MD01G1223600.v1.1

acyl-CoA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
31523375 .. 31526046
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1223600.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGGGAGGAGAGTGGCAGCAGCTCCTCCAATCGATAATCCTCGGCCTCATTTTCTCCTTCCTCCTCGCCAAGCTTATCGCCATAGTCATCTCCTTCAAGGAAGACAATCTCAGCCTCGCTCGCGCTCGCACTGCCGCCCCCGCCGATACCAATCCGCCGCCGCCCAAACCCGAGCCCTGCGACGACCCGCCTCGCTCCGCCGATTTGAGCTCCGCGGCAATCGAGGCCGAATCGGTCGTCGCCGAGCACGGCAGCGTCAGGAACGAGAGCAGCGAAGGTGACAGTGATGATGACTGGGAAGGTGTGGAGAGTACGGAATTGGACAAGCTGTTCAGCGCGGCGTCGGCGTTTGTCGCGGCGGCCGCGACGGATCGGCAGAAGGTGTCGACTGATGCGCAGTTGAAGCTTTATGGGCTTTACAAGATTGCTACTGAGGGTCCCTGCAGCGTGCCGCAGCCATCGGCTCTGAAAATGACTGCTCGCGCCAAATGGCAAGCTTGGCAGAAATTGGGTGCTATGCCTCCTGAAGATGCTATGGAGAAGTACATTGATATTGTCACAGAGCTTTATCCTAACTGGGCAGCAGGTTTGACTGTGAAAAGCAGAGGAGGTGGAGATGGTAGTGCACCTGGTAATGATTCTAAAGGACCAATGGGACCGGTTTTCAGCACCTTTGTTTACGAGGAAGAATCTGAAAAGGATCTAAAGATGGATGCTATTCATGCCTTTGCCAGAGAAGGGGAAGTGGATAATTTGCTTAAATGCATTGAAAGTGGTGTTTCAGTGGATCAGAAAGATGGTGAGGGAAGGACCCCATTGCATTGGGCTGTGGATCGTGGGCACCTGAACACGACAGAGCTGCTTGTTAACAAGAATGCCAACATTAATGAAAAGGACAATGAGGGCCAAACTGCATTGCACTATGCGGTTACGTGCGATAGAGAAGGCATTGCTGAATACCTTGTGAAGCAAAATGCCGACACGAGTGCAAAGGACAACGATGGCAACTCTCCAAGTGATATCTGTGAGTCAAACTGGCCTTGGTTGCAGGTTGCAAAGGAGAAGAGTCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

38.65

Weight (kDa)

4.62

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 109 - 186 2e-26 Acyl CoA binding protein
Ank_4 PF13637 240 - 289 8.2e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 241 - 332 1.4e-18 Ankyrin repeats (3 copies)
Ank_5 PF13857 260 - 309 2.1e-09 Ankyrin repeats (many copies)
Ank PF00023 269 - 300 1.5e-08 Ankyrin repeat
Ank_4 PF13637 273 - 322 6.5e-11 Ankyrin repeats (many copies)
Ank_5 PF13857 287 - 341 4.7e-08 Ankyrin repeats (many copies)
Ank PF00023 302 - 333 6.5e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 396
Acc36I ACCTGC 2 cut(s) 575, 1039
AccB1I GGYRCC 1 cut(s) 840
AccI GTMKAC 1 cut(s) 386
AccII CGCG 6 cut(s) 123, 215, 338, 356, 365, 483
AclWI GGATC 4 cut(s) 378, 708, 795, 840
AcoI YGGCCR 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 2 cut(s) 313, 545
AfiI CCNNNNNNNGG 1 cut(s) 738
AgeI ACCGGT 1 cut(s) 658
AgsI TTSAA 3 cut(s) 97, 403, 770
AjnI CCWGG 1 cut(s) 628
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 8 cut(s) 22, 73, 210, 328, 406, 497, 565, 859
AluI AGCT 8 cut(s) 22, 73, 210, 328, 406, 497, 565, 859
Alw21I GWGCWC 3 cut(s) 212, 249, 628
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 4 cut(s) 378, 708, 795, 840
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 5 cut(s) 43, 225, 360, 904, 1037
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 8 cut(s) 16, 19, 252, 270, 444, 454, 581, 859
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AseI ATTAAT 1 cut(s) 885
AsiGI ACCGGT 1 cut(s) 658
AspLEI GCGC 4 cut(s) 125, 338, 397, 485
AspS9I GGNCC 5 cut(s) 437, 647, 656, 810, 904
AsuHPI GGTGA 2 cut(s) 290, 812
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 4 cut(s) 437, 647, 656, 810
BaeGI GKGCMC 2 cut(s) 628, 843
BanI GGYRCC 1 cut(s) 840
BanII GRGCYC 2 cut(s) 177, 212
BauI CACGAG 1 cut(s) 982
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 3 cut(s) 212, 249, 628
BbvI GCAGC 8 cut(s) 28, 31, 264, 282, 456, 466, 593, 846
BccI CCATC 5 cut(s) 466, 611, 703, 791, 995
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 4 cut(s) 841, 875, 968, 1002
BciT130I CCWGG 1 cut(s) 630
BfmI CTRYAG 1 cut(s) 442
BfuAI ACCTGC 2 cut(s) 575, 1039
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 4 cut(s) 437, 647, 656, 810
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 5 cut(s) 437, 647, 656, 810, 904
BmiI GGNNCC 5 cut(s) 438, 439, 657, 812, 842
BmrFI CCNGG 1 cut(s) 630
BmrI ACTGGG 2 cut(s) 304, 586
BmsI GCATC 3 cut(s) 382, 520, 703
BmuI ACTGGG 2 cut(s) 304, 586
BpiI GAAGAC 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 933
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 40, 213, 1040
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 1 cut(s) 738
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 3 cut(s) 299, 581, 1040
Bse3DI GCAATG 3 cut(s) 815, 914, 948
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 3 cut(s) 40, 213, 1040
BseGI GGATG 1 cut(s) 718
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 738
BseMI GCAATG 3 cut(s) 815, 914, 948
BseMII CTCAG 2 cut(s) 124, 423
BseNI ACTGG 3 cut(s) 299, 581, 1040
BseRI GAGGAG 4 cut(s) 14, 21, 53, 621
BseSI GKGCMC 2 cut(s) 628, 843
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 8 cut(s) 28, 31, 264, 282, 456, 466, 593, 846
Bsh1236I CGCG 6 cut(s) 123, 215, 338, 356, 365, 483
Bsh1285I CGRYCG 2 cut(s) 237, 363
BshFI GGCC 5 cut(s) 45, 227, 362, 906, 1039
BshNI GGYRCC 1 cut(s) 840
BshTI ACCGGT 1 cut(s) 658
BshVI ATCGAT 1 cut(s) 32
BsiEI CGRYCG 2 cut(s) 237, 363
BsiHKAI GWGCWC 3 cut(s) 212, 249, 628
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 2 cut(s) 423, 669
BslI CCNNNNNNNGG 1 cut(s) 738
BsmFI GGGAC 2 cut(s) 423, 669
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 5 cut(s) 45, 227, 362, 906, 1039
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 5 cut(s) 177, 212, 249, 628, 843
Bsp143I GATC 4 cut(s) 370, 700, 787, 832
BspANI GGCC 5 cut(s) 45, 227, 362, 906, 1039
BspCNI CTCAG 2 cut(s) 123, 424
BspDI ATCGAT 1 cut(s) 32
BspFNI CGCG 6 cut(s) 123, 215, 338, 356, 365, 483
BspLI GGNNCC 5 cut(s) 438, 439, 657, 812, 842
BspMAI CTGCAG 1 cut(s) 446
BspMI ACCTGC 2 cut(s) 575, 1039
BspPI GGATC 4 cut(s) 378, 708, 795, 840
BspT107I GGYRCC 1 cut(s) 840
BsrDI GCAATG 3 cut(s) 815, 914, 948
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 3 cut(s) 299, 581, 1040
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 3 cut(s) 40, 213, 1040
BssMI GATC 4 cut(s) 370, 700, 787, 832
BssNI GRCGYC 1 cut(s) 341
BssSI CACGAG 1 cut(s) 982
BssT1I CCWWGG 1 cut(s) 1040
Bst2BI CACGAG 1 cut(s) 982
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 284, 595
Bst6I CTCTTC 1 cut(s) 1058
BstACI GRCGYC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 933
BstC8I GCNNGC 5 cut(s) 121, 127, 449, 481, 495
BstDEI CTNAG 2 cut(s) 110, 432
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 6 cut(s) 123, 215, 338, 356, 365, 483
BstHHI GCGC 4 cut(s) 125, 338, 397, 485
BstKTI GATC 4 cut(s) 373, 703, 790, 835
BstMBI GATC 4 cut(s) 370, 700, 787, 832
BstMCI CGRYCG 2 cut(s) 237, 363
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 2 cut(s) 628, 843
BstUI CGCG 6 cut(s) 123, 215, 338, 356, 365, 483
BstV1I GCAGC 8 cut(s) 28, 31, 264, 282, 456, 466, 593, 846
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 700
BstXI CCANNNNNNTGG 1 cut(s) 822
BstYI RGATCY 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 5 cut(s) 45, 227, 362, 906, 1039
BsuTUI ATCGAT 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 4 cut(s) 129, 289, 789, 1069
BveI ACCTGC 2 cut(s) 575, 1039
Cac8I GCNNGC 5 cut(s) 121, 127, 449, 481, 495
CciNI GCGGCCGC 1 cut(s) 360
CfoI GCGC 4 cut(s) 125, 338, 397, 485
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 5 cut(s) 437, 647, 656, 810, 904
Cfr42I CCGCGG 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 32
CseI GACGC 2 cut(s) 244, 330
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 2 cut(s) 312, 544
CspAI ACCGGT 1 cut(s) 658
CviAII CATG 1 cut(s) 722
CviQI GTAC 2 cut(s) 312, 544
DdeI CTNAG 2 cut(s) 110, 432
DpnI GATC 4 cut(s) 372, 702, 789, 834
DpnII GATC 4 cut(s) 370, 700, 787, 832
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 1058
EciI GGCGGA 2 cut(s) 144, 187
Ecl136II GAGCTC 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 1040
Eco24I GRGCYC 2 cut(s) 177, 212
Eco32I GATATC 1 cut(s) 1021
Eco47I GGWCC 4 cut(s) 437, 647, 656, 810
Eco52I CGGCCG 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 437, 810
EcoRII CCWGG 1 cut(s) 628
EcoRV GATATC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 1040
EcoT22I ATGCAT 1 cut(s) 767
EcoT38I GRGCYC 2 cut(s) 177, 212
ErhI CCWWGG 1 cut(s) 1040
FaeI CATG 1 cut(s) 725
FaiI YATR 6 cut(s) 83, 411, 518, 536, 723, 924
FaqI GGGAC 2 cut(s) 423, 669
FatI CATG 1 cut(s) 721
FauI CCCGC 2 cut(s) 148, 195
FblI GTMKAC 1 cut(s) 386
FokI GGATG 1 cut(s) 725
FriOI GRGCYC 2 cut(s) 177, 212
FspI TGCGCA 1 cut(s) 396
GlaI GCGC 4 cut(s) 124, 337, 396, 484
HaeIII GGCC 5 cut(s) 45, 227, 362, 906, 1039
HapII CCGG 1 cut(s) 659
HgaI GACGC 2 cut(s) 244, 330
HhaI GCGC 4 cut(s) 125, 338, 397, 485
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 1 cut(s) 725
Hin6I GCGC 4 cut(s) 123, 336, 395, 483
HinP1I GCGC 4 cut(s) 123, 336, 395, 483
HincII GTYRAC 2 cut(s) 387, 868
HindII GTYRAC 2 cut(s) 387, 868
HindIII AAGCTT 3 cut(s) 71, 404, 495
HinfI GANTC 5 cut(s) 230, 638, 689, 1028, 1066
HpaI GTTAAC 1 cut(s) 868
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 290, 812
Hpy166II GTNNAC 4 cut(s) 387, 626, 679, 868
Hpy188I TCNGA 3 cut(s) 468, 694, 792
Hpy188III TCNNGA 2 cut(s) 259, 524
Hpy8I GTNNAC 4 cut(s) 387, 626, 679, 868
Hpy99I CGWCG 4 cut(s) 185, 242, 346, 370
HpyAV CCTTC 8 cut(s) 67, 103, 269, 293, 373, 731, 801, 938
HpyCH4III ACNGT 2 cut(s) 284, 595
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 9 cut(s) 444, 626, 765, 820, 914, 919, 989, 1048, 1055
HpyF3I CTNAG 2 cut(s) 110, 432
HpySE526I ACGT 1 cut(s) 932
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 1 cut(s) 725
HspAI GCGC 4 cut(s) 123, 336, 395, 483
KflI GGGWCCC 1 cut(s) 437
KspAI GTTAAC 1 cut(s) 868
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 4 cut(s) 370, 700, 787, 832
LmnI GCTCC 3 cut(s) 27, 200, 215
Lsp1109I GCAGC 8 cut(s) 28, 31, 264, 282, 456, 466, 593, 846
LweI GCATC 3 cut(s) 382, 520, 703
MabI ACCWGGT 1 cut(s) 628
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 4 cut(s) 278, 556, 928, 1067
MalI GATC 4 cut(s) 372, 702, 789, 834
MboI GATC 4 cut(s) 370, 700, 787, 832
MboII GAAGA 3 cut(s) 113, 539, 698
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 5 cut(s) 177, 212, 249, 628, 843
MluCI AATT 3 cut(s) 317, 506, 751
MlyI GAGTC 1 cut(s) 1037
Mph1103I ATGCAT 1 cut(s) 767
MseI TTAA 3 cut(s) 759, 867, 885
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 6 cut(s) 123, 215, 338, 356, 365, 483
NdeII GATC 4 cut(s) 370, 700, 787, 832
NlaIII CATG 1 cut(s) 725
NlaIV GGNNCC 5 cut(s) 438, 439, 657, 812, 842
NmeAIII GCCGAG 2 cut(s) 21, 268
NmuCI GTSAC 3 cut(s) 278, 556, 1067
NotI GCGGCCGC 1 cut(s) 360
NsbI TGCGCA 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 3 cut(s) 230, 638, 689
PinAI ACCGGT 1 cut(s) 658
PleI GAGTC 1 cut(s) 1036
PpsI GAGTC 1 cut(s) 1036
Ppu21I YACGTR 1 cut(s) 933
PpuMI RGGWCCY 2 cut(s) 437, 810
PshBI ATTAAT 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 212
Psp5II RGGWCCY 2 cut(s) 437, 810
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 5 cut(s) 438, 439, 657, 812, 842
PspPI GGNCC 5 cut(s) 437, 647, 656, 810, 904
PspPPI RGGWCCY 2 cut(s) 437, 810
PstI CTGCAG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 2 cut(s) 313, 545
RsaNI GTAC 2 cut(s) 312, 544
SacI GAGCTC 1 cut(s) 212
SacII CCGCGG 1 cut(s) 216
SalI GTCGAC 1 cut(s) 385
SaqAI TTAA 3 cut(s) 759, 867, 885
Sau3AI GATC 4 cut(s) 370, 700, 787, 832
Sau96I GGNCC 5 cut(s) 437, 647, 656, 810, 904
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 5 cut(s) 177, 212, 249, 628, 843
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 3 cut(s) 382, 520, 703
SfcI CTRYAG 1 cut(s) 442
Sfr303I CCGCGG 1 cut(s) 216
SgrBI CCGCGG 1 cut(s) 216
SinI GGWCC 4 cut(s) 437, 647, 656, 810
Sse9I AATT 3 cut(s) 317, 506, 751
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 1040
TaaI ACNGT 2 cut(s) 284, 595
TaiI ACGT 1 cut(s) 935
TaqI TCGA 3 cut(s) 32, 222, 386
TaqII GACCGA 1 cut(s) 223
TasI AATT 3 cut(s) 317, 506, 751
TatI WGTACW 1 cut(s) 543
TauI GCSGC 9 cut(s) 137, 160, 163, 218, 341, 359, 362, 365, 454
TfiI GAWTC 3 cut(s) 230, 638, 689
Tru1I TTAA 3 cut(s) 759, 867, 885
Tru9I TTAA 3 cut(s) 759, 867, 885
TscAI CASTG 3 cut(s) 136, 289, 789
TseFI GTSAC 3 cut(s) 278, 556, 1067
TseI GCWGC 8 cut(s) 16, 19, 252, 270, 444, 454, 581, 859
Tsp45I GTSAC 3 cut(s) 278, 556, 1067
TspDTI ATGAA 2 cut(s) 710, 903
TspGWI ACGGA 2 cut(s) 329, 383
TspRI CASTG 3 cut(s) 136, 289, 789
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 4 cut(s) 437, 647, 656, 810
VspI ATTAAT 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.