
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	3 cut(s)	4, 13, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 316, 325
BstSFI	CTRYAG	2 cut(s)	136, 221
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	3 cut(s)	56, 219, 496
BtgI	CCRYGG	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	165, 243
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	317, 348
Cfr10I	RCCGGY	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	214, 437
CviQI	GTAC	2 cut(s)	214, 437
DdeI	CTNAG	2 cut(s)	365, 537
DpnI	GATC	3 cut(s)	6, 15, 483
DpnII	GATC	3 cut(s)	4, 13, 481
DraI	TTTAAA	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	98, 350
EarI	CTCTTC	2 cut(s)	98, 350
EciI	GGCGGA	2 cut(s)	236, 560
Eco31I	GGTCTC	1 cut(s)	438
Eco57I	CTGAAG	2 cut(s)	122, 166
EcoO109I	RGGNCCY	1 cut(s)	54
FaiI	YATR	3 cut(s)	275, 283, 521
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	3 cut(s)	31, 316, 584
Fnu4HI	GCNGC	4 cut(s)	74, 178, 320, 494
FokI	GGATG	2 cut(s)	172, 230
Fsp4HI	GCNGC	4 cut(s)	74, 178, 320, 494
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	4 cut(s)	74, 178, 320, 494
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	56, 219, 496
HapII	CCGG	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	5 cut(s)	204, 360, 385, 456, 583
HpaII	CCGG	1 cut(s)	577
Hpy166II	GTNNAC	2 cut(s)	293, 472
Hpy188I	TCNGA	2 cut(s)	185, 588
Hpy188III	TCNNGA	4 cut(s)	201, 208, 364, 479
Hpy8I	GTNNAC	2 cut(s)	293, 472
HpyAV	CCTTC	4 cut(s)	138, 396, 460, 535
HpyCH4III	ACNGT	3 cut(s)	45, 381, 517
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	6 cut(s)	73, 163, 267, 328, 346, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 316, 325
HpyF3I	CTNAG	2 cut(s)	365, 537
HpySE526I	ACGT	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	4, 13, 481
LpnPI	CCDG	9 cut(s)	70, 110, 233, 332, 377, 416, 466, 476, 590
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	150, 436
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	212
MalI	GATC	3 cut(s)	6, 15, 483
MboI	GATC	3 cut(s)	4, 13, 481
MboII	GAAGA	7 cut(s)	115, 126, 153, 367, 601, 604, 607
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	2 cut(s)	62, 269
MnlI	CCTC	5 cut(s)	99, 116, 231, 520, 561
MseI	TTAA	2 cut(s)	119, 233
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	3 cut(s)	169, 316, 325
NdeII	GATC	3 cut(s)	4, 13, 481
NlaIV	GGNNCC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	66
PfeI	GAWTC	5 cut(s)	204, 360, 385, 456, 583
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	75, 179, 321, 495
PsiI	TTATAA	1 cut(s)	283
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	54
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	2 cut(s)	215, 438
RsaNI	GTAC	2 cut(s)	214, 437
SaqAI	TTAA	2 cut(s)	119, 233
SatI	GCNGC	4 cut(s)	74, 178, 320, 494
Sau3AI	GATC	3 cut(s)	4, 13, 481
Sau96I	GGNCC	1 cut(s)	54
SetI	ASST	6 cut(s)	102, 149, 174, 215, 300, 471
SfaNI	GCATC	2 cut(s)	150, 436
SfcI	CTRYAG	2 cut(s)	136, 221
SfuI	TTCGAA	1 cut(s)	66
Sse9I	AATT	2 cut(s)	62, 269
SsiI	CCGC	5 cut(s)	177, 247, 320, 493, 545
SspMI	CTAG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	45, 381, 517
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	62, 269
TauI	GCSGC	3 cut(s)	180, 322, 496
TfiI	GAWTC	5 cut(s)	204, 360, 385, 456, 583
Tru1I	TTAA	2 cut(s)	119, 233
Tru9I	TTAA	2 cut(s)	119, 233
TscAI	CASTG	1 cut(s)	491
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	491
XapI	RAATTY	2 cut(s)	62, 269
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.