Rh1BG410900

acyl-CoA-binding domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007027
Physical Location & Seq
Reverse (-)
53278465 .. 53281873
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG410900.1

Sequence Viewer

Length: 894 bp
ATGGGGGGCGACTGGCAGCAGCTGCTCCAATCGGTCGTCCTCGGCCTCATTTTCTCCTACCTACTCGCCAAGCTCATCTCCATAGTCGTCTCCTTCAAGGACGACAACCTCATCATCACACGCGCCGGCGCCCCGGCCGAGCCCAAACCCGACGACCCGGCCCGCTCCGCCGAATCGGGCGCCTTGGTCCACGAGGCCGATTCGGTGGTGGCGGAGCACGGGAGTGTCAGGAACGACAGCGCCGGCAGCGAGGCTGGGAGCGACGATGACTGGGAAGGCGTGGAGAGTACGGAACTGGACGAGATTTTCAGCGCCGCTACGGCGTTTGTGGCGGCGGCCGCGGCGGACCGGACGAAGGTGTCGACGGAGGCGCAGTTGCAGCTCTATGGGCTCTACAAGATCGCCACTGAGGGCCCTTGTAGCGTGCCCCAGCCTTCCGCGCTGAAAATGACGGCTCGCGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCAATGCCTCCTGAGGATGCGATGGAGAAGTACATTGATATTGTTAGTGAGCTGTATCCTACTTGGACTGATGGTTTGATTGTGAAGAGCAAAGGTGGAGATGGTAGCTCGGTTGGTAATGATTCGAAAGGACCGATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGGAAATGATTTCAAGATGGATGCTATACATGCCTTTGCCAGAGAAGGAGAAGTGGATAATTTGCTTAAATGCATTGATAGTGGTGTTTCAGTTGATGCAAAGGGTTTGTTTCTTCCTATCCATCATGTTTTTAGCTTCATTCAAATTCTTCTCAACACTATCATCCTTCCTGATTCCATGAATATTGCTATACTACAAACTCATATGTACTCTGTTTCTGGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000062 GO:0000166 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006810 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009266 GO:0009409 GO:0009505 GO:0009514 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010029 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010162 GO:0010288 GO:0010431 GO:0010876 GO:0012505 GO:0016020 GO:0017076 GO:0021700 GO:0022414 GO:0022611 GO:0030312 GO:0030554 GO:0031090 GO:0031903 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032791 GO:0033036 GO:0033218 GO:0033993 GO:0036094 GO:0036293 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048037 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050662 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0061458 GO:0065007 GO:0070300 GO:0070482 GO:0071695 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:0098827 GO:1900140 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACBP Ank_2 Ank_4 Ank_5

Protein Analysis

297

Amino Acids

31.77

Weight (kDa)

4.52

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 101 - 178 1.6e-26 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 358
AccB1I GGYRCC 2 cut(s) 128, 179
AccBSI CCGCTC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 362
AccII CGCG 4 cut(s) 123, 341, 440, 459
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 2 cut(s) 135, 336
AcsI RAATTY 1 cut(s) 810
AcyI GRCGYC 2 cut(s) 129, 180
AfaI GTAC 3 cut(s) 289, 521, 875
AfiI CCNNNNNNNGG 1 cut(s) 355
AgeI ACCGGT 1 cut(s) 631
AgsI TTSAA 3 cut(s) 97, 679, 809
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 6 cut(s) 22, 73, 382, 541, 597, 801
AluI AGCT 6 cut(s) 22, 73, 382, 541, 597, 801
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 670
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 6 cut(s) 43, 135, 159, 195, 336, 412
ApaI GGGCCC 1 cut(s) 416
ApeKI GCWGC 5 cut(s) 16, 19, 22, 246, 379
ApoI RAATTY 1 cut(s) 810
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AsiGI ACCGGT 1 cut(s) 631
AspLEI GCGC 8 cut(s) 125, 131, 182, 242, 314, 373, 442, 461
AspS9I GGNCC 7 cut(s) 160, 187, 346, 412, 413, 620, 629
AsuC2I CCSGG 2 cut(s) 134, 158
AsuII TTCGAA 1 cut(s) 614
AvaII GGWCC 4 cut(s) 187, 346, 620, 629
AxyI CCTNAGG 1 cut(s) 501
BaeGI GKGCMC 2 cut(s) 416, 429
BanI GGYRCC 2 cut(s) 128, 179
BanII GRGCYC 3 cut(s) 144, 393, 416
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 9, 28, 31, 258, 391
BccI CCATC 6 cut(s) 505, 554, 584, 619, 676, 795
BceAI ACGGC 2 cut(s) 336, 468
BciVI GTATCC 1 cut(s) 555
BcnI CCSGG 2 cut(s) 134, 158
BcoDI GTCTC 1 cut(s) 94
BfoI RGCGCY 4 cut(s) 132, 183, 243, 315
BfuI GTATCC 1 cut(s) 555
BglI GCCNNNNNGGC 1 cut(s) 320
Bme1390I CCNGG 2 cut(s) 134, 158
Bme18I GGWCC 4 cut(s) 187, 346, 620, 629
BmgT120I GGNCC 7 cut(s) 160, 187, 346, 412, 413, 620, 629
BmiI GGNNCC 4 cut(s) 130, 181, 414, 630
BmrFI CCNGG 2 cut(s) 134, 158
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 3 cut(s) 496, 676, 751
BmuI ACTGGG 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 614
BpuMI CCSGG 2 cut(s) 134, 158
BsaHI GRCGYC 2 cut(s) 129, 180
BsaJI CCNNGG 4 cut(s) 40, 132, 183, 339
BsaWI WCCGGW 2 cut(s) 348, 631
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 3 cut(s) 125, 242, 631
Bse1I ACTGG 3 cut(s) 17, 275, 300
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 498
BseDI CCNNGG 4 cut(s) 40, 132, 183, 339
BseGI GGATG 3 cut(s) 511, 691, 828
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 399, 492
BseNI ACTGG 3 cut(s) 17, 275, 300
BseRI GAGGAG 1 cut(s) 671
BseSI GKGCMC 2 cut(s) 416, 429
BseX3I CGGCCG 2 cut(s) 135, 336
BseXI GCAGC 5 cut(s) 9, 28, 31, 258, 391
BseYI CCCAGC 2 cut(s) 254, 429
Bsh1236I CGCG 4 cut(s) 123, 341, 440, 459
Bsh1285I CGRYCG 3 cut(s) 36, 138, 339
BshFI GGCC 6 cut(s) 45, 137, 161, 197, 338, 414
BshNI GGYRCC 2 cut(s) 128, 179
BshTI ACCGGT 1 cut(s) 631
BsiEI CGRYCG 3 cut(s) 36, 138, 339
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 6 cut(s) 126, 134, 158, 243, 349, 632
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 6 cut(s) 45, 137, 161, 197, 338, 414
Bsp119I TTCGAA 1 cut(s) 614
Bsp120I GGGCCC 1 cut(s) 412
Bsp1286I GDGCHC 5 cut(s) 144, 219, 393, 416, 429
Bsp143I GATC 2 cut(s) 399, 662
BspANI GGCC 6 cut(s) 45, 137, 161, 197, 338, 414
BspCNI CTCAG 2 cut(s) 400, 493
BspFNI CGCG 4 cut(s) 123, 341, 440, 459
BspLI GGNNCC 4 cut(s) 130, 181, 414, 630
BspPI GGATC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 614
BspT107I GGYRCC 2 cut(s) 128, 179
BsrBI CCGCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 3 cut(s) 125, 242, 631
BsrI ACTGG 3 cut(s) 17, 275, 300
BssAI RCCGGY 3 cut(s) 125, 242, 631
BssECI CCNNGG 4 cut(s) 40, 132, 183, 339
BssMI GATC 2 cut(s) 399, 662
BssNI GRCGYC 2 cut(s) 129, 180
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 2 cut(s) 129, 180
BstAPI GCANNNNNTGC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 614
BstC8I GCNNGC 6 cut(s) 127, 163, 244, 425, 457, 471
BstDEI CTNAG 2 cut(s) 408, 501
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 511, 691, 828
BstFNI CGCG 4 cut(s) 123, 341, 440, 459
BstH2I RGCGCY 4 cut(s) 132, 183, 243, 315
BstHHI GCGC 8 cut(s) 125, 131, 182, 242, 314, 373, 442, 461
BstKTI GATC 2 cut(s) 402, 665
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 399, 662
BstMCI CGRYCG 3 cut(s) 36, 138, 339
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 132, 156
BstSLI GKGCMC 2 cut(s) 416, 429
BstUI CGCG 4 cut(s) 123, 341, 440, 459
BstV1I GCAGC 5 cut(s) 9, 28, 31, 258, 391
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BstZI CGGCCG 2 cut(s) 135, 336
Bsu36I CCTNAGG 1 cut(s) 501
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 6 cut(s) 45, 137, 161, 197, 338, 414
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 3 cut(s) 511, 691, 828
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 6 cut(s) 127, 163, 244, 425, 457, 471
CaiI CAGNNNCTG 1 cut(s) 22
CciNI GCGGCCGC 1 cut(s) 336
CfoI GCGC 8 cut(s) 125, 131, 182, 242, 314, 373, 442, 461
Cfr10I RCCGGY 3 cut(s) 125, 242, 631
Cfr13I GGNCC 7 cut(s) 160, 187, 346, 412, 413, 620, 629
Cfr42I CCGCGG 1 cut(s) 342
CpoI CGGWCCG 1 cut(s) 346
Csp6I GTAC 3 cut(s) 288, 520, 874
CspAI ACCGGT 1 cut(s) 631
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 4 cut(s) 474, 695, 791, 844
CviQI GTAC 3 cut(s) 288, 520, 874
DdeI CTNAG 2 cut(s) 408, 501
DinI GGCGCC 2 cut(s) 130, 181
DpnI GATC 2 cut(s) 401, 664
DpnII GATC 2 cut(s) 399, 662
DrdI GACNNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 358
EaeI YGGCCR 2 cut(s) 135, 336
EagI CGGCCG 2 cut(s) 135, 336
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
EciI GGCGGA 3 cut(s) 157, 227, 359
EclXI CGGCCG 2 cut(s) 135, 336
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 3 cut(s) 144, 393, 416
Eco47I GGWCC 4 cut(s) 187, 346, 620, 629
Eco52I CGGCCG 2 cut(s) 135, 336
Eco81I CCTNAGG 1 cut(s) 501
EcoO109I RGGNCCY 2 cut(s) 412, 413
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 740
EcoT38I GRGCYC 3 cut(s) 144, 393, 416
EgeI GGCGCC 2 cut(s) 130, 181
EheI GGCGCC 2 cut(s) 130, 181
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 4 cut(s) 477, 698, 794, 847
FaqI GGGAC 1 cut(s) 642
FatI CATG 4 cut(s) 473, 694, 790, 843
FauI CCCGC 1 cut(s) 170
FauNDI CATATG 1 cut(s) 870
FblI GTMKAC 1 cut(s) 362
FokI GGATG 3 cut(s) 518, 698, 815
FriOI GRGCYC 3 cut(s) 144, 393, 416
GlaI GCGC 8 cut(s) 124, 130, 181, 241, 313, 372, 441, 460
GsaI CCCAGC 2 cut(s) 258, 433
HaeII RGCGCY 4 cut(s) 132, 183, 243, 315
HaeIII GGCC 6 cut(s) 45, 137, 161, 197, 338, 414
HapII CCGG 6 cut(s) 126, 134, 158, 243, 349, 632
HhaI GCGC 8 cut(s) 125, 131, 182, 242, 314, 373, 442, 461
Hin1I GRCGYC 2 cut(s) 129, 180
Hin1II CATG 4 cut(s) 477, 698, 794, 847
Hin6I GCGC 8 cut(s) 123, 129, 180, 240, 312, 371, 440, 459
HinP1I GCGC 8 cut(s) 123, 129, 180, 240, 312, 371, 440, 459
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 4 cut(s) 173, 200, 611, 839
HpaII CCGG 6 cut(s) 126, 134, 158, 243, 349, 632
Hpy166II GTNNAC 2 cut(s) 190, 363
Hpy188III TCNNGA 5 cut(s) 229, 500, 666, 679, 836
Hpy8I GTNNAC 2 cut(s) 190, 363
Hpy99I CGWCG 3 cut(s) 155, 266, 367
HpyAV CCTTC 6 cut(s) 103, 269, 349, 444, 704, 842
HpyCH4V TGCA 4 cut(s) 379, 491, 738, 764
HpyF3I CTNAG 2 cut(s) 408, 501
Hsp92I GRCGYC 2 cut(s) 129, 180
Hsp92II CATG 4 cut(s) 477, 698, 794, 847
HspAI GCGC 8 cut(s) 123, 129, 180, 240, 312, 371, 440, 459
KasI GGCGCC 2 cut(s) 128, 179
KroI GCCGGC 2 cut(s) 125, 242
KroNI GCCGGC 2 cut(s) 127, 244
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 2 cut(s) 399, 662
LguI GCTCTTC 1 cut(s) 569
LmnI GCTCC 4 cut(s) 30, 170, 214, 258
Lsp1109I GCAGC 5 cut(s) 9, 28, 31, 258, 391
LweI GCATC 3 cut(s) 496, 676, 751
MalI GATC 2 cut(s) 401, 664
MbiI CCGCTC 1 cut(s) 165
MboI GATC 2 cut(s) 399, 662
MboII GAAGA 3 cut(s) 586, 770, 806
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 5 cut(s) 144, 219, 393, 416, 429
MluCI AATT 3 cut(s) 482, 724, 810
Mly113I GGCGCC 2 cut(s) 129, 180
Mph1103I ATGCAT 1 cut(s) 740
MreI CGCCGGCG 1 cut(s) 125
MroNI GCCGGC 2 cut(s) 125, 242
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 22, 341
MspI CCGG 6 cut(s) 126, 134, 158, 243, 349, 632
MspR9I CCNGG 2 cut(s) 134, 158
MvnI CGCG 4 cut(s) 123, 341, 440, 459
NaeI GCCGGC 2 cut(s) 127, 244
NarI GGCGCC 2 cut(s) 129, 180
NciI CCSGG 2 cut(s) 134, 158
NdeI CATATG 1 cut(s) 870
NdeII GATC 2 cut(s) 399, 662
NgoMIV GCCGGC 2 cut(s) 125, 242
NlaIII CATG 4 cut(s) 477, 698, 794, 847
NlaIV GGNNCC 4 cut(s) 130, 181, 414, 630
NmeAIII GCCGAG 2 cut(s) 21, 163
NotI GCGGCCGC 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 740
NspI RCATGY 1 cut(s) 698
NspV TTCGAA 1 cut(s) 614
OliI CACNNNNGTG 1 cut(s) 222
PciSI GCTCTTC 1 cut(s) 569
PcsI WCGNNNNNNNCGW 2 cut(s) 359, 620
PdiI GCCGGC 2 cut(s) 127, 244
PfeI GAWTC 4 cut(s) 173, 200, 611, 839
PinAI ACCGGT 1 cut(s) 631
PluTI GGCGCC 2 cut(s) 132, 183
PspFI CCCAGC 2 cut(s) 254, 429
PspN4I GGNNCC 4 cut(s) 130, 181, 414, 630
PspOMI GGGCCC 1 cut(s) 412
PspPI GGNCC 7 cut(s) 160, 187, 346, 412, 413, 620, 629
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 3 cut(s) 289, 521, 875
RsaNI GTAC 3 cut(s) 288, 520, 874
RseI CAYNNNNRTG 1 cut(s) 222
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SacII CCGCGG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 569
SaqAI TTAA 1 cut(s) 732
Sau3AI GATC 2 cut(s) 399, 662
Sau96I GGNCC 7 cut(s) 160, 187, 346, 412, 413, 620, 629
ScrFI CCNGG 2 cut(s) 134, 158
SduI GDGCHC 5 cut(s) 144, 219, 393, 416, 429
SfaNI GCATC 3 cut(s) 496, 676, 751
SfoI GGCGCC 2 cut(s) 130, 181
Sfr303I CCGCGG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 614
SgrAI CRCCGGYG 1 cut(s) 125
SgrBI CCGCGG 1 cut(s) 342
SinI GGWCC 4 cut(s) 187, 346, 620, 629
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 3 cut(s) 482, 724, 810
SspDI GGCGCC 2 cut(s) 128, 179
SspI AATATT 1 cut(s) 850
StyD4I CCNGG 2 cut(s) 132, 156
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 2 cut(s) 362, 614
TaqII GACCGA 2 cut(s) 22, 637
TasI AATT 3 cut(s) 482, 724, 810
TatI WGTACW 2 cut(s) 519, 873
TauI GCSGC 5 cut(s) 317, 335, 338, 341, 344
TfiI GAWTC 4 cut(s) 173, 200, 611, 839
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 1 cut(s) 412
TseI GCWGC 5 cut(s) 16, 19, 22, 246, 379
TspDTI ATGAA 2 cut(s) 793, 860
TspGWI ACGGA 2 cut(s) 305, 380
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 4 cut(s) 187, 346, 620, 629
XapI RAATTY 1 cut(s) 810
XceI RCATGY 1 cut(s) 698
XmiI GTMKAC 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.