Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

21673432 .. 21675803

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTATCAAGATTCTGGATTAATGCTCCGTTACATGCAAAACTGTCCCCCAGATATTCAACAATTCGAAGACCTCTTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATATCTGAGTATGATATTGGAGAAGAAAGTGATCTTTTTAGAGCTCCTGATCCAATTCTTGAAGAACCAATCTTAACCGTTGATCCACTCTCTGCTGCTTTGACTATGATCTCTTGTGGTGAAGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACAGCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTTATGATGAAATCAGCTATGGAGTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGAGAACCAGGATATGCAAAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACATGCACAACAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGAATGCGAAGAGCCTTTAGTGAAGGCGACATACAGAAACTTGGGGCAGGTCTTGTTCAATCTCCACTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATACAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGCTCTTGCAGATAGCCAACCGAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

264

Amino Acids

30.04

Weight (kDa)

4.83

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	139 - 181	4e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AclWI	GGATC	2 cut(s)	176, 209
AcsI	RAATTY	3 cut(s)	469, 523, 697
AcuI	CTGAAG	1 cut(s)	627
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	59, 79, 194, 608
AjnI	CCWGG	1 cut(s)	438
Alw21I	GWGCWC	2 cut(s)	178, 479
Alw26I	GTCTC	2 cut(s)	381, 500
AlwI	GGATC	2 cut(s)	176, 209
Ama87I	CYCGRG	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	227, 636
ApoI	RAATTY	3 cut(s)	469, 523, 697
AseI	ATTAAT	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	463
BanII	GRGCYC	2 cut(s)	178, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbsI	GAAGAC	2 cut(s)	75, 261
Bbv12I	GWGCWC	2 cut(s)	178, 479
BbvI	GCAGC	2 cut(s)	214, 623
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	381, 500
BfaI	CTAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	228, 637
BlsI	GCNGC	2 cut(s)	229, 638
Bme1390I	CCNGG	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	440
BpiI	GAAGAC	2 cut(s)	75, 261
Bpu14I	TTCGAA	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	760
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	214, 623
BsgI	GTGCAG	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	178, 479
BsiHKCI	CYCGRG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	381, 500
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	178, 479
Bsp143I	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
BspCNI	CTCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	2 cut(s)	176, 209
BspQI	GCTCTTC	2 cut(s)	553, 680
BspT104I	TTCGAA	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	44, 211, 511
Bst6I	CTCTTC	3 cut(s)	80, 553, 680
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	692, 724
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	7 cut(s)	166, 184, 217, 243, 289, 352, 652
BstMAI	GTCTC	2 cut(s)	381, 500
BstMBI	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	2 cut(s)	37, 497
BstSCI	CCNGG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	214, 623
BstV2I	GAAGAC	2 cut(s)	75, 261
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	692, 724
CviAII	CATG	2 cut(s)	34, 494
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	7 cut(s)	165, 183, 216, 242, 288, 351, 651
DpnII	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
Eam1104I	CTCTTC	3 cut(s)	80, 553, 680
EarI	CTCTTC	3 cut(s)	80, 553, 680
Ecl136II	GAGCTC	2 cut(s)	176, 477
Eco24I	GRGCYC	2 cut(s)	178, 479
Eco53kI	GAGCTC	2 cut(s)	176, 477
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	2 cut(s)	176, 477
EcoRII	CCWGG	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	178, 479
FaeI	CATG	2 cut(s)	37, 497
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	2 cut(s)	33, 493
Fnu4HI	GCNGC	2 cut(s)	228, 637
FriOI	GRGCYC	2 cut(s)	178, 479
Fsp4HI	GCNGC	2 cut(s)	228, 637
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	2 cut(s)	228, 637
Hin1II	CATG	2 cut(s)	37, 497
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HindIII	AAGCTT	2 cut(s)	327, 662
HinfI	GANTC	5 cut(s)	11, 122, 374, 517, 756
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	6 cut(s)	97, 139, 388, 522, 646, 761
Hpy188III	TCNNGA	9 cut(s)	8, 15, 179, 191, 284, 320, 403, 530, 669
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	566, 759
HpyCH4III	ACNGT	3 cut(s)	44, 211, 511
HpyCH4V	TGCA	7 cut(s)	37, 301, 448, 497, 639, 726, 740
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	37, 497
Kzo9I	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
LguI	GCTCTTC	2 cut(s)	553, 680
LmnI	GCTCC	2 cut(s)	30, 181
LpnPI	CCDG	9 cut(s)	63, 192, 297, 425, 452, 543, 582, 676, 712
Lsp1109I	GCAGC	2 cut(s)	214, 623
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	3 cut(s)	29, 418, 489
MalI	GATC	7 cut(s)	165, 183, 216, 242, 288, 351, 651
MboI	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
MboII	GAAGA	8 cut(s)	67, 80, 167, 206, 266, 570, 659, 697
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	178, 479
MluCI	AATT	5 cut(s)	62, 186, 469, 523, 697
MlyI	GAGTC	3 cut(s)	131, 383, 765
MnlI	CCTC	4 cut(s)	83, 755, 775, 780
MseI	TTAA	3 cut(s)	20, 206, 714
MspR9I	CCNGG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	440
NdeII	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
NlaIII	CATG	2 cut(s)	37, 497
NmuCI	GTSAC	2 cut(s)	418, 489
NspI	RCATGY	2 cut(s)	37, 497
NspV	TTCGAA	1 cut(s)	66
PciSI	GCTCTTC	2 cut(s)	553, 680
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	11, 517
PkrI	GCNGC	2 cut(s)	229, 638
PleI	GAGTC	3 cut(s)	130, 382, 764
PpsI	GAGTC	3 cut(s)	130, 382, 764
PshBI	ATTAAT	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	178, 479
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	349
SacI	GAGCTC	2 cut(s)	178, 479
SapI	GCTCTTC	2 cut(s)	553, 680
SaqAI	TTAA	3 cut(s)	20, 206, 714
SatI	GCNGC	2 cut(s)	228, 637
Sau3AI	GATC	7 cut(s)	163, 181, 214, 240, 286, 349, 649
SchI	GAGTC	3 cut(s)	131, 383, 765
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	2 cut(s)	178, 479
SfuI	TTCGAA	1 cut(s)	66
Sse9I	AATT	5 cut(s)	62, 186, 469, 523, 697
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	2 cut(s)	178, 479
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	44, 211, 511
TaqI	TCGA	3 cut(s)	66, 537, 670
TasI	AATT	5 cut(s)	62, 186, 469, 523, 697
TfiI	GAWTC	2 cut(s)	11, 517
Tru1I	TTAA	3 cut(s)	20, 206, 714
Tru9I	TTAA	3 cut(s)	20, 206, 714
TseFI	GTSAC	2 cut(s)	418, 489
TseI	GCWGC	2 cut(s)	227, 636
Tsp45I	GTSAC	2 cut(s)	418, 489
TspDTI	ATGAA	5 cut(s)	114, 119, 285, 351, 374
TspGWI	ACGGA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	20
XapI	RAATTY	3 cut(s)	469, 523, 697
XceI	RCATGY	2 cut(s)	37, 497
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.