Rroxscaffold_4G00278520

acyl-CoA-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007027
Physical Location & Seq
Forward (+)
1479912 .. 1483367
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278520.1

Sequence Viewer

Length: 552 bp
ATGACGGCTCGCGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCAATGCCTCCTGAGGATGCGATGGAGAAGTACATTGATATTGTTAGTGAGCTATATCCTACTTGGACTGATGGTTTGACTGTGAGCAAAGGTGGAGATGGTAGCTCGGTTGGTAATGATTCGAAAGGACCGATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGGAAATGATTTCAAGATGGATGCTATACATGCCTTTGCCAGAGAAGGAGAAGTGGATAATTTGCTTAAATGCATTGATAGTGGTGTTTCAGTTGATGCAAAGGATAGTGAGGGAAGGACCCCATTGCATTGGGCTGTTGATCGTGGCCACCTAAACATGGCCGAGATGCTTGTCAGCAGGAATGCTGATGTTAATGCAAAGGACAATGAGGGCCAAACCGCATTGCATTATGCTGCTGTGTGTGAGAGAGAAGGCATCGCTGAATATCTGGTGAAGAAAAACGCAGACACAAACGTTAAAGACAATGATGGCAACTCTCCGTCTGATCTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000062 GO:0000166 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006810 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009266 GO:0009409 GO:0009505 GO:0009514 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010029 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010162 GO:0010288 GO:0010431 GO:0010876 GO:0012505 GO:0016020 GO:0017076 GO:0021700 GO:0022414 GO:0022611 GO:0030312 GO:0030554 GO:0031090 GO:0031903 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032791 GO:0033036 GO:0033218 GO:0033993 GO:0036094 GO:0036293 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048037 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050662 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0061458 GO:0065007 GO:0070300 GO:0070482 GO:0071695 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:0098827 GO:1900140 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACBP Ank_2 Ank_4 Ank_5

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

4.62

Isoelectric Point (pI)

21.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 1 - 29 7.2e-09 Acyl CoA binding protein
Ank_2 PF12796 72 - 140 3.4e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 81 - 130 3.7e-10 Ankyrin repeats (many copies)
Ank_2 PF12796 82 - 173 9.1e-20 Ankyrin repeats (3 copies)
Ank_5 PF13857 101 - 150 3.4e-12 Ankyrin repeats (many copies)
Ank_3 PF13606 109 - 138 4e-06 Ankyrin repeat
Ank PF00023 110 - 141 1.3e-10 Ankyrin repeat
Ank_4 PF13637 120 - 163 6.1e-08 Ankyrin repeats (many copies)
Ank_5 PF13857 133 - 182 1.6e-08 Ankyrin repeats (many copies)
Ank PF00023 143 - 174 5.7e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 1 cut(s) 435
AclI AACGTT 1 cut(s) 510
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 2 cut(s) 361, 375
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 373
AgeI ACCGGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 2 cut(s) 94, 147
AluI AGCT 2 cut(s) 94, 147
AlwI GGATC 1 cut(s) 220
AoxI GGCC 3 cut(s) 361, 375, 427
ApeKI GCWGC 1 cut(s) 449
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AsiGI ACCGGT 1 cut(s) 181
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 4 cut(s) 170, 179, 333, 427
AsuHPI GGTGA 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 3 cut(s) 170, 179, 333
AxyI CCTNAGG 1 cut(s) 54
BalI TGGCCA 1 cut(s) 363
BbvI GCAGC 1 cut(s) 436
BccI CCATC 6 cut(s) 58, 107, 134, 169, 226, 518
BceAI ACGGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme18I GGWCC 3 cut(s) 170, 179, 333
BmgT120I GGNCC 4 cut(s) 170, 179, 333, 427
BmiI GGNNCC 2 cut(s) 180, 335
BmsI GCATC 5 cut(s) 49, 226, 301, 372, 480
Bpu14I TTCGAA 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 54
Bse3DI GCAATG 3 cut(s) 51, 338, 437
BseGI GGATG 2 cut(s) 64, 241
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 3 cut(s) 51, 338, 437
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 436
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 363, 377, 429
BshTI ACCGGT 1 cut(s) 181
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 3 cut(s) 363, 377, 429
Bsp119I TTCGAA 1 cut(s) 164
Bsp143I GATC 3 cut(s) 212, 355, 541
BspACI CCGC 1 cut(s) 435
BspANI GGCC 3 cut(s) 363, 377, 429
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 180, 335
BspPI GGATC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 164
BsrDI GCAATG 3 cut(s) 51, 338, 437
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 3 cut(s) 212, 355, 541
Bst4CI ACNGT 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 10, 24
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 64, 241
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 215, 358, 544
BstMBI GATC 3 cut(s) 212, 355, 541
BstMWI GCNNNNNNNGC 2 cut(s) 28, 245
BstNSI RCATGY 1 cut(s) 248
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 54
BsuRI GGCC 3 cut(s) 363, 377, 429
BtgZI GCGATG 2 cut(s) 77, 457
BtsCI GGATG 2 cut(s) 64, 241
Cac8I GCNNGC 2 cut(s) 10, 24
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 4 cut(s) 170, 179, 333, 427
Csp6I GTAC 1 cut(s) 73
CspAI ACCGGT 1 cut(s) 181
CviAII CATG 3 cut(s) 27, 245, 373
CviJI RGCY 7 cut(s) 8, 94, 147, 350, 363, 377, 429
CviKI_1 RGCY 7 cut(s) 8, 94, 147, 350, 363, 377, 429
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 54
DpnI GATC 3 cut(s) 214, 357, 543
DpnII GATC 3 cut(s) 212, 355, 541
EaeI YGGCCR 2 cut(s) 361, 375
Eco47I GGWCC 3 cut(s) 170, 179, 333
Eco81I CCTNAGG 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 3 cut(s) 30, 248, 376
FaiI YATR 7 cut(s) 28, 97, 204, 242, 246, 374, 447
FaqI GGGAC 1 cut(s) 192
FatI CATG 3 cut(s) 26, 244, 372
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 71, 248
Fsp4HI GCNGC 1 cut(s) 450
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 450
HaeIII GGCC 3 cut(s) 363, 377, 429
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 30, 248, 376
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 499
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 3 cut(s) 53, 216, 229
HpyAV CCTTC 3 cut(s) 254, 324, 461
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 6 cut(s) 44, 288, 314, 343, 413, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 245
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 3 cut(s) 30, 248, 376
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 3 cut(s) 212, 355, 541
LpnPI CCDG 6 cut(s) 66, 195, 201, 268, 379, 470
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 5 cut(s) 49, 226, 301, 372, 480
MaeII ACGT 1 cut(s) 510
MalI GATC 3 cut(s) 214, 357, 543
MboI GATC 3 cut(s) 212, 355, 541
MboII GAAGA 1 cut(s) 502
MflI RGATCY 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 2 cut(s) 35, 274
MluNI TGGCCA 1 cut(s) 363
MnlI CCTC 6 cut(s) 49, 60, 199, 202, 319, 418
Mox20I TGGCCA 1 cut(s) 363
Mph1103I ATGCAT 1 cut(s) 290
MscI TGGCCA 1 cut(s) 363
MseI TTAA 3 cut(s) 282, 408, 513
Msp20I TGGCCA 1 cut(s) 363
MspI CCGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 403
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 28, 245
NdeII GATC 3 cut(s) 212, 355, 541
NlaIII CATG 3 cut(s) 30, 248, 376
NlaIV GGNNCC 2 cut(s) 180, 335
NmeAIII GCCGAG 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 1 cut(s) 248
NspV TTCGAA 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 161
PinAI ACCGGT 1 cut(s) 181
PkrI GCNGC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 180, 335
PspPI GGNCC 4 cut(s) 170, 179, 333, 427
PspPPI RGGWCCY 1 cut(s) 333
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 282, 408, 513
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 3 cut(s) 212, 355, 541
Sau96I GGNCC 4 cut(s) 170, 179, 333, 427
SetI ASST 5 cut(s) 96, 136, 149, 369, 513
SfaNI GCATC 5 cut(s) 49, 226, 301, 372, 480
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 3 cut(s) 170, 179, 333
Sse9I AATT 2 cut(s) 35, 274
SsiI CCGC 1 cut(s) 435
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 513
TaqI TCGA 1 cut(s) 164
TaqII GACCGA 1 cut(s) 187
TasI AATT 2 cut(s) 35, 274
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 282, 408, 513
Tru9I TTAA 3 cut(s) 282, 408, 513
TseI GCWGC 1 cut(s) 449
TspGWI ACGGA 1 cut(s) 525
VpaK11BI GGWCC 3 cut(s) 170, 179, 333
XceI RCATGY 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.