Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008416

Physical Location & Seq

Genomic Coordinates Forward (+)

29648427 .. 29654354

Gene Structure 5928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGCTGCTTCTCTTACTTCGATCAGCCTACACTCATCTGCATCTTCAGCATTGGGGTTGGCTTCAAAGCAGTGCCAACATAATAATCACACTTGCTGCTGGCTTACGGAGAGATCAGTAAGATCCTCCTCCACAACCACAAGGCAACGGTTGTCATCAAGGGGCCTCAAAATCCGCAGTGCAGCAACAAAACAAGTCAAATCGCCAGCTGAAGAGGAGTGGAAGACTAAGAGGGAAGTTCTGCTGCAGAACAAGGTAAGGAGTGTGGATGTAAAAGAAGCTCTGCGACTTCAAAAAGAAAACAAATTCGTGATTCTCGATGTCCGGCCTGAAGCAGAATTTAAAGAGGCTCATCCCCCGGGTGCTATTAACGTGCAAATATACAGGCTTATAAAGGAGTGGACAGCATGGGACATTGCCAGGCGTGCTGCATTTGCATTCTTTGGCATCTTTGCTGGCACAGAAGAGAACCCTGAGTTCATACAAAGTGTGGAATCACAACTTGATAAGAAGGCAAAGATCATAGTGGCTTGCGCCGCCGGGGGCACGATGAGACCAACCCAAAATCTCCCAGAAGGTCAACAGTCAAGATCACTGATAGCAGCCTACTTGCTTGTCCTCAACGGTTATACCAATGTGTTCCACTTAGAAGGAGGGCTTTACGCCTGGTTCAAAGAGGGCCTGCCAGCAGTTTCGGAAGAAGAAGAAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

8.63

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27700
fragaria_vesca	FvH4_7g32420 FvH4_7g32420
malus_domestica	MD01G1225500.v1.1 MD07G1296000.v1.1
prunus_persica	Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1 Prupe.2G315600_v2.0.a1
pyrus_communis	pycom01g23390 pycom07g26880
rosa_chinensis	RchiOBHm_Chr1g0381981
rosa_laevigata	RLG00000026196
rosa_multiflora	Rmu_co8508943.1_g000002 Rmu_sc0000110.1_g000001 Rmu_sc0009991.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278290
rosa_rugosa	Rorug01G0432600
rosa_samantha	Rh1AG455900 Rh1BG413000 Rh1CG427900 Rh1DG445300
rosa_wichuraiana	Rw1G041330 Rw1G041520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AciI	CCGC	2 cut(s)	178, 540
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	308, 341
AcuI	CTGAAG	3 cut(s)	33, 234, 354
AgsI	TTSAA	3 cut(s)	69, 296, 676
AjnI	CCWGG	2 cut(s)	422, 668
AluBI	AGCT	2 cut(s)	212, 284
AluI	AGCT	2 cut(s)	212, 284
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	3 cut(s)	166, 329, 682
ApeKI	GCWGC	7 cut(s)	5, 8, 99, 185, 247, 431, 605
ApoI	RAATTY	2 cut(s)	308, 341
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	166, 682
AsuC2I	CCSGG	3 cut(s)	362, 363, 544
AvaI	CYCGRG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	5 cut(s)	86, 197, 234, 418, 617
BciT130I	CCWGG	2 cut(s)	424, 670
BcnI	CCSGG	3 cut(s)	362, 363, 544
BcoDI	GTCTC	1 cut(s)	550
BfmI	CTRYAG	1 cut(s)	248
BisI	GCNGC	8 cut(s)	6, 9, 100, 186, 248, 432, 540, 606
BlsI	GCNGC	8 cut(s)	7, 10, 101, 187, 249, 433, 541, 607
Bme1390I	CCNGG	5 cut(s)	362, 363, 424, 544, 670
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	166, 682
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	5 cut(s)	362, 363, 424, 544, 670
BmsI	GCATC	2 cut(s)	53, 459
BpiI	GAAGAC	1 cut(s)	233
BpuMI	CCSGG	3 cut(s)	362, 363, 544
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	3 cut(s)	360, 361, 543
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	424, 670
BseDI	CCNNGG	3 cut(s)	360, 361, 543
BseGI	GGATG	2 cut(s)	277, 355
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	468
BseRI	GAGGAG	2 cut(s)	121, 233
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	5 cut(s)	86, 197, 234, 418, 617
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	168, 331, 684
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	3 cut(s)	328, 362, 543
BslFI	GGGAC	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	168, 331, 684
Bso31I	GGTCTC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	5 cut(s)	24, 116, 125, 522, 593
BspACI	CCGC	2 cut(s)	178, 540
BspANI	GGCC	3 cut(s)	168, 331, 684
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	167
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	360, 361, 543
BssMI	GATC	5 cut(s)	24, 116, 125, 522, 593
Bst2UI	CCWGG	2 cut(s)	424, 670
Bst4CI	ACNGT	3 cut(s)	153, 588, 629
Bst6I	CTCTTC	3 cut(s)	210, 462, 708
BstC8I	GCNNGC	7 cut(s)	104, 210, 429, 460, 535, 686, 690
BstDEI	CTNAG	3 cut(s)	231, 477, 649
BstF5I	GGATG	2 cut(s)	277, 355
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	5 cut(s)	27, 119, 128, 525, 596
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	5 cut(s)	24, 116, 125, 522, 593
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 428, 437, 539
BstNI	CCWGG	2 cut(s)	424, 670
BstSCI	CCNGG	5 cut(s)	360, 361, 422, 542, 668
BstSFI	CTRYAG	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	551
BstV1I	GCAGC	5 cut(s)	86, 197, 234, 418, 617
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	168, 331, 684
BtsCI	GGATG	2 cut(s)	277, 355
BtsI	GCAGTG	2 cut(s)	80, 187
BtsIMutI	CAGTG	3 cut(s)	80, 187, 596
Cac8I	GCNNGC	7 cut(s)	104, 210, 429, 460, 535, 686, 690
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	166, 682
Cfr9I	CCCGGG	1 cut(s)	361
CviAII	CATG	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	231, 477, 649
DpnI	GATC	5 cut(s)	26, 118, 127, 524, 595
DpnII	GATC	5 cut(s)	24, 116, 125, 522, 593
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	3 cut(s)	210, 462, 708
EarI	CTCTTC	3 cut(s)	210, 462, 708
Eco31I	GGTCTC	1 cut(s)	550
Eco57I	CTGAAG	3 cut(s)	33, 234, 354
Eco88I	CYCGRG	1 cut(s)	361
EcoO109I	RGGNCCY	2 cut(s)	166, 682
EcoRII	CCWGG	2 cut(s)	422, 668
FaeI	CATG	1 cut(s)	414
FaiI	YATR	7 cut(s)	84, 385, 395, 412, 485, 527, 633
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	410
Fnu4HI	GCNGC	8 cut(s)	6, 9, 100, 186, 248, 432, 540, 606
FokI	GGATG	2 cut(s)	284, 342
Fsp4HI	GCNGC	8 cut(s)	6, 9, 100, 186, 248, 432, 540, 606
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	8 cut(s)	6, 9, 100, 186, 248, 432, 540, 606
HaeIII	GGCC	3 cut(s)	168, 331, 684
HapII	CCGG	3 cut(s)	328, 362, 543
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	2 cut(s)	316, 497
HpaII	CCGG	3 cut(s)	328, 362, 543
Hpy166II	GTNNAC	2 cut(s)	405, 584
Hpy188I	TCNGA	1 cut(s)	700
Hpy188III	TCNNGA	3 cut(s)	313, 320, 591
Hpy8I	GTNNAC	2 cut(s)	405, 584
HpyAV	CCTTC	3 cut(s)	508, 572, 647
HpyCH4III	ACNGT	3 cut(s)	153, 588, 629
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	6 cut(s)	44, 185, 250, 379, 434, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 428, 437, 539
HpyF3I	CTNAG	3 cut(s)	231, 477, 649
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	5 cut(s)	24, 116, 125, 522, 593
Lsp1109I	GCAGC	5 cut(s)	86, 197, 234, 418, 617
LweI	GCATC	2 cut(s)	53, 459
MaeII	ACGT	1 cut(s)	375
MalI	GATC	5 cut(s)	26, 118, 127, 524, 595
MboI	GATC	5 cut(s)	24, 116, 125, 522, 593
MboII	GAAGA	7 cut(s)	39, 227, 238, 479, 713, 716, 719
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	2 cut(s)	308, 341
MnlI	CCTC	9 cut(s)	139, 142, 179, 211, 228, 343, 632, 650, 673
MseI	TTAA	2 cut(s)	345, 372
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	328, 362, 543
MspR9I	CCNGG	5 cut(s)	362, 363, 424, 544, 670
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	2 cut(s)	424, 670
MwoI	GCNNNNNNNGC	4 cut(s)	50, 428, 437, 539
NciI	CCSGG	3 cut(s)	362, 363, 544
NdeII	GATC	5 cut(s)	24, 116, 125, 522, 593
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	316, 497
PkrI	GCNGC	8 cut(s)	7, 10, 101, 187, 249, 433, 541, 607
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	422, 668
PspGI	CCWGG	2 cut(s)	422, 668
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	166, 682
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	345, 372
SatI	GCNGC	8 cut(s)	6, 9, 100, 186, 248, 432, 540, 606
Sau3AI	GATC	5 cut(s)	24, 116, 125, 522, 593
Sau96I	GGNCC	2 cut(s)	166, 682
ScrFI	CCNGG	5 cut(s)	362, 363, 424, 544, 670
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	5 cut(s)	214, 261, 286, 378, 583
SfaNI	GCATC	2 cut(s)	53, 459
SfcI	CTRYAG	1 cut(s)	248
SmaI	CCCGGG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	308, 341
SsiI	CCGC	2 cut(s)	178, 540
StyD4I	CCNGG	5 cut(s)	360, 361, 422, 542, 668
TaaI	ACNGT	3 cut(s)	153, 588, 629
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	23, 321
TasI	AATT	2 cut(s)	308, 341
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	316, 497
Tru1I	TTAA	2 cut(s)	345, 372
Tru9I	TTAA	2 cut(s)	345, 372
TscAI	CASTG	3 cut(s)	80, 187, 603
TseI	GCWGC	7 cut(s)	5, 8, 99, 185, 247, 431, 605
TspDTI	ATGAA	1 cut(s)	472
TspGWI	ACGGA	1 cut(s)	125
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	3 cut(s)	80, 187, 603
XapI	RAATTY	2 cut(s)	308, 341
XmaI	CCCGGG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.