Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000316.1

Orthogroup ID

OG0007027

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1148

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000316.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 686 bp

atggggggcgactggcagcagctgctccaatcggtcgtcctcggcctcattttctcctacctactcgccaagctcatctccatagtcgtctccttcaaggacgacaacctcatcatcacacgcgccagcaccgccgccgccccgggcgagcccaaacccgacgacccggcccgctccgccgaatcgggcgccttggtccacgaggccgattcggtggtggcggagcacgggagtgtcaggaacgacagcgccggcagcgaggccgggagcgacgatgactgggaaggcgtggagagtacggaactggacgagattttcagcgccgctacggcgtttgtggcggcggccgcggcggaccggacgaaggtgtcgacggaggcgcagttgcagctctatgggctctacaagatcgccactgagggcccctgtagcgtgccccagccttccgcgctgaaaatgacggctcgcgccaagtggcaagcatggcagaaattgggtgcaatgcctcctgaggatgcgatggagaagtacattgatattgttagtgagctatatcctacttggactgatggtttgattgtgaagagcaaaggtggagatggtagctcagttggtaatgattcgaaaggaccaatgggaccggttttcagcacttttgtttatgaggagggatctggaaatgattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000062 GO:0000166 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006810 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009266 GO:0009409 GO:0009505 GO:0009514 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010029 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010162 GO:0010288 GO:0010431 GO:0010876 GO:0012505 GO:0016020 GO:0017076 GO:0021700 GO:0022414 GO:0022611 GO:0030312 GO:0030554 GO:0031090 GO:0031903 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032791 GO:0033036 GO:0033218 GO:0033993 GO:0036094 GO:0036293 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048037 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050662 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0061458 GO:0065007 GO:0070300 GO:0070482 GO:0071695 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:0098827 GO:1900140 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACBP Ank_2 Ank_4 Ank_5

Protein Analysis

228

Amino Acids

24.08

Weight (kDa)

4.38

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27780 AT4G27780 AT5G53470
fragaria_vesca	FvH4_7g32090 FvH4_7g32090 FvH4_7g32090
malus_domestica	MD01G1223600.v1.1 MD02G1171000.v1.1 MD07G1294300.v1.1
prunus_persica	Prupe.2G314100_v2.0.a1 Prupe.2G314100_v2.0.a1
pyrus_communis	pycom01g23280 pycom07g26710
rosa_chinensis	RchiOBHm_Chr1g0381681
rosa_laevigata	RLG00000026215
rosa_multiflora	Rmu_sc0004579.1_g000004 Rmu_ssc0000316.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278520
rosa_rugosa	Rorug01G0430400 Rorug01G0430400
rosa_samantha	Rh1AG453700 Rh1BG410900 Rh1CG425300 Rh1DG442600
rosa_wichuraiana	Rw1G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	4 cut(s)	123, 350, 449, 468
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	298, 530
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	5 cut(s)	22, 73, 391, 550, 606
AluI	AGCT	5 cut(s)	22, 73, 391, 550, 606
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	679
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	6 cut(s)	43, 168, 204, 261, 345, 421
ApaI	GGGCCC	1 cut(s)	425
ApeKI	GCWGC	5 cut(s)	16, 19, 22, 255, 388
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
AsiGI	ACCGGT	1 cut(s)	640
AspLEI	GCGC	7 cut(s)	125, 191, 251, 323, 382, 451, 470
AspS9I	GGNCC	7 cut(s)	169, 196, 355, 421, 422, 629, 638
AsuC2I	CCSGG	4 cut(s)	143, 144, 167, 265
AsuII	TTCGAA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	4 cut(s)	196, 355, 629, 638
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	425, 438
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	3 cut(s)	153, 402, 425
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	5 cut(s)	9, 28, 31, 267, 400
BccI	CCATC	3 cut(s)	514, 563, 593
BceAI	ACGGC	2 cut(s)	345, 477
BcnI	CCSGG	4 cut(s)	143, 144, 167, 265
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	3 cut(s)	192, 252, 324
BglI	GCCNNNNNGGC	1 cut(s)	329
Bme1390I	CCNGG	4 cut(s)	143, 144, 167, 265
Bme18I	GGWCC	4 cut(s)	196, 355, 629, 638
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	7 cut(s)	169, 196, 355, 421, 422, 629, 638
BmiI	GGNNCC	4 cut(s)	190, 423, 424, 639
BmrFI	CCNGG	4 cut(s)	143, 144, 167, 265
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	623
BpuMI	CCSGG	4 cut(s)	143, 144, 167, 265
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	40, 141, 142, 192, 348
BsaWI	WCCGGW	2 cut(s)	357, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	2 cut(s)	251, 640
Bse1I	ACTGG	3 cut(s)	17, 284, 309
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	40, 141, 142, 192, 348
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	408, 501, 621
BseNI	ACTGG	3 cut(s)	17, 284, 309
BseRI	GAGGAG	1 cut(s)	680
BseSI	GKGCMC	2 cut(s)	425, 438
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	5 cut(s)	9, 28, 31, 267, 400
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	4 cut(s)	123, 350, 449, 468
Bsh1285I	CGRYCG	2 cut(s)	36, 348
BshFI	GGCC	6 cut(s)	45, 170, 206, 263, 347, 423
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	640
BsiEI	CGRYCG	2 cut(s)	36, 348
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	6 cut(s)	143, 167, 252, 264, 358, 641
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	6 cut(s)	45, 170, 206, 263, 347, 423
BsoBI	CYCGRG	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	623
Bsp120I	GGGCCC	1 cut(s)	421
Bsp1286I	GDGCHC	5 cut(s)	153, 228, 402, 425, 438
Bsp143I	GATC	2 cut(s)	408, 671
BspANI	GGCC	6 cut(s)	45, 170, 206, 263, 347, 423
BspCNI	CTCAG	3 cut(s)	409, 502, 620
BspFNI	CGCG	4 cut(s)	123, 350, 449, 468
BspLI	GGNNCC	4 cut(s)	190, 423, 424, 639
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	578
BspT104I	TTCGAA	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	2 cut(s)	251, 640
BsrI	ACTGG	3 cut(s)	17, 284, 309
BssAI	RCCGGY	2 cut(s)	251, 640
BssECI	CCNNGG	5 cut(s)	40, 141, 142, 192, 348
BssMI	GATC	2 cut(s)	408, 671
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	578
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	7 cut(s)	127, 149, 172, 253, 434, 466, 480
BstDEI	CTNAG	3 cut(s)	417, 510, 607
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	4 cut(s)	123, 350, 449, 468
BstH2I	RGCGCY	3 cut(s)	192, 252, 324
BstHHI	GCGC	7 cut(s)	125, 191, 251, 323, 382, 451, 470
BstKTI	GATC	2 cut(s)	411, 674
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	408, 671
BstMCI	CGRYCG	2 cut(s)	36, 348
BstSCI	CCNGG	4 cut(s)	141, 142, 165, 263
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	2 cut(s)	425, 438
BstUI	CGCG	4 cut(s)	123, 350, 449, 468
BstV1I	GCAGC	5 cut(s)	9, 28, 31, 267, 400
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BstZI	CGGCCG	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	6 cut(s)	45, 170, 206, 263, 347, 423
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	7 cut(s)	127, 149, 172, 253, 434, 466, 480
CaiI	CAGNNNCTG	1 cut(s)	22
CciNI	GCGGCCGC	1 cut(s)	345
CfoI	GCGC	7 cut(s)	125, 191, 251, 323, 382, 451, 470
Cfr10I	RCCGGY	2 cut(s)	251, 640
Cfr13I	GGNCC	7 cut(s)	169, 196, 355, 421, 422, 629, 638
Cfr42I	CCGCGG	1 cut(s)	351
Cfr9I	CCCGGG	1 cut(s)	142
CpoI	CGGWCCG	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	297, 529
CspAI	ACCGGT	1 cut(s)	640
CspI	CGGWCCG	1 cut(s)	355
CviAII	CATG	1 cut(s)	483
CviQI	GTAC	2 cut(s)	297, 529
DdeI	CTNAG	3 cut(s)	417, 510, 607
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	2 cut(s)	410, 673
DpnII	GATC	2 cut(s)	408, 671
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
EciI	GGCGGA	3 cut(s)	166, 236, 368
EclXI	CGGCCG	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	3 cut(s)	153, 402, 425
Eco47I	GGWCC	4 cut(s)	196, 355, 629, 638
Eco52I	CGGCCG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	142
EcoO109I	RGGNCCY	2 cut(s)	421, 422
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	3 cut(s)	153, 402, 425
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	486
FaiI	YATR	5 cut(s)	83, 396, 484, 553, 663
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	1 cut(s)	482
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	371
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	3 cut(s)	153, 402, 425
GlaI	GCGC	7 cut(s)	124, 190, 250, 322, 381, 450, 469
GsaI	CCCAGC	1 cut(s)	442
HaeII	RGCGCY	3 cut(s)	192, 252, 324
HaeIII	GGCC	6 cut(s)	45, 170, 206, 263, 347, 423
HapII	CCGG	6 cut(s)	143, 167, 252, 264, 358, 641
HhaI	GCGC	7 cut(s)	125, 191, 251, 323, 382, 451, 470
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	486
Hin6I	GCGC	7 cut(s)	123, 189, 249, 321, 380, 449, 468
HinP1I	GCGC	7 cut(s)	123, 189, 249, 321, 380, 449, 468
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	182, 209, 620
HpaII	CCGG	6 cut(s)	143, 167, 252, 264, 358, 641
Hpy166II	GTNNAC	2 cut(s)	199, 372
Hpy188III	TCNNGA	3 cut(s)	238, 509, 675
Hpy8I	GTNNAC	2 cut(s)	199, 372
Hpy99I	CGWCG	3 cut(s)	164, 275, 376
HpyAV	CCTTC	4 cut(s)	103, 278, 358, 453
HpyCH4V	TGCA	2 cut(s)	388, 500
HpyF3I	CTNAG	3 cut(s)	417, 510, 607
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	486
HspAI	GCGC	7 cut(s)	123, 189, 249, 321, 380, 449, 468
KasI	GGCGCC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	408, 671
LguI	GCTCTTC	1 cut(s)	578
LmnI	GCTCC	4 cut(s)	30, 179, 223, 267
Lsp1109I	GCAGC	5 cut(s)	9, 28, 31, 267, 400
LweI	GCATC	1 cut(s)	505
MalI	GATC	2 cut(s)	410, 673
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	408, 671
MboII	GAAGA	1 cut(s)	595
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	5 cut(s)	153, 228, 402, 425, 438
MluCI	AATT	1 cut(s)	491
Mly113I	GGCGCC	1 cut(s)	189
MroNI	GCCGGC	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	22, 350
MspI	CCGG	6 cut(s)	143, 167, 252, 264, 358, 641
MspR9I	CCNGG	4 cut(s)	143, 144, 167, 265
MvnI	CGCG	4 cut(s)	123, 350, 449, 468
NaeI	GCCGGC	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	189
NciI	CCSGG	4 cut(s)	143, 144, 167, 265
NdeII	GATC	2 cut(s)	408, 671
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	486
NlaIV	GGNNCC	4 cut(s)	190, 423, 424, 639
NmeAIII	GCCGAG	1 cut(s)	21
NotI	GCGGCCGC	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	623
OliI	CACNNNNGTG	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	182, 209, 620
PinAI	ACCGGT	1 cut(s)	640
PluTI	GGCGCC	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	438
PspN4I	GGNNCC	4 cut(s)	190, 423, 424, 639
PspOMI	GGGCCC	1 cut(s)	421
PspPI	GGNCC	7 cut(s)	169, 196, 355, 421, 422, 629, 638
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	298, 530
RsaNI	GTAC	2 cut(s)	297, 529
RseI	CAYNNNNRTG	1 cut(s)	231
Rsr2I	CGGWCCG	1 cut(s)	355
RsrII	CGGWCCG	1 cut(s)	355
SacII	CCGCGG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	370
SapI	GCTCTTC	1 cut(s)	578
Sau3AI	GATC	2 cut(s)	408, 671
Sau96I	GGNCC	7 cut(s)	169, 196, 355, 421, 422, 629, 638
ScrFI	CCNGG	4 cut(s)	143, 144, 167, 265
SduI	GDGCHC	5 cut(s)	153, 228, 402, 425, 438
SetI	ASST	9 cut(s)	24, 63, 75, 111, 369, 393, 552, 595, 608
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	427
SfoI	GGCGCC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	623
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	4 cut(s)	196, 355, 629, 638
SmaI	CCCGGG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	1 cut(s)	491
SspDI	GGCGCC	1 cut(s)	188
StyD4I	CCNGG	4 cut(s)	141, 142, 165, 263
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	2 cut(s)	371, 623
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	491
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	7 cut(s)	137, 140, 326, 344, 347, 350, 353
TfiI	GAWTC	3 cut(s)	182, 209, 620
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	5 cut(s)	16, 19, 22, 255, 388
TspGWI	ACGGA	2 cut(s)	314, 389
TspMI	CCCGGG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	4 cut(s)	196, 355, 629, 638
XmaI	CCCGGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.