Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Forward (+)

20732028 .. 20732768

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTTCTCTGACTTCGATCACGCTGAACCCATCTTATTCTTCCCCGTTGGGATCATTGGCTTCCAAGCATTGCCAGCATAACCAGAATTCCTGCTGGCTTACAGCCGTCGGATCAGTCAGATCATCATCATCCACAAGGCAACGGTTTTCGCCACAGGGCCTCAGAATCCGTAGTGCAGCAACAAAACAAGCTAAAACGCCAGCTGAAGAGGACTGGAAGACTAAGAGGGAACTTCTCCTACAGAAAAAGGTGAGGAGTGTGGATGTGAAAGAAGCTCTGAGGCTCCAAAAAGAAAACAACTTCGTGATTCTTGACGTGCGGCCTGAAGCGGAATTCAAAGAGGTTCGGTTAAGTTTTCTTCGTCGTGATTGCATTTGTCACCCTTACCGGCGTCATGCCAATCTCTGCAGGAAGTTTGAGCTGGCTAACCAAGTACCGGAAAATGAATGTTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

154

Amino Acids

17.57

Weight (kDa)

9.88

Isoelectric Point (pI)

70.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	322, 332, 457
AclWI	GGATC	2 cut(s)	61, 121
AcsI	RAATTY	2 cut(s)	88, 335
AcuI	CTGAAG	2 cut(s)	228, 348
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	319
AluBI	AGCT	4 cut(s)	194, 206, 278, 424
AluI	AGCT	4 cut(s)	194, 206, 278, 424
AlwI	GGATC	2 cut(s)	61, 121
AoxI	GGCC	2 cut(s)	160, 323
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	88, 335
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	265, 374
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	92
BfmI	CTRYAG	2 cut(s)	242, 409
BisI	GCNGC	2 cut(s)	180, 323
BlsI	GCNGC	2 cut(s)	181, 324
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	127
BseGI	GGATG	2 cut(s)	131, 271
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	178, 272
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	162, 325
BsiSI	CCGG	2 cut(s)	391, 440
BslI	CCNNNNNNNGG	1 cut(s)	439
BsnI	GGCC	2 cut(s)	162, 325
Bsp143I	GATC	4 cut(s)	18, 53, 113, 122
BspACI	CCGC	3 cut(s)	322, 332, 457
BspANI	GGCC	2 cut(s)	162, 325
BspCNI	CTCAG	2 cut(s)	177, 273
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	2 cut(s)	61, 121
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	390
BssMI	GATC	4 cut(s)	18, 53, 113, 122
BssNI	GRCGYC	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	394
BstC8I	GCNNGC	4 cut(s)	77, 98, 204, 426
BstDEI	CTNAG	3 cut(s)	164, 225, 281
BstF5I	GGATG	2 cut(s)	131, 271
BstKTI	GATC	4 cut(s)	21, 56, 116, 125
BstMBI	GATC	4 cut(s)	18, 53, 113, 122
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstSFI	CTRYAG	2 cut(s)	242, 409
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	162, 325
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	131, 271
Cac8I	GCNNGC	4 cut(s)	77, 98, 204, 426
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	1 cut(s)	398
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	3 cut(s)	164, 225, 281
DpnI	GATC	4 cut(s)	20, 55, 115, 124
DpnII	GATC	4 cut(s)	18, 53, 113, 122
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	228, 348
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRI	GAATTC	2 cut(s)	88, 335
FaeI	CATG	1 cut(s)	401
FaiI	YATR	2 cut(s)	81, 399
FatI	CATG	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	180, 323
FokI	GGATG	2 cut(s)	118, 278
Fsp4HI	GCNGC	2 cut(s)	180, 323
GluI	GCNGC	2 cut(s)	180, 323
HaeIII	GGCC	2 cut(s)	162, 325
HapII	CCGG	2 cut(s)	391, 440
HgaI	GACGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	401
HinfI	GANTC	2 cut(s)	168, 310
HpaII	CCGG	2 cut(s)	391, 440
HphI	GGTGA	2 cut(s)	265, 374
Hpy188I	TCNGA	5 cut(s)	12, 113, 122, 167, 282
Hpy188III	TCNNGA	3 cut(s)	307, 314, 368
Hpy99I	CGWCG	2 cut(s)	113, 369
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	179, 375, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	164, 225, 281
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	18, 53, 113, 122
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	1 cut(s)	191
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	4 cut(s)	20, 55, 115, 124
MboI	GATC	4 cut(s)	18, 53, 113, 122
MboII	GAAGA	4 cut(s)	33, 221, 232, 353
MluCI	AATT	2 cut(s)	88, 335
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	173, 205, 222, 249, 276, 337
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	391, 440
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	4 cut(s)	18, 53, 113, 122
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	168, 310
PkrI	GCNGC	2 cut(s)	181, 324
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	160
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstI	CTGCAG	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	180, 323
Sau3AI	GATC	4 cut(s)	18, 53, 113, 122
Sau96I	GGNCC	1 cut(s)	160
SetI	ASST	7 cut(s)	196, 208, 255, 280, 321, 348, 426
SfcI	CTRYAG	2 cut(s)	242, 409
Sse9I	AATT	2 cut(s)	88, 335
SsiI	CCGC	3 cut(s)	322, 332, 457
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	88, 335
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	168, 310
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	161
XapI	RAATTY	2 cut(s)	88, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.