AT4G27780

acyl-CoA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13847549 .. 13849934
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27780.2

Sequence Viewer

Length: 1065 bp
ATGGGTGATTGGGCTCAACTTGCTCAGTCTGTGATCCTAGGTTTGATTTTCTCTTACCTTCTCGCTAAGCTGATCTCGATCGTCGTCACGTTTAAAGAAGACAATCTCTCTCTTACTCGTCACCCAGAGGAGTCTCAATTGGAAATTAAACCGGAAGGAGTTGACTCGCGACGTCTCGATTCCTCTTGCGGTGGTTTCGGTGGTGAGGCGGATTCGCTTGTGGCGGAGCAGGGTAGCTCCCGAAGTGATAGCGTTGCCGGTGACGACAGTGAGGAAGATGATGATTGGGAAGGCGTCGAGAGCACGGAACTCGATGAGGCTTTTAGCGCCGCCACTCTTTTTGTGACTACCGCCGCCGCAGATCGGCTTTCGCAGAAGGTACCGAGTGATGTGCAGCAGCAGCTTTACGGATTGTATAAGATTGCTACGGAAGGGCCGTGTACTGCTCCTCAGCCATCAGCTCTCAAAATGACTGCTCGTGCCAAGTGGCAAGCATGGCAGAAACTGGGAGCTATGCCACCTGAAGAGGCGATGGAGAAGTATATTGAGATTGTCACTCAGCTTTACCCAACTTGGTTAGACGGTGGCGTGAAAGCCGGAAGTCGGGGTGGGGATGATGCAGCCTCCAACTCAAGAGGAACCATGGGACCAGTTTTTAGCTCTTTGGTTTATGATGAGGAGTCCGAAAATGAGTTGAAGATTGATGCCATACACGGATTTGCTAGAGAAGGAGAAGTCGAGAATTTACTGAAAAGCATTGAAAGCGGCATTCCTGTAAATGCAAGGGACAGTGAAGGTCGCACACCATTGCACTGGGCTATAGACCGTGGCCACCTCAACATCGCCAAAGTTCTGGTCGATAAGAACGCCGATGTGAATGCTAAGGACAACGAAGGCCAAACCCCTTTGCATTATGCTGTTGTATGCGACAGAGAAGCTATCGCCGAGTTTCTGGTTAAACAGAACGCAAACACAGCCGCTAAAGATGAGGATGGAAACTCTCCCCTTGATCTCTGTGAATCAGACTGGCCCTGGATCCGAGATTCTGCAAAGCAGGCAGACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

354

Amino Acids

38.48

Weight (kDa)

4.43

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 105 - 185 7.6e-26 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 175
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 1 cut(s) 169
AciI CCGC 9 cut(s) 189, 209, 224, 330, 351, 354, 357, 765, 978
AclWI GGATC 3 cut(s) 28, 1030, 1043
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 543
AcyI GRCGYC 2 cut(s) 172, 294
AfaI GTAC 2 cut(s) 381, 442
AfiI CCNNNNNNNGG 2 cut(s) 363, 603
AgsI TTSAA 2 cut(s) 697, 761
AjnI CCWGG 1 cut(s) 1031
AluBI AGCT 8 cut(s) 70, 237, 403, 461, 512, 562, 660, 938
AluI AGCT 8 cut(s) 70, 237, 403, 461, 512, 562, 660, 938
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 138, 179
AlwI GGATC 3 cut(s) 28, 1030, 1043
AlwNI CAGNNNCTG 1 cut(s) 505
AoxI GGCC 4 cut(s) 434, 829, 895, 1028
ApeKI GCWGC 4 cut(s) 394, 397, 400, 620
ApoI RAATTY 1 cut(s) 742
ArsI GACNNNNNNTTYG 2 cut(s) 840, 872
Asp718I GGTACC 1 cut(s) 379
AspA2I CCTAGG 1 cut(s) 37
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 3 cut(s) 434, 647, 1029
AsuHPI GGTGA 4 cut(s) 17, 113, 215, 272
AvaII GGWCC 1 cut(s) 647
AvrII CCTAGG 1 cut(s) 37
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 1 cut(s) 1035
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 16
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 4 cut(s) 406, 409, 412, 632
BccI CCATC 3 cut(s) 463, 526, 986
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 6 cut(s) 292, 326, 373, 407, 860, 894
BciT130I CCWGG 1 cut(s) 1033
BcoDI GTCTC 2 cut(s) 138, 179
BfaI CTAG 2 cut(s) 38, 723
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 330
BisI GCNGC 9 cut(s) 330, 354, 357, 395, 398, 401, 621, 766, 978
BlnI CCTAGG 1 cut(s) 37
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 9 cut(s) 331, 355, 358, 396, 399, 402, 622, 767, 979
Bme1390I CCNGG 1 cut(s) 1033
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 3 cut(s) 434, 647, 1029
BmiI GGNNCC 4 cut(s) 381, 640, 648, 1037
BmrFI CCNGG 1 cut(s) 1033
BmrI ACTGGG 2 cut(s) 515, 823
BmsI GCATC 2 cut(s) 607, 694
BmuI ACTGGG 2 cut(s) 515, 823
BpiI GAAGAC 1 cut(s) 105
Bpu10I CCTNAGC 2 cut(s) 450, 882
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 172, 294
BsaJI CCNNGG 4 cut(s) 37, 642, 826, 1031
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 603
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 4 cut(s) 510, 650, 818, 1031
Bse3DI GCAATG 1 cut(s) 806
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 1033
BseDI CCNNGG 4 cut(s) 37, 642, 826, 1031
BseGI GGATG 2 cut(s) 619, 997
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 363, 603
BseMI GCAATG 1 cut(s) 806
BseMII CTCAG 3 cut(s) 38, 464, 572
BseNI ACTGG 4 cut(s) 510, 650, 818, 1031
BseRI GAGGAG 3 cut(s) 143, 438, 692
BseXI GCAGC 4 cut(s) 406, 409, 412, 632
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 436, 831, 897, 1030
BshNI GGYRCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 3 cut(s) 152, 258, 597
BslFI GGGAC 2 cut(s) 660, 800
BslI CCNNNNNNNGG 2 cut(s) 363, 603
BsmAI GTCTC 2 cut(s) 138, 179
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 660, 800
BsmI GAATGC 2 cut(s) 768, 883
BsnI GGCC 4 cut(s) 436, 831, 897, 1030
Bsp1286I GDGCHC 2 cut(s) 16, 305
Bsp143I GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 642
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 9 cut(s) 189, 209, 224, 330, 351, 354, 357, 765, 978
BspANI GGCC 4 cut(s) 436, 831, 897, 1030
BspCNI CTCAG 3 cut(s) 37, 463, 571
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 4 cut(s) 381, 640, 648, 1037
BspPI GGATC 3 cut(s) 28, 1030, 1043
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 806
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 4 cut(s) 510, 650, 818, 1031
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 4 cut(s) 37, 642, 826, 1031
BssMI GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
BssNI GRCGYC 2 cut(s) 172, 294
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 37, 642
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 1033
Bst4CI ACNGT 4 cut(s) 269, 584, 791, 827
Bst6I CTCTTC 1 cut(s) 519
BstACI GRCGYC 2 cut(s) 172, 294
BstC8I GCNNGC 2 cut(s) 492, 1056
BstDEI CTNAG 5 cut(s) 24, 66, 450, 558, 882
BstDSI CCRYGG 2 cut(s) 642, 826
BstF5I GGATG 2 cut(s) 619, 997
BstFNI CGCG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 6 cut(s) 36, 75, 81, 364, 1012, 1038
BstMAI GTCTC 2 cut(s) 138, 179
BstMBI GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 8 cut(s) 20, 300, 326, 400, 496, 762, 974, 1055
BstNI CCWGG 1 cut(s) 1033
BstSCI CCNGG 1 cut(s) 1031
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 406, 409, 412, 632
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 1035
BstXI CCANNNNNNTGG 2 cut(s) 813, 853
BstYI RGATCY 1 cut(s) 1035
BsuRI GGCC 4 cut(s) 436, 831, 897, 1030
BtgI CCRYGG 2 cut(s) 642, 826
BtgZI GCGATG 2 cut(s) 545, 826
BtsCI GGATG 2 cut(s) 619, 997
BtsIMutI CAGTG 3 cut(s) 274, 796, 811
BtuMI TCGCGA 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 492, 1056
CaiI CAGNNNCTG 1 cut(s) 505
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 3 cut(s) 434, 647, 1029
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 380, 441
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 2 cut(s) 495, 643
CviQI GTAC 2 cut(s) 380, 441
DdeI CTNAG 5 cut(s) 24, 66, 450, 558, 882
DpnI GATC 6 cut(s) 35, 74, 80, 363, 1011, 1037
DpnII GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
DraI TTTAAA 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 829
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 2 cut(s) 224, 239
Eco130I CCWWGG 2 cut(s) 37, 642
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 1031
EcoT14I CCWWGG 2 cut(s) 37, 642
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 37, 642
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 498, 646
FaqI GGGAC 2 cut(s) 660, 800
FatI CATG 2 cut(s) 494, 642
Fnu4HI GCNGC 9 cut(s) 330, 354, 357, 395, 398, 401, 621, 766, 978
FokI GGATG 2 cut(s) 626, 1004
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 9 cut(s) 330, 354, 357, 395, 398, 401, 621, 766, 978
FspBI CTAG 2 cut(s) 38, 723
GlaI GCGC 1 cut(s) 328
GluI GCNGC 9 cut(s) 330, 354, 357, 395, 398, 401, 621, 766, 978
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 4 cut(s) 436, 831, 897, 1030
HapII CCGG 3 cut(s) 152, 258, 597
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 329
Hin1I GRCGYC 2 cut(s) 172, 294
Hin1II CATG 2 cut(s) 498, 646
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 7 cut(s) 131, 164, 179, 212, 680, 1019, 1043
HpaII CCGG 3 cut(s) 152, 258, 597
HphI GGTGA 4 cut(s) 17, 113, 215, 272
Hpy166II GTNNAC 2 cut(s) 163, 441
Hpy188I TCNGA 3 cut(s) 685, 1024, 1040
Hpy188III TCNNGA 7 cut(s) 76, 168, 176, 240, 298, 633, 739
Hpy8I GTNNAC 2 cut(s) 163, 441
Hpy99I CGWCG 3 cut(s) 86, 174, 299
HpyAV CCTTC 8 cut(s) 68, 149, 284, 370, 425, 722, 788, 887
HpyCH4III ACNGT 4 cut(s) 269, 584, 791, 827
HpyCH4IV ACGT 2 cut(s) 89, 172
HpyCH4V TGCA 6 cut(s) 394, 620, 782, 811, 910, 1049
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 300, 326, 400, 496, 762, 974, 1055
HpyF3I CTNAG 5 cut(s) 24, 66, 450, 558, 882
HpySE526I ACGT 2 cut(s) 89, 172
Hsp92I GRCGYC 2 cut(s) 172, 294
Hsp92II CATG 2 cut(s) 498, 646
HspAI GCGC 1 cut(s) 327
KpnI GGTACC 1 cut(s) 383
Kzo9I GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
LmnI GCTCC 4 cut(s) 226, 242, 451, 509
Lsp1109I GCAGC 4 cut(s) 406, 409, 412, 632
LweI GCATC 2 cut(s) 607, 694
MaeI CTAG 2 cut(s) 38, 723
MaeII ACGT 2 cut(s) 89, 172
MaeIII GTNAC 5 cut(s) 85, 119, 260, 343, 553
MalI GATC 6 cut(s) 35, 74, 80, 363, 1011, 1037
MboI GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
MboII GAAGA 4 cut(s) 110, 287, 536, 709
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 2 cut(s) 16, 305
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 3 cut(s) 137, 144, 742
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 3 cut(s) 140, 158, 689
MmeI TCCRAC 1 cut(s) 651
Mox20I TGGCCA 1 cut(s) 831
MscI TGGCCA 1 cut(s) 831
MseI TTAA 3 cut(s) 93, 147, 957
Msp20I TGGCCA 1 cut(s) 831
MspI CCGG 3 cut(s) 152, 258, 597
MspR9I CCNGG 1 cut(s) 1033
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 2 cut(s) 768, 883
MvaI CCWGG 1 cut(s) 1033
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 8 cut(s) 20, 300, 326, 400, 496, 762, 974, 1055
NcoI CCATGG 1 cut(s) 642
NdeII GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
NlaIII CATG 2 cut(s) 498, 646
NlaIV GGNNCC 4 cut(s) 381, 640, 648, 1037
NmeAIII GCCGAG 1 cut(s) 970
NmuCI GTSAC 5 cut(s) 85, 119, 260, 343, 553
NruI TCGCGA 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PctI GAATGC 2 cut(s) 768, 883
PfeI GAWTC 4 cut(s) 179, 212, 1019, 1043
PkrI GCNGC 9 cut(s) 331, 355, 358, 396, 399, 402, 622, 767, 979
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 3 cut(s) 139, 158, 688
PpsI GAGTC 3 cut(s) 139, 158, 688
Psp6I CCWGG 1 cut(s) 1031
PspGI CCWGG 1 cut(s) 1031
PspN4I GGNNCC 4 cut(s) 381, 640, 648, 1037
PspPI GGNCC 3 cut(s) 434, 647, 1029
PstNI CAGNNNCTG 1 cut(s) 505
PsuI RGATCY 1 cut(s) 1035
PvuI CGATCG 1 cut(s) 81
RruI TCGCGA 1 cut(s) 169
RsaI GTAC 2 cut(s) 381, 442
RsaNI GTAC 2 cut(s) 380, 441
SaqAI TTAA 3 cut(s) 93, 147, 957
SatI GCNGC 9 cut(s) 330, 354, 357, 395, 398, 401, 621, 766, 978
Sau3AI GATC 6 cut(s) 33, 72, 78, 361, 1009, 1035
Sau96I GGNCC 3 cut(s) 434, 647, 1029
SchI GAGTC 3 cut(s) 140, 158, 689
ScrFI CCNGG 1 cut(s) 1033
SduI GDGCHC 2 cut(s) 16, 305
SfaNI GCATC 2 cut(s) 607, 694
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 3 cut(s) 137, 144, 742
SsiI CCGC 9 cut(s) 189, 209, 224, 330, 351, 354, 357, 765, 978
SspMI CTAG 2 cut(s) 38, 723
StyD4I CCNGG 1 cut(s) 1031
StyI CCWWGG 2 cut(s) 37, 642
TaaI ACNGT 4 cut(s) 269, 584, 791, 827
TaiI ACGT 2 cut(s) 92, 175
TaqI TCGA 6 cut(s) 77, 177, 297, 312, 738, 858
TasI AATT 3 cut(s) 137, 144, 742
TatI WGTACW 1 cut(s) 440
TauI GCSGC 5 cut(s) 332, 356, 359, 768, 980
TfiI GAWTC 4 cut(s) 179, 212, 1019, 1043
Tru1I TTAA 3 cut(s) 93, 147, 957
Tru9I TTAA 3 cut(s) 93, 147, 957
TscAI CASTG 3 cut(s) 274, 796, 818
TseFI GTSAC 5 cut(s) 85, 119, 260, 343, 553
TseI GCWGC 4 cut(s) 394, 397, 400, 620
Tsp45I GTSAC 5 cut(s) 85, 119, 260, 343, 553
TspGWI ACGGA 4 cut(s) 320, 423, 443, 729
TspRI CASTG 3 cut(s) 274, 796, 818
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 1 cut(s) 742
XmaJI CCTAGG 1 cut(s) 37
XspI CTAG 2 cut(s) 38, 723
ZraI GACGTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.