pycom01g23280

acyl-CoA-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007027
Physical Location & Seq
Reverse (-)
20641437 .. 20643624
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23280.3

Sequence Viewer

Length: 1074 bp
ATGGGCGGAGAGTGGCAGCAGCTCCTCCAATCGATAATCCTCGGCCTCATTTTCTCCTTCCTCCTCGCCAAGCTGATCGCCGTAGTCATCTCCTTCAAGGAAGACAATCTCAGCATCGCTCGCGCTCGCACTGCCGCCCCCGCCGATGCCAATCCGCCGCCGCCAAAAACCGAGCCCTGCGACGACCCGCCTCGCTCCGCCGATTTGAGCTCCGCGGCAATCGAGGCCGAATCGGTCGTCGCCGAGCACGGTAGCGTCAGGAACGAGAGCAGCGAAGGTGGCAGTGATGATGACTGGGAAGGTGTGGAGAGTACGGAATTGGACAAGCTGTTCAGCGCGGCGACGGCGTTTGTTGCGACTGCCGCGGCGGATCGGCAGAAGGTGTCGAGTGATGCGCAGTTGAAGCTTTATGGGCTTTACAAGATTGCTACTGAGGGTCCCTGCAGCGTGCCGCAGCCATTGGCTCTGAAAATGACTGCTCGCGCCAAATGGCAAGCTTGGCAGAAATTGGGTGCTATGCCTCCTGAAGATGCTATGGAGAAGTACATTGATATTGTCACAGAGCTTTATCCTAATTGGGCAGCAGGTTTGACTGTGAAAAGCAGAGGAGGTGGAGATGGTAGTGCACCTGGTAATGATTCTAAAGGACCAATGGGACCGGTTTTCAGCACCTTTGTTTACGAGGAAGAATCTGAACATGATCTAAAGATGGATGCTATTCATGCCTTTGCCAGAGAAGGAGAAGTGGATAATTTGCTTAAATGCATTGAAAGTGGTGTTTCAGTGGATCAGAAAGATAGTGAGGGAAGGACCCCATTGCATTGGGCTGTGGATCGTGGGCACCTGAACATGACAGAGCTTCTTGTTAACAAGAATGCCAATGTCAATGAAAAGGACAATGAGGGCCAAACTGCGTTGCATTACGCTGTTATGTGTGATAGAGAAGGCATTGCTGAATACCTTGTGAAGCAAAATGCCGACATGAGTGCAAAGGACAACGATGGCAACTCTCCATGTGATATCTGTGAGTCAGACTGGCCTTGGTTGCAGGGTGCAAAGGAGAAGAGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000062 GO:0000166 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006810 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009266 GO:0009409 GO:0009505 GO:0009514 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010029 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010162 GO:0010288 GO:0010431 GO:0010876 GO:0012505 GO:0016020 GO:0017076 GO:0021700 GO:0022414 GO:0022611 GO:0030312 GO:0030554 GO:0031090 GO:0031903 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032791 GO:0033036 GO:0033218 GO:0033993 GO:0036094 GO:0036293 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048037 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050662 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0061458 GO:0065007 GO:0070300 GO:0070482 GO:0071695 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:0098827 GO:1900140 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACBP Ank_2 Ank_4 Ank_5

Protein Analysis

358

Amino Acids

38.67

Weight (kDa)

4.61

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 840
AccII CGCG 5 cut(s) 123, 215, 338, 365, 483
AclWI GGATC 3 cut(s) 378, 795, 840
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 313, 545
AgeI ACCGGT 1 cut(s) 658
AgsI TTSAA 3 cut(s) 97, 403, 770
AjnI CCWGG 1 cut(s) 628
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 8 cut(s) 22, 73, 210, 328, 406, 497, 565, 859
AluI AGCT 8 cut(s) 22, 73, 210, 328, 406, 497, 565, 859
Alw21I GWGCWC 3 cut(s) 212, 249, 628
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 3 cut(s) 378, 795, 840
AoxI GGCC 4 cut(s) 43, 225, 904, 1037
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 6 cut(s) 16, 19, 270, 444, 454, 581
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsiGI ACCGGT 1 cut(s) 658
AspLEI GCGC 4 cut(s) 125, 338, 397, 485
AspS9I GGNCC 5 cut(s) 437, 647, 656, 810, 904
AvaII GGWCC 4 cut(s) 437, 647, 656, 810
BaeGI GKGCMC 2 cut(s) 628, 843
BanI GGYRCC 1 cut(s) 840
BanII GRGCYC 2 cut(s) 177, 212
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 3 cut(s) 212, 249, 628
BbvI GCAGC 6 cut(s) 28, 31, 282, 456, 466, 593
BccI CCATC 3 cut(s) 611, 703, 995
BceAI ACGGC 2 cut(s) 65, 360
BcgI CGANNNNNNTGC 2 cut(s) 968, 1002
BciT130I CCWGG 1 cut(s) 630
BfmI CTRYAG 1 cut(s) 442
BfuAI ACCTGC 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 4 cut(s) 437, 647, 656, 810
BmgT120I GGNCC 5 cut(s) 437, 647, 656, 810, 904
BmiI GGNNCC 5 cut(s) 438, 439, 657, 812, 842
BmrFI CCNGG 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 5 cut(s) 123, 136, 382, 520, 703
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 40, 213, 363, 1040
BsaWI WCCGGW 1 cut(s) 658
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 2 cut(s) 299, 1040
Bse3DI GCAATG 2 cut(s) 815, 948
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 40, 213, 363, 1040
BseGI GGATG 1 cut(s) 718
BseJI GATNNNNATC 1 cut(s) 150
BseMI GCAATG 2 cut(s) 815, 948
BseMII CTCAG 2 cut(s) 124, 423
BseNI ACTGG 2 cut(s) 299, 1040
BseRI GAGGAG 3 cut(s) 14, 53, 621
BseSI GKGCMC 2 cut(s) 628, 843
BseXI GCAGC 6 cut(s) 28, 31, 282, 456, 466, 593
Bsh1236I CGCG 5 cut(s) 123, 215, 338, 365, 483
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 4 cut(s) 45, 227, 906, 1039
BshNI GGYRCC 1 cut(s) 840
BshTI ACCGGT 1 cut(s) 658
BshVI ATCGAT 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 3 cut(s) 212, 249, 628
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 2 cut(s) 423, 669
BsmFI GGGAC 2 cut(s) 423, 669
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 4 cut(s) 45, 227, 906, 1039
Bsp1286I GDGCHC 5 cut(s) 177, 212, 249, 628, 843
Bsp143I GATC 5 cut(s) 75, 370, 700, 787, 832
BspANI GGCC 4 cut(s) 45, 227, 906, 1039
BspCNI CTCAG 2 cut(s) 123, 424
BspDI ATCGAT 1 cut(s) 32
BspFNI CGCG 5 cut(s) 123, 215, 338, 365, 483
BspLI GGNNCC 5 cut(s) 438, 439, 657, 812, 842
BspMAI CTGCAG 1 cut(s) 446
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 3 cut(s) 378, 795, 840
BspT107I GGYRCC 1 cut(s) 840
BsrDI GCAATG 2 cut(s) 815, 948
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 2 cut(s) 299, 1040
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 4 cut(s) 40, 213, 363, 1040
BssMI GATC 5 cut(s) 75, 370, 700, 787, 832
BssT1I CCWWGG 1 cut(s) 1040
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 251, 595
Bst6I CTCTTC 1 cut(s) 1058
BstC8I GCNNGC 5 cut(s) 121, 127, 449, 481, 495
BstDEI CTNAG 2 cut(s) 110, 432
BstDSI CCRYGG 2 cut(s) 213, 363
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 5 cut(s) 123, 215, 338, 365, 483
BstHHI GCGC 4 cut(s) 125, 338, 397, 485
BstKTI GATC 5 cut(s) 78, 373, 703, 790, 835
BstMBI GATC 5 cut(s) 75, 370, 700, 787, 832
BstMCI CGRYCG 1 cut(s) 237
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 2 cut(s) 628, 843
BstUI CGCG 5 cut(s) 123, 215, 338, 365, 483
BstV1I GCAGC 6 cut(s) 28, 31, 282, 456, 466, 593
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 822
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 4 cut(s) 45, 227, 906, 1039
BsuTUI ATCGAT 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 213, 363
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 2 cut(s) 129, 289
BtsIMutI CAGTG 4 cut(s) 129, 289, 789, 1069
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 5 cut(s) 121, 127, 449, 481, 495
CfoI GCGC 4 cut(s) 125, 338, 397, 485
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 5 cut(s) 437, 647, 656, 810, 904
Cfr42I CCGCGG 2 cut(s) 216, 366
ClaI ATCGAT 1 cut(s) 32
CseI GACGC 1 cut(s) 244
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 2 cut(s) 312, 544
CspAI ACCGGT 1 cut(s) 658
CviAII CATG 5 cut(s) 698, 722, 850, 982, 1014
CviQI GTAC 2 cut(s) 312, 544
DdeI CTNAG 2 cut(s) 110, 432
DpnI GATC 5 cut(s) 77, 372, 702, 789, 834
DpnII GATC 5 cut(s) 75, 370, 700, 787, 832
Eam1104I CTCTTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 1058
EciI GGCGGA 4 cut(s) 21, 144, 187, 383
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 1040
Eco24I GRGCYC 2 cut(s) 177, 212
Eco32I GATATC 1 cut(s) 1021
Eco47I GGWCC 4 cut(s) 437, 647, 656, 810
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 437, 810
EcoRII CCWGG 1 cut(s) 628
EcoRV GATATC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 1040
EcoT22I ATGCAT 1 cut(s) 767
EcoT38I GRGCYC 2 cut(s) 177, 212
ErhI CCWWGG 1 cut(s) 1040
FaeI CATG 5 cut(s) 701, 725, 853, 985, 1017
FaiI YATR 9 cut(s) 411, 518, 536, 699, 723, 851, 932, 983, 1015
FaqI GGGAC 2 cut(s) 423, 669
FatI CATG 5 cut(s) 697, 721, 849, 981, 1013
FauI CCCGC 2 cut(s) 148, 195
FokI GGATG 1 cut(s) 725
FriOI GRGCYC 2 cut(s) 177, 212
FspI TGCGCA 1 cut(s) 396
GlaI GCGC 4 cut(s) 124, 337, 396, 484
HaeIII GGCC 4 cut(s) 45, 227, 906, 1039
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 244
HhaI GCGC 4 cut(s) 125, 338, 397, 485
Hin1II CATG 5 cut(s) 701, 725, 853, 985, 1017
Hin6I GCGC 4 cut(s) 123, 336, 395, 483
HinP1I GCGC 4 cut(s) 123, 336, 395, 483
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 2 cut(s) 404, 495
HinfI GANTC 5 cut(s) 230, 638, 689, 1028, 1066
HpaI GTTAAC 1 cut(s) 868
HpaII CCGG 1 cut(s) 659
Hpy166II GTNNAC 3 cut(s) 626, 679, 868
Hpy188I TCNGA 4 cut(s) 468, 694, 792, 1033
Hpy188III TCNNGA 2 cut(s) 259, 524
Hpy8I GTNNAC 3 cut(s) 626, 679, 868
Hpy99I CGWCG 3 cut(s) 185, 242, 346
HpyAV CCTTC 8 cut(s) 67, 103, 269, 293, 373, 731, 801, 938
HpyCH4III ACNGT 2 cut(s) 251, 595
HpyCH4V TGCA 8 cut(s) 444, 626, 765, 820, 919, 989, 1048, 1055
HpyF3I CTNAG 2 cut(s) 110, 432
Hsp92II CATG 5 cut(s) 701, 725, 853, 985, 1017
HspAI GCGC 4 cut(s) 123, 336, 395, 483
KflI GGGWCCC 1 cut(s) 437
KspAI GTTAAC 1 cut(s) 868
KspI CCGCGG 2 cut(s) 216, 366
Kzo9I GATC 5 cut(s) 75, 370, 700, 787, 832
LmnI GCTCC 3 cut(s) 27, 200, 215
Lsp1109I GCAGC 6 cut(s) 28, 31, 282, 456, 466, 593
LweI GCATC 5 cut(s) 123, 136, 382, 520, 703
MabI ACCWGGT 1 cut(s) 628
MaeIII GTNAC 2 cut(s) 556, 1067
MalI GATC 5 cut(s) 77, 372, 702, 789, 834
MboI GATC 5 cut(s) 75, 370, 700, 787, 832
MboII GAAGA 3 cut(s) 113, 539, 698
MhlI GDGCHC 5 cut(s) 177, 212, 249, 628, 843
MluCI AATT 4 cut(s) 317, 506, 574, 751
MlyI GAGTC 1 cut(s) 1037
Mph1103I ATGCAT 1 cut(s) 767
MseI TTAA 2 cut(s) 759, 867
MspA1I CMGCKG 2 cut(s) 215, 365
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 5 cut(s) 123, 215, 338, 365, 483
NdeII GATC 5 cut(s) 75, 370, 700, 787, 832
NlaIII CATG 5 cut(s) 701, 725, 853, 985, 1017
NlaIV GGNNCC 5 cut(s) 438, 439, 657, 812, 842
NmeAIII GCCGAG 2 cut(s) 21, 268
NmuCI GTSAC 2 cut(s) 556, 1067
NsbI TGCGCA 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 3 cut(s) 230, 638, 689
PinAI ACCGGT 1 cut(s) 658
PleI GAGTC 1 cut(s) 1036
PpsI GAGTC 1 cut(s) 1036
PpuMI RGGWCCY 2 cut(s) 437, 810
Psp124BI GAGCTC 1 cut(s) 212
Psp5II RGGWCCY 2 cut(s) 437, 810
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 5 cut(s) 438, 439, 657, 812, 842
PspPI GGNCC 5 cut(s) 437, 647, 656, 810, 904
PspPPI RGGWCCY 2 cut(s) 437, 810
PstI CTGCAG 1 cut(s) 446
RsaI GTAC 2 cut(s) 313, 545
RsaNI GTAC 2 cut(s) 312, 544
SacI GAGCTC 1 cut(s) 212
SacII CCGCGG 2 cut(s) 216, 366
SaqAI TTAA 2 cut(s) 759, 867
Sau3AI GATC 5 cut(s) 75, 370, 700, 787, 832
Sau96I GGNCC 5 cut(s) 437, 647, 656, 810, 904
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 5 cut(s) 177, 212, 249, 628, 843
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 5 cut(s) 123, 136, 382, 520, 703
SfcI CTRYAG 1 cut(s) 442
Sfr303I CCGCGG 2 cut(s) 216, 366
SgrBI CCGCGG 2 cut(s) 216, 366
SinI GGWCC 4 cut(s) 437, 647, 656, 810
Sse9I AATT 4 cut(s) 317, 506, 574, 751
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 1040
TaaI ACNGT 2 cut(s) 251, 595
TaqI TCGA 3 cut(s) 32, 222, 386
TaqII GACCGA 1 cut(s) 223
TasI AATT 4 cut(s) 317, 506, 574, 751
TatI WGTACW 1 cut(s) 543
TauI GCSGC 8 cut(s) 137, 160, 163, 218, 341, 365, 368, 454
TfiI GAWTC 3 cut(s) 230, 638, 689
Tru1I TTAA 2 cut(s) 759, 867
Tru9I TTAA 2 cut(s) 759, 867
TscAI CASTG 3 cut(s) 136, 289, 789
TseFI GTSAC 2 cut(s) 556, 1067
TseI GCWGC 6 cut(s) 16, 19, 270, 444, 454, 581
Tsp45I GTSAC 2 cut(s) 556, 1067
TspDTI ATGAA 2 cut(s) 710, 903
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 3 cut(s) 136, 289, 789
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 4 cut(s) 437, 647, 656, 810
Zsp2I ATGCAT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.