AT4G27900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003858
Physical Location & Seq
Forward (+)
13890472 .. 13893073
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27900.2

Sequence Viewer

Length: 786 bp
ATGTATGCAGAAACTAGCTTAGCTTTCCGATTCATGCAGAGTTCTTCTTCTCCAGAGATTCACCAATTTGAAGACCTCTTTAAATCCTACAAGCTCTCTGATGAAATGAACAATCTTGTTGAGGCAAGTGAGTATGATTTTGGAGAAGAGAGTGACCTATTCAAAGCCCCTGAGCCGATTATTGAAGAACCAATGTTAGCTGTTGATCCCCTCTCTCAAGAGCTTGTTGAACTCGGTGATCTCGGGTCGTTGCAGAGTGACCAACAGCTTATAGACAAGGCTTTCTACGACTGTGAGCAGGACCTCCTGGTGAAATCAGCCATGGAGTCTCCGCTCTCCGAGGTACTAGACATCAAGAACATCTCTTTAGTGGCAAAAATGGACAACGATGTGAAGAGTACGAGTGTAGTCGTCTCTGATGTCCCAATTCCGAAGAGTGTGAGCTCGGGAAACTTGAGCTCAATGGATATGGTCGAGCACAAGGATGCGGTGATTCAGGGATTCCCTGATTTCCCTCCAGTGGATTATGGGATGAGAAGAGCCTTCAGTGAAAGCGATATACAGACACTGGGGACTGGAAATACGGGTCTTGTTCAGTCTCAGTTGGATCGAATAATCATAAGTTGCACCTCTGAGGACCGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAAGCGAAATTTCGGGCGTAAAATCAAGTATGCTTGTAGGAAGGCACTTGCAGACAGTCAACCGAGGATCCGAGGAAGGTTTGCAAAAACAGAGGAGATGCAGAAATGA

Protein Analysis

261

Amino Acids

29.45

Weight (kDa)

4.86

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 214 - 256 8.2e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 334
AciI CCGC 3 cut(s) 332, 488, 640
AclWI GGATC 4 cut(s) 200, 615, 739, 752
AcsI RAATTY 1 cut(s) 685
AcuI CTGAAG 1 cut(s) 529
AfaI GTAC 2 cut(s) 345, 400
AfiI CCNNNNNNNGG 1 cut(s) 520
AgsI TTSAA 4 cut(s) 71, 163, 185, 230
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 9 cut(s) 18, 23, 94, 200, 223, 268, 444, 459, 652
AluI AGCT 9 cut(s) 18, 23, 94, 200, 223, 268, 444, 459, 652
Alw21I GWGCWC 3 cut(s) 446, 461, 480
Alw26I GTCTC 3 cut(s) 333, 418, 603
AlwI GGATC 4 cut(s) 200, 615, 739, 752
AlwNI CAGNNNCTG 1 cut(s) 568
Ama87I CYCGRG 2 cut(s) 242, 445
ApoI RAATTY 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 301, 637
AsuHPI GGTGA 4 cut(s) 53, 248, 322, 502
AvaI CYCGRG 2 cut(s) 242, 445
AvaII GGWCC 2 cut(s) 301, 637
BamHI GGATCC 1 cut(s) 744
BanII GRGCYC 2 cut(s) 446, 461
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 3 cut(s) 446, 461, 480
BceAI ACGGC 1 cut(s) 627
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 3 cut(s) 333, 418, 603
BfaI CTAG 2 cut(s) 15, 347
BlpI GCTNAGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 301, 637
BmeT110I CYCGRG 2 cut(s) 242, 445
BmgT120I GGNCC 2 cut(s) 301, 637
BmiI GGNNCC 1 cut(s) 746
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 2 cut(s) 475, 765
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 36, 501
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 201, 475
BsaJI CCNNGG 4 cut(s) 321, 339, 740, 748
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 3 cut(s) 518, 573, 580
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 4 cut(s) 321, 339, 740, 748
BseGI GGATG 2 cut(s) 490, 537
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 162, 614, 624
BseNI ACTGG 3 cut(s) 518, 573, 580
BseRI GAGGAG 1 cut(s) 785
BsiHKAI GWGCWC 3 cut(s) 446, 461, 480
BsiHKCI CYCGRG 2 cut(s) 242, 445
BslFI GGGAC 2 cut(s) 407, 586
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 3 cut(s) 333, 418, 603
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 2 cut(s) 407, 586
BsoBI CYCGRG 2 cut(s) 242, 445
Bsp1286I GDGCHC 3 cut(s) 446, 461, 480
Bsp143I GATC 4 cut(s) 205, 238, 607, 744
Bsp1720I GCTNAGC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 3 cut(s) 332, 488, 640
BspCNI CTCAG 3 cut(s) 163, 613, 625
BspLI GGNNCC 1 cut(s) 746
BspPI GGATC 4 cut(s) 200, 615, 739, 752
BspQI GCTCTTC 2 cut(s) 532, 668
BsrBI CCGCTC 1 cut(s) 334
BsrI ACTGG 3 cut(s) 518, 573, 580
BssECI CCNNGG 4 cut(s) 321, 339, 740, 748
BssMI GATC 4 cut(s) 205, 238, 607, 744
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 293, 734
Bst6I CTCTTC 5 cut(s) 141, 389, 428, 532, 668
BstC8I GCNNGC 1 cut(s) 680
BstDEI CTNAG 4 cut(s) 19, 171, 600, 633
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 490, 537
BstKTI GATC 4 cut(s) 208, 241, 610, 747
BstMAI GTCTC 3 cut(s) 333, 418, 603
BstMBI GATC 4 cut(s) 205, 238, 607, 744
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 490, 537
BtsIMutI CAGTG 3 cut(s) 525, 553, 566
Cac8I GCNNGC 1 cut(s) 680
CaiI CAGNNNCTG 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 301, 637
Csp6I GTAC 2 cut(s) 344, 399
CviAII CATG 2 cut(s) 34, 322
CviQI GTAC 2 cut(s) 344, 399
DdeI CTNAG 4 cut(s) 19, 171, 600, 633
DpnI GATC 4 cut(s) 207, 240, 609, 746
DpnII GATC 4 cut(s) 205, 238, 607, 744
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 5 cut(s) 141, 389, 428, 532, 668
EarI CTCTTC 5 cut(s) 141, 389, 428, 532, 668
Ecl136II GAGCTC 2 cut(s) 444, 459
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 2 cut(s) 446, 461
Eco47I GGWCC 2 cut(s) 301, 637
Eco53kI GAGCTC 2 cut(s) 444, 459
Eco57I CTGAAG 1 cut(s) 529
Eco88I CYCGRG 2 cut(s) 242, 445
EcoICRI GAGCTC 2 cut(s) 444, 459
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 2 cut(s) 446, 461
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 2 cut(s) 37, 325
FaqI GGGAC 2 cut(s) 407, 586
FatI CATG 2 cut(s) 33, 321
FokI GGATG 2 cut(s) 497, 544
FriOI GRGCYC 2 cut(s) 446, 461
FspBI CTAG 2 cut(s) 15, 347
GsuI CTGGAG 2 cut(s) 36, 501
Hin1II CATG 2 cut(s) 37, 325
HincII GTYRAC 1 cut(s) 737
HindII GTYRAC 1 cut(s) 737
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 5 cut(s) 30, 58, 326, 493, 501
HphI GGTGA 4 cut(s) 53, 248, 322, 502
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 7 cut(s) 29, 100, 340, 418, 432, 634, 749
Hpy188III TCNNGA 5 cut(s) 53, 218, 355, 447, 657
Hpy8I GTNNAC 1 cut(s) 737
HpyAV CCTTC 3 cut(s) 553, 712, 747
HpyCH4III ACNGT 2 cut(s) 293, 734
HpyCH4V TGCA 7 cut(s) 8, 37, 253, 627, 728, 761, 778
HpyF3I CTNAG 4 cut(s) 19, 171, 600, 633
Hsp92II CATG 2 cut(s) 37, 325
Kzo9I GATC 4 cut(s) 205, 238, 607, 744
LguI GCTCTTC 2 cut(s) 532, 668
LweI GCATC 2 cut(s) 475, 765
MaeI CTAG 2 cut(s) 15, 347
MaeIII GTNAC 2 cut(s) 152, 257
MalI GATC 4 cut(s) 207, 240, 609, 746
MbiI CCGCTC 1 cut(s) 334
MboI GATC 4 cut(s) 205, 238, 607, 744
MboII GAAGA 9 cut(s) 36, 39, 83, 158, 197, 406, 445, 549, 685
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 3 cut(s) 446, 461, 480
MluCI AATT 3 cut(s) 65, 426, 685
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 585
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
NcoI CCATGG 1 cut(s) 321
NdeII GATC 4 cut(s) 205, 238, 607, 744
NlaIII CATG 2 cut(s) 37, 325
NlaIV GGNNCC 1 cut(s) 746
NmuCI GTSAC 2 cut(s) 152, 257
PciSI GCTCTTC 2 cut(s) 532, 668
PfeI GAWTC 4 cut(s) 30, 58, 493, 501
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 301
Psp124BI GAGCTC 2 cut(s) 446, 461
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 746
PspPI GGNCC 2 cut(s) 301, 637
PspPPI RGGWCCY 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 744
RsaI GTAC 2 cut(s) 345, 400
RsaNI GTAC 2 cut(s) 344, 399
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 2 cut(s) 446, 461
SapI GCTCTTC 2 cut(s) 532, 668
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 4 cut(s) 205, 238, 607, 744
Sau96I GGNCC 2 cut(s) 301, 637
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 3 cut(s) 446, 461, 480
SfaNI GCATC 2 cut(s) 475, 765
SinI GGWCC 2 cut(s) 301, 637
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 216, 454
SmoI CTYRAG 2 cut(s) 216, 454
Sse9I AATT 3 cut(s) 65, 426, 685
SsiI CCGC 3 cut(s) 332, 488, 640
SspMI CTAG 2 cut(s) 15, 347
SstI GAGCTC 2 cut(s) 446, 461
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 293, 734
TaqI TCGA 3 cut(s) 474, 610, 658
TasI AATT 3 cut(s) 65, 426, 685
TfiI GAWTC 4 cut(s) 30, 58, 493, 501
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 3 cut(s) 525, 553, 573
TseFI GTSAC 2 cut(s) 152, 257
Tsp45I GTSAC 2 cut(s) 152, 257
TspDTI ATGAA 3 cut(s) 22, 117, 122
TspRI CASTG 3 cut(s) 525, 553, 573
VpaK11BI GGWCC 2 cut(s) 301, 637
XapI RAATTY 1 cut(s) 685
XspI CTAG 2 cut(s) 15, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.