Rh1CG425300

acyl-CoA-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007027
Physical Location & Seq
Reverse (-)
68413362 .. 68416778
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG425300.1

Sequence Viewer

Length: 903 bp
ATGGGGGGCGACTGGCAGCAGCTGCTCCAATCGGTCGTCCTCGGCCTCATTTTCTCCTACCTACTCGCCAAGCTCATCTCCATAGTCGTCTCCTTCAAGGACGACAACCTCATCATCACACGCGCCAGCACCGCCGGCGCCACGGCCGAGCCCAAACCCGACGACCCGGCCCGCTCCGCCGAATCGGGCGCCTTGGTCCACGAGGCCGATTCGGTGGTGGCGGAGCACGGGAGTGTCAGGAATGACAGCGCCGGCAGCGAGGTCGGGAGCGACGATGACTGGGAAGGCGTGGAGAGTACGGAACTGGACGAGATTTTCAGCGCCGCTACGGCGTTTGTGGCGGCGGCCGCGGCGGACCGGACGAAGGTGTCGACGGAGGCGCAGTTGCAGCTCTATGGGCTCTACAAGATCGCCACTGAGGGCCCCTGTAGCGTGCCCCAGCCTTCCGCGCTGAAAATGACGGCTCGCGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCAATGCCTCCTGAGGATGCGATGGAGAAGTACATTGATATTGTTAGTGAGCTGTATCCTACTTGGACTGATGGTTTGATTGTGAAGAGCAAAGGTGGAGATGGTAGCTCGGTTGGTAATGATTCGAAAGGACCGATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGGAAATGATTTCAAGATGGATGCTATACATGCCTTTGCCAGAGAAGGAGAAGTGGATAATTTGCTTAAATGCATTGATAGTGGTGTTTCAGTTGATGCAAAGGGTTTGTTTCTTCCTATCCATCATGTTTTTAGCTTCATTCAAATTCTTCTCAACACTATCATCCTTCCTGATTCCATGAATATTGCTATACTACAAACTCATATGTACTCTGTTTCTGGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000062 GO:0000166 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006810 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009266 GO:0009409 GO:0009505 GO:0009514 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010029 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010162 GO:0010288 GO:0010431 GO:0010876 GO:0012505 GO:0016020 GO:0017076 GO:0021700 GO:0022414 GO:0022611 GO:0030312 GO:0030554 GO:0031090 GO:0031903 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032791 GO:0033036 GO:0033218 GO:0033993 GO:0036094 GO:0036293 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048037 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050662 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0061458 GO:0065007 GO:0070300 GO:0070482 GO:0071695 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:0098827 GO:1900140 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACBP Ank_2 Ank_4 Ank_5

Protein Analysis

300

Amino Acids

32.06

Weight (kDa)

4.52

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 104 - 181 1.6e-26 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 137, 188
AccBSI CCGCTC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 371
AccII CGCG 4 cut(s) 123, 350, 449, 468
AclWI GGATC 1 cut(s) 679
AcoI YGGCCR 2 cut(s) 144, 345
AcsI RAATTY 1 cut(s) 819
AcyI GRCGYC 2 cut(s) 138, 189
AfaI GTAC 3 cut(s) 298, 530, 884
AfiI CCNNNNNNNGG 1 cut(s) 364
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 3 cut(s) 97, 688, 818
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 6 cut(s) 22, 73, 391, 550, 606, 810
AluI AGCT 6 cut(s) 22, 73, 391, 550, 606, 810
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 679
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 6 cut(s) 43, 144, 168, 204, 345, 421
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 5 cut(s) 16, 19, 22, 255, 388
ApoI RAATTY 1 cut(s) 819
ArsI GACNNNNNNTTYG 2 cut(s) 556, 588
AsiGI ACCGGT 1 cut(s) 640
AspLEI GCGC 8 cut(s) 125, 140, 191, 251, 323, 382, 451, 470
AspS9I GGNCC 7 cut(s) 169, 196, 355, 421, 422, 629, 638
AsuC2I CCSGG 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 623
AvaII GGWCC 4 cut(s) 196, 355, 629, 638
AxyI CCTNAGG 1 cut(s) 510
BaeGI GKGCMC 2 cut(s) 425, 438
BanI GGYRCC 2 cut(s) 137, 188
BanII GRGCYC 3 cut(s) 153, 402, 425
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 5 cut(s) 9, 28, 31, 267, 400
BccI CCATC 6 cut(s) 514, 563, 593, 628, 685, 804
BceAI ACGGC 3 cut(s) 159, 345, 477
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 427
BfoI RGCGCY 4 cut(s) 141, 192, 252, 324
BfuI GTATCC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 4 cut(s) 196, 355, 629, 638
BmgT120I GGNCC 7 cut(s) 169, 196, 355, 421, 422, 629, 638
BmiI GGNNCC 5 cut(s) 139, 190, 423, 424, 639
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 3 cut(s) 505, 685, 760
BmuI ACTGGG 1 cut(s) 289
Bpu14I TTCGAA 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 167
BsaHI GRCGYC 2 cut(s) 138, 189
BsaJI CCNNGG 4 cut(s) 40, 141, 192, 348
BsaWI WCCGGW 2 cut(s) 357, 640
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 3 cut(s) 134, 251, 640
Bse1I ACTGG 3 cut(s) 17, 284, 309
Bse21I CCTNAGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 507
BseDI CCNNGG 4 cut(s) 40, 141, 192, 348
BseGI GGATG 3 cut(s) 520, 700, 837
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 408, 501
BseNI ACTGG 3 cut(s) 17, 284, 309
BseRI GAGGAG 1 cut(s) 680
BseSI GKGCMC 2 cut(s) 425, 438
BseX3I CGGCCG 2 cut(s) 144, 345
BseXI GCAGC 5 cut(s) 9, 28, 31, 267, 400
BseYI CCCAGC 1 cut(s) 438
Bsh1236I CGCG 4 cut(s) 123, 350, 449, 468
Bsh1285I CGRYCG 3 cut(s) 36, 147, 348
BshFI GGCC 6 cut(s) 45, 146, 170, 206, 347, 423
BshNI GGYRCC 2 cut(s) 137, 188
BshTI ACCGGT 1 cut(s) 640
BsiEI CGRYCG 3 cut(s) 36, 147, 348
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 5 cut(s) 135, 167, 252, 358, 641
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 651
BsnI GGCC 6 cut(s) 45, 146, 170, 206, 347, 423
Bsp119I TTCGAA 1 cut(s) 623
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 5 cut(s) 153, 228, 402, 425, 438
Bsp143I GATC 2 cut(s) 408, 671
BspANI GGCC 6 cut(s) 45, 146, 170, 206, 347, 423
BspCNI CTCAG 2 cut(s) 409, 502
BspFNI CGCG 4 cut(s) 123, 350, 449, 468
BspLI GGNNCC 5 cut(s) 139, 190, 423, 424, 639
BspPI GGATC 1 cut(s) 679
BspQI GCTCTTC 1 cut(s) 578
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 2 cut(s) 137, 188
BsrBI CCGCTC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 3 cut(s) 134, 251, 640
BsrI ACTGG 3 cut(s) 17, 284, 309
BssAI RCCGGY 3 cut(s) 134, 251, 640
BssECI CCNNGG 4 cut(s) 40, 141, 192, 348
BssMI GATC 2 cut(s) 408, 671
BssNI GRCGYC 2 cut(s) 138, 189
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 578
BstACI GRCGYC 2 cut(s) 138, 189
BstAPI GCANNNNNTGC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 7 cut(s) 127, 136, 172, 253, 434, 466, 480
BstDEI CTNAG 2 cut(s) 417, 510
BstDSI CCRYGG 2 cut(s) 141, 348
BstF5I GGATG 3 cut(s) 520, 700, 837
BstFNI CGCG 4 cut(s) 123, 350, 449, 468
BstH2I RGCGCY 4 cut(s) 141, 192, 252, 324
BstHHI GCGC 8 cut(s) 125, 140, 191, 251, 323, 382, 451, 470
BstKTI GATC 2 cut(s) 411, 674
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 408, 671
BstMCI CGRYCG 3 cut(s) 36, 147, 348
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 427
BstSLI GKGCMC 2 cut(s) 425, 438
BstUI CGCG 4 cut(s) 123, 350, 449, 468
BstV1I GCAGC 5 cut(s) 9, 28, 31, 267, 400
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BstZI CGGCCG 2 cut(s) 144, 345
Bsu36I CCTNAGG 1 cut(s) 510
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 6 cut(s) 45, 146, 170, 206, 347, 423
BtgI CCRYGG 2 cut(s) 141, 348
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 3 cut(s) 520, 700, 837
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 7 cut(s) 127, 136, 172, 253, 434, 466, 480
CaiI CAGNNNCTG 1 cut(s) 22
CciNI GCGGCCGC 1 cut(s) 345
CfoI GCGC 8 cut(s) 125, 140, 191, 251, 323, 382, 451, 470
Cfr10I RCCGGY 3 cut(s) 134, 251, 640
Cfr13I GGNCC 7 cut(s) 169, 196, 355, 421, 422, 629, 638
Cfr42I CCGCGG 1 cut(s) 351
CpoI CGGWCCG 1 cut(s) 355
Csp6I GTAC 3 cut(s) 297, 529, 883
CspAI ACCGGT 1 cut(s) 640
CspI CGGWCCG 1 cut(s) 355
CviAII CATG 4 cut(s) 483, 704, 800, 853
CviQI GTAC 3 cut(s) 297, 529, 883
DdeI CTNAG 2 cut(s) 417, 510
DinI GGCGCC 2 cut(s) 139, 190
DpnI GATC 2 cut(s) 410, 673
DpnII GATC 2 cut(s) 408, 671
DrdI GACNNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 367
EaeI YGGCCR 2 cut(s) 144, 345
EagI CGGCCG 2 cut(s) 144, 345
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
EciI GGCGGA 3 cut(s) 166, 236, 368
EclXI CGGCCG 2 cut(s) 144, 345
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 3 cut(s) 153, 402, 425
Eco47I GGWCC 4 cut(s) 196, 355, 629, 638
Eco52I CGGCCG 2 cut(s) 144, 345
Eco81I CCTNAGG 1 cut(s) 510
EcoO109I RGGNCCY 2 cut(s) 421, 422
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 749
EcoT38I GRGCYC 3 cut(s) 153, 402, 425
EgeI GGCGCC 2 cut(s) 139, 190
EheI GGCGCC 2 cut(s) 139, 190
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 4 cut(s) 486, 707, 803, 856
FaqI GGGAC 1 cut(s) 651
FatI CATG 4 cut(s) 482, 703, 799, 852
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 1 cut(s) 879
FblI GTMKAC 1 cut(s) 371
FokI GGATG 3 cut(s) 527, 707, 824
FriOI GRGCYC 3 cut(s) 153, 402, 425
GlaI GCGC 8 cut(s) 124, 139, 190, 250, 322, 381, 450, 469
GsaI CCCAGC 1 cut(s) 442
HaeII RGCGCY 4 cut(s) 141, 192, 252, 324
HaeIII GGCC 6 cut(s) 45, 146, 170, 206, 347, 423
HapII CCGG 5 cut(s) 135, 167, 252, 358, 641
HhaI GCGC 8 cut(s) 125, 140, 191, 251, 323, 382, 451, 470
Hin1I GRCGYC 2 cut(s) 138, 189
Hin1II CATG 4 cut(s) 486, 707, 803, 856
Hin6I GCGC 8 cut(s) 123, 138, 189, 249, 321, 380, 449, 468
HinP1I GCGC 8 cut(s) 123, 138, 189, 249, 321, 380, 449, 468
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 4 cut(s) 182, 209, 620, 848
HpaII CCGG 5 cut(s) 135, 167, 252, 358, 641
Hpy166II GTNNAC 2 cut(s) 199, 372
Hpy188III TCNNGA 6 cut(s) 238, 265, 509, 675, 688, 845
Hpy8I GTNNAC 2 cut(s) 199, 372
Hpy99I CGWCG 3 cut(s) 164, 275, 376
HpyAV CCTTC 6 cut(s) 103, 278, 358, 453, 713, 851
HpyCH4V TGCA 4 cut(s) 388, 500, 747, 773
HpyF3I CTNAG 2 cut(s) 417, 510
Hsp92I GRCGYC 2 cut(s) 138, 189
Hsp92II CATG 4 cut(s) 486, 707, 803, 856
HspAI GCGC 8 cut(s) 123, 138, 189, 249, 321, 380, 449, 468
KasI GGCGCC 2 cut(s) 137, 188
KroI GCCGGC 2 cut(s) 134, 251
KroNI GCCGGC 2 cut(s) 136, 253
KspI CCGCGG 1 cut(s) 351
Kzo9I GATC 2 cut(s) 408, 671
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 4 cut(s) 30, 179, 223, 267
Lsp1109I GCAGC 5 cut(s) 9, 28, 31, 267, 400
LweI GCATC 3 cut(s) 505, 685, 760
MalI GATC 2 cut(s) 410, 673
MbiI CCGCTC 1 cut(s) 174
MboI GATC 2 cut(s) 408, 671
MboII GAAGA 3 cut(s) 595, 779, 815
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 5 cut(s) 153, 228, 402, 425, 438
MluCI AATT 3 cut(s) 491, 733, 819
Mly113I GGCGCC 2 cut(s) 138, 189
Mph1103I ATGCAT 1 cut(s) 749
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 2 cut(s) 134, 251
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 2 cut(s) 22, 350
MspI CCGG 5 cut(s) 135, 167, 252, 358, 641
MspR9I CCNGG 1 cut(s) 167
MvnI CGCG 4 cut(s) 123, 350, 449, 468
NaeI GCCGGC 2 cut(s) 136, 253
NarI GGCGCC 2 cut(s) 138, 189
NciI CCSGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 879
NdeII GATC 2 cut(s) 408, 671
NgoMIV GCCGGC 2 cut(s) 134, 251
NlaIII CATG 4 cut(s) 486, 707, 803, 856
NlaIV GGNNCC 5 cut(s) 139, 190, 423, 424, 639
NmeAIII GCCGAG 2 cut(s) 21, 172
NotI GCGGCCGC 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 749
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 623
OliI CACNNNNGTG 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 578
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 368, 629
PdiI GCCGGC 2 cut(s) 136, 253
PfeI GAWTC 4 cut(s) 182, 209, 620, 848
PinAI ACCGGT 1 cut(s) 640
PluTI GGCGCC 2 cut(s) 141, 192
PspFI CCCAGC 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 139, 190, 423, 424, 639
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 7 cut(s) 169, 196, 355, 421, 422, 629, 638
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 3 cut(s) 298, 530, 884
RsaNI GTAC 3 cut(s) 297, 529, 883
RseI CAYNNNNRTG 1 cut(s) 231
Rsr2I CGGWCCG 1 cut(s) 355
RsrII CGGWCCG 1 cut(s) 355
SacII CCGCGG 1 cut(s) 351
SalI GTCGAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 741
Sau3AI GATC 2 cut(s) 408, 671
Sau96I GGNCC 7 cut(s) 169, 196, 355, 421, 422, 629, 638
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 5 cut(s) 153, 228, 402, 425, 438
SfaNI GCATC 3 cut(s) 505, 685, 760
SfcI CTRYAG 1 cut(s) 427
SfoI GGCGCC 2 cut(s) 139, 190
Sfr303I CCGCGG 1 cut(s) 351
SfuI TTCGAA 1 cut(s) 623
SgrAI CRCCGGYG 1 cut(s) 134
SgrBI CCGCGG 1 cut(s) 351
SinI GGWCC 4 cut(s) 196, 355, 629, 638
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 3 cut(s) 491, 733, 819
SspDI GGCGCC 2 cut(s) 137, 188
SspI AATATT 1 cut(s) 859
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 2 cut(s) 371, 623
TaqII GACCGA 2 cut(s) 22, 646
TasI AATT 3 cut(s) 491, 733, 819
TatI WGTACW 2 cut(s) 528, 882
TauI GCSGC 5 cut(s) 326, 344, 347, 350, 353
TfiI GAWTC 4 cut(s) 182, 209, 620, 848
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 421
TseI GCWGC 5 cut(s) 16, 19, 22, 255, 388
TspDTI ATGAA 2 cut(s) 802, 869
TspGWI ACGGA 2 cut(s) 314, 389
TspRI CASTG 1 cut(s) 421
VpaK11BI GGWCC 4 cut(s) 196, 355, 629, 638
XapI RAATTY 1 cut(s) 819
XceI RCATGY 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.