FvH4_7g32090

acyl-CoA-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007027
Physical Location & Seq
Reverse (-)
23109248 .. 23112542
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32090.t3

Sequence Viewer

Length: 1032 bp
ATGGGAGGCGACTGGCAGCAGCTGCTCCAATCGGTTGTCCTCGGCCTCATTTTCTCCTACCTACTCGCCAAGCTCATCTCCATAGTCGTCTCCTTCAAGGACGAAAATCTCACCATCACCCGCGCCGGCACCGCTCCGCCCGAGCCCAGTCCCTCCCGCCCCGACACGGCCCGCTCCGCCGACTCCGCCGCGCTGCTCCACGAGGCCGATTCGGTCGTCGCCGAGCACGGGAGCGTCAGGAGCAGCGAGGTTGGGAGCGACGATGACTGGGAAGGCGTGGAGAGTACGGAACTGGACGAGCTGTTCAGCGCCGCTACGGCGTTTGTGGCAGCGGCCGCGGCGGAGAGGACGAAGGTCTCGACGGAGAAACAGCTGCAGCTTTACGGACTTTACAAGATCGCCACCGAGGGACCATGTAGCGTGCCGCAGCCGTCGGCGCTGAAAATGACGGCTCGCGCCAAGTGGCAAGCATGGCAGAAACTAGGTGCTATGCCTCCTGAGGATGCAATGGAGAAGTACCTTGATATTGTTTCTGAGCTATATCCTACTTGGGCTGATGGTTTGATTGTGAGCAAAGGTGGAGATGGTAGCTCGGGTGGTAATGATTCTAAAGGACCAATGGGGCCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGAAATTGATTTCAAAATGGATGCGATTCATGCCTTTGCTAGAGAAGGAGAAGTGGATAACTTGCTTAAATGCATTGACAGTGGTGTTTCAGTAGACACAAAGGATAGTGAGGGAAGGACCCCATTGCATTGGGCTGTTGATCGTGGCCACCTACACATGGCTGAGATGCTTGTTAGCAGGAATGCTGATGTTAATGCAAAGGACAATGAGGGCCAAACTGCATTGCATTATGCTGCTGTGTGCGATAGAGAGGGCATCGCTGAATATCTTGTGAAGAAAAACGCAGACACAAACGTGAAAGACAACGATGGCAACTCTCCATCTGATCTTTGTGAGTCAAAATGGTCGTGGCTGCAGCGTGCAAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000062 GO:0000166 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006810 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009266 GO:0009409 GO:0009505 GO:0009514 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010029 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010162 GO:0010288 GO:0010431 GO:0010876 GO:0012505 GO:0016020 GO:0017076 GO:0021700 GO:0022414 GO:0022611 GO:0030312 GO:0030554 GO:0031090 GO:0031903 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032791 GO:0033036 GO:0033218 GO:0033993 GO:0036094 GO:0036293 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048037 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050662 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0061458 GO:0065007 GO:0070300 GO:0070482 GO:0071695 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:0098827 GO:1900140 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACBP Ank_2 Ank_4 Ank_5

Protein Analysis

344

Amino Acids

37.12

Weight (kDa)

4.66

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 99 - 177 5.4e-26 Acyl CoA binding protein
Ank_2 PF12796 219 - 288 3.1e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 230 - 279 2.1e-09 Ankyrin repeats (many copies)
Ank PF00023 259 - 288 4.7e-09 Ankyrin repeat
Ank_5 PF13857 297 - 341 9e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 299 - 332 3.2e-06 Ankyrin repeats (3 copies)
Ank PF00023 302 - 333 1.1e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 2 cut(s) 134, 174
AccI GTMKAC 1 cut(s) 753
AccII CGCG 4 cut(s) 123, 191, 338, 456
AclWI GGATC 1 cut(s) 664
AcoI YGGCCR 2 cut(s) 333, 805
AfaI GTAC 2 cut(s) 286, 518
AfiI CCNNNNNNNGG 3 cut(s) 166, 228, 817
AgsI TTSAA 2 cut(s) 97, 673
AleI CACNNNNGTG 1 cut(s) 953
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 7 cut(s) 22, 73, 301, 373, 379, 538, 591
AluI AGCT 7 cut(s) 22, 73, 301, 373, 379, 538, 591
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 94, 361
AlwI GGATC 1 cut(s) 664
AlwNI CAGNNNCTG 1 cut(s) 22
Ama87I CYCGRG 2 cut(s) 140, 592
AoxI GGCC 7 cut(s) 43, 168, 204, 333, 623, 805, 871
AspLEI GCGC 5 cut(s) 125, 193, 311, 439, 458
AspS9I GGNCC 6 cut(s) 169, 410, 614, 623, 777, 871
AsuHPI GGTGA 2 cut(s) 103, 109
AvaI CYCGRG 2 cut(s) 140, 592
AvaII GGWCC 3 cut(s) 410, 614, 777
AxyI CCTNAGG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 807
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 5 cut(s) 122, 551, 578, 962, 988
BceAI ACGGC 4 cut(s) 183, 333, 415, 465
BcoDI GTCTC 2 cut(s) 94, 361
BfaI CTAG 2 cut(s) 482, 699
BfmI CTRYAG 2 cut(s) 374, 1013
BfoI RGCGCY 2 cut(s) 312, 440
BglI GCCNNNNNGGC 1 cut(s) 317
Bme18I GGWCC 3 cut(s) 410, 614, 777
BmeT110I CYCGRG 2 cut(s) 140, 592
BmgT120I GGNCC 6 cut(s) 169, 410, 614, 623, 777, 871
BmiI GGNNCC 4 cut(s) 130, 411, 624, 779
BmrI ACTGGG 2 cut(s) 141, 277
BmsI GCATC 4 cut(s) 493, 670, 816, 924
BmuI ACTGGG 2 cut(s) 141, 277
BoxI GACNNNNGTC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 40, 336, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 228, 817
Bse118I RCCGGY 2 cut(s) 125, 625
Bse1I ACTGG 4 cut(s) 17, 147, 272, 297
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 3 cut(s) 513, 782, 881
BseDI CCNNGG 3 cut(s) 40, 336, 405
BseGI GGATG 2 cut(s) 508, 685
BseLI CCNNNNNNNGG 3 cut(s) 166, 228, 817
BseMI GCAATG 3 cut(s) 513, 782, 881
BseMII CTCAG 3 cut(s) 489, 525, 813
BseNI ACTGG 4 cut(s) 17, 147, 272, 297
BseRI GAGGAG 1 cut(s) 665
BseX3I CGGCCG 1 cut(s) 333
Bsh1236I CGCG 4 cut(s) 123, 191, 338, 456
Bsh1285I CGRYCG 2 cut(s) 216, 336
BshFI GGCC 7 cut(s) 45, 170, 206, 335, 625, 807, 873
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 2 cut(s) 216, 336
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 140, 592
BsiSI CCGG 2 cut(s) 126, 626
BslFI GGGAC 2 cut(s) 135, 423
BslI CCNNNNNNNGG 3 cut(s) 166, 228, 817
BsmAI GTCTC 2 cut(s) 94, 361
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 135, 423
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 7 cut(s) 45, 170, 206, 335, 625, 807, 873
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 2 cut(s) 140, 592
Bsp1286I GDGCHC 2 cut(s) 147, 228
Bsp143I GATC 4 cut(s) 396, 656, 799, 985
BspANI GGCC 7 cut(s) 45, 170, 206, 335, 625, 807, 873
BspCNI CTCAG 3 cut(s) 490, 526, 814
BspFNI CGCG 4 cut(s) 123, 191, 338, 456
BspLI GGNNCC 4 cut(s) 130, 411, 624, 779
BspMAI CTGCAG 2 cut(s) 378, 1017
BspPI GGATC 1 cut(s) 664
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 361
BsrBI CCGCTC 2 cut(s) 134, 174
BsrDI GCAATG 3 cut(s) 513, 782, 881
BsrFI RCCGGY 2 cut(s) 125, 625
BsrI ACTGG 4 cut(s) 17, 147, 272, 297
BssAI RCCGGY 2 cut(s) 125, 625
BssECI CCNNGG 3 cut(s) 40, 336, 405
BssMI GATC 4 cut(s) 396, 656, 799, 985
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 6 cut(s) 127, 172, 422, 454, 468, 1020
BstDEI CTNAG 3 cut(s) 498, 534, 822
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 508, 685
BstFNI CGCG 4 cut(s) 123, 191, 338, 456
BstH2I RGCGCY 2 cut(s) 312, 440
BstHHI GCGC 5 cut(s) 125, 193, 311, 439, 458
BstKTI GATC 4 cut(s) 399, 659, 802, 988
BstMAI GTCTC 2 cut(s) 94, 361
BstMBI GATC 4 cut(s) 396, 656, 799, 985
BstMCI CGRYCG 2 cut(s) 216, 336
BstPAI GACNNNNGTC 1 cut(s) 353
BstSFI CTRYAG 2 cut(s) 374, 1013
BstUI CGCG 4 cut(s) 123, 191, 338, 456
BstX2I RGATCY 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 789
BstYI RGATCY 1 cut(s) 656
BstZI CGGCCG 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 7 cut(s) 45, 170, 206, 335, 625, 807, 873
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 901
BtsCI GGATG 2 cut(s) 508, 685
BtsIMutI CAGTG 1 cut(s) 745
Cac8I GCNNGC 6 cut(s) 127, 172, 422, 454, 468, 1020
CaiI CAGNNNCTG 1 cut(s) 22
CciNI GCGGCCGC 1 cut(s) 333
CfoI GCGC 5 cut(s) 125, 193, 311, 439, 458
Cfr10I RCCGGY 2 cut(s) 125, 625
Cfr13I GGNCC 6 cut(s) 169, 410, 614, 623, 777, 871
Cfr42I CCGCGG 1 cut(s) 339
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 285, 517
CviAII CATG 4 cut(s) 414, 471, 689, 817
CviQI GTAC 2 cut(s) 285, 517
DdeI CTNAG 3 cut(s) 498, 534, 822
DpnI GATC 4 cut(s) 398, 658, 801, 987
DpnII GATC 4 cut(s) 396, 656, 799, 985
EaeI YGGCCR 2 cut(s) 333, 805
EagI CGGCCG 1 cut(s) 333
EciI GGCGGA 4 cut(s) 126, 166, 175, 356
EclXI CGGCCG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 410, 614, 777
Eco52I CGGCCG 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 2 cut(s) 140, 592
EcoO109I RGGNCCY 1 cut(s) 777
EcoT22I ATGCAT 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 4 cut(s) 417, 474, 692, 820
FaiI YATR 9 cut(s) 83, 415, 472, 491, 541, 648, 690, 818, 891
FaqI GGGAC 2 cut(s) 135, 423
FatI CATG 4 cut(s) 413, 470, 688, 816
FauI CCCGC 3 cut(s) 128, 164, 179
FblI GTMKAC 1 cut(s) 753
FokI GGATG 2 cut(s) 515, 692
FriOI GRGCYC 1 cut(s) 147
FspBI CTAG 2 cut(s) 482, 699
GlaI GCGC 5 cut(s) 124, 192, 310, 438, 457
HaeII RGCGCY 2 cut(s) 312, 440
HaeIII GGCC 7 cut(s) 45, 170, 206, 335, 625, 807, 873
HapII CCGG 2 cut(s) 126, 626
HgaI GACGC 1 cut(s) 223
HhaI GCGC 5 cut(s) 125, 193, 311, 439, 458
Hin1II CATG 4 cut(s) 417, 474, 692, 820
Hin6I GCGC 5 cut(s) 123, 191, 309, 437, 456
HinP1I GCGC 5 cut(s) 123, 191, 309, 437, 456
HinfI GANTC 5 cut(s) 182, 209, 605, 685, 995
HpaII CCGG 2 cut(s) 126, 626
HphI GGTGA 2 cut(s) 103, 109
Hpy166II GTNNAC 1 cut(s) 754
Hpy188I TCNGA 3 cut(s) 535, 661, 985
Hpy188III TCNNGA 3 cut(s) 238, 358, 497
Hpy8I GTNNAC 1 cut(s) 754
Hpy99I CGWCG 4 cut(s) 221, 263, 364, 436
HpyAV CCTTC 5 cut(s) 103, 266, 346, 698, 768
HpyCH4III ACNGT 1 cut(s) 740
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 9 cut(s) 376, 506, 732, 787, 857, 881, 886, 1015, 1022
HpyF3I CTNAG 3 cut(s) 498, 534, 822
HpySE526I ACGT 1 cut(s) 954
Hsp92II CATG 4 cut(s) 417, 474, 692, 820
HspAI GCGC 5 cut(s) 123, 191, 309, 437, 456
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
KspI CCGCGG 1 cut(s) 339
Kzo9I GATC 4 cut(s) 396, 656, 799, 985
LmnI GCTCC 7 cut(s) 30, 139, 179, 201, 231, 240, 255
LpnPI CCDG 8 cut(s) 139, 160, 223, 253, 278, 510, 639, 823
LweI GCATC 4 cut(s) 493, 670, 816, 924
MaeI CTAG 2 cut(s) 482, 699
MaeII ACGT 1 cut(s) 954
MalI GATC 4 cut(s) 398, 658, 801, 987
MbiI CCGCTC 2 cut(s) 134, 174
MboI GATC 4 cut(s) 396, 656, 799, 985
MboII GAAGA 1 cut(s) 946
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 2 cut(s) 147, 228
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 1 cut(s) 663
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 2 cut(s) 176, 1004
Mox20I TGGCCA 1 cut(s) 807
Mph1103I ATGCAT 1 cut(s) 734
MroNI GCCGGC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 807
MseI TTAA 2 cut(s) 726, 852
MslI CAYNNNNRTG 1 cut(s) 953
Msp20I TGGCCA 1 cut(s) 807
MspA1I CMGCKG 4 cut(s) 22, 332, 338, 373
MspI CCGG 2 cut(s) 126, 626
Mva1269I GAATGC 1 cut(s) 847
MvnI CGCG 4 cut(s) 123, 191, 338, 456
NaeI GCCGGC 1 cut(s) 127
NdeII GATC 4 cut(s) 396, 656, 799, 985
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 4 cut(s) 417, 474, 692, 820
NlaIV GGNNCC 4 cut(s) 130, 411, 624, 779
NmeAIII GCCGAG 2 cut(s) 21, 247
NotI GCGGCCGC 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 953
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PctI GAATGC 1 cut(s) 847
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 209, 605, 685
PleI GAGTC 2 cut(s) 176, 1003
PpsI GAGTC 2 cut(s) 176, 1003
PpuMI RGGWCCY 1 cut(s) 777
PshAI GACNNNNGTC 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 777
PspN4I GGNNCC 4 cut(s) 130, 411, 624, 779
PspPI GGNCC 6 cut(s) 169, 410, 614, 623, 777, 871
PspPPI RGGWCCY 1 cut(s) 777
PstI CTGCAG 2 cut(s) 378, 1017
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 656
PvuII CAGCTG 2 cut(s) 22, 373
RsaI GTAC 2 cut(s) 286, 518
RsaNI GTAC 2 cut(s) 285, 517
RseI CAYNNNNRTG 1 cut(s) 953
SacII CCGCGG 1 cut(s) 339
SaqAI TTAA 2 cut(s) 726, 852
Sau3AI GATC 4 cut(s) 396, 656, 799, 985
Sau96I GGNCC 6 cut(s) 169, 410, 614, 623, 777, 871
SchI GAGTC 2 cut(s) 176, 1004
SduI GDGCHC 2 cut(s) 147, 228
SfaNI GCATC 4 cut(s) 493, 670, 816, 924
SfcI CTRYAG 2 cut(s) 374, 1013
Sfr303I CCGCGG 1 cut(s) 339
SgrBI CCGCGG 1 cut(s) 339
SinI GGWCC 3 cut(s) 410, 614, 777
SmiMI CAYNNNNRTG 1 cut(s) 953
Sse9I AATT 1 cut(s) 663
SspMI CTAG 2 cut(s) 482, 699
TaaI ACNGT 1 cut(s) 740
TaiI ACGT 1 cut(s) 957
TaqI TCGA 1 cut(s) 359
TaqII GACCGA 1 cut(s) 202
TasI AATT 1 cut(s) 663
TauI GCSGC 6 cut(s) 191, 314, 335, 338, 341, 427
TfiI GAWTC 3 cut(s) 209, 605, 685
Tru1I TTAA 2 cut(s) 726, 852
Tru9I TTAA 2 cut(s) 726, 852
TscAI CASTG 1 cut(s) 745
TspDTI ATGAA 1 cut(s) 677
TspGWI ACGGA 3 cut(s) 302, 377, 399
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 3 cut(s) 410, 614, 777
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 2 cut(s) 482, 699
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.