Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

52754287 .. 52758384

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG404700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATGCAGAGACTGGTCTTTTGTTCCCCTATTTCCAGAATACCCCTCAAGACTTTCAGCAGTTGGAGGAGTTCTGCAGAAACCAGAAATTCAATGCTTCAATGAATAACCTTGTTGAGGCCTCCATGATATCAGAATACGACCTGGGAGGAGATTGGGATCTATTTAAAGCTCCAGAGCCTATCATCGAAGAACCAGTTCTTGGCCTTGATCCCATGACAGCAGCCTCAATGATGTCTTGTGGGGAAGATGTCATCTCGTCTCAAGGACTCAAGGCTTCAGACATTGAATCACTTCAAAGTGAACAGCTATTGGATGATGTCTTCTATGACAAGGATATCCTAGAAAAGGATCCAACAGAAACACCACTTTCAGAGGTCCTTGATATCAAAATTCCTGATTTGGGGACAGATGGAAATCAAATTCAAGAAGACAAACCACTTCGTGACATACAATTCCAGAAAAGTGTCAGCTCAGGATGTCTAAGCTCAACGGAGTGGATGCAAGGAGCTGCAACGAAGCCTAATTTTATGGAATTACCTGGAATGGATTTTGCTGCTGCTTATGGGATTCGGAGGGCATTTAGTGAAGGAGATATTAAGGTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

203

Amino Acids

22.68

Weight (kDa)

4.08

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AclWI	GGATC	4 cut(s)	168, 206, 347, 360
AcsI	RAATTY	3 cut(s)	89, 393, 423
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	118, 203, 349, 404
AgsI	TTSAA	5 cut(s)	94, 102, 290, 299, 428
AjnI	CCWGG	2 cut(s)	144, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	5 cut(s)	173, 310, 474, 489, 512
AluI	AGCT	5 cut(s)	173, 310, 474, 489, 512
Alw26I	GTCTC	2 cut(s)	5, 267
AlwI	GGATC	4 cut(s)	168, 206, 347, 360
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	120, 205
ApeKI	GCWGC	4 cut(s)	224, 512, 557, 560
ApoI	RAATTY	3 cut(s)	89, 393, 423
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	2 cut(s)	198, 294
AspS9I	GGNCC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	352
BbsI	GAAGAC	2 cut(s)	316, 438
BbvI	GCAGC	4 cut(s)	236, 499, 544, 547
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	146, 543
BcoDI	GTCTC	2 cut(s)	5, 267
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	4 cut(s)	225, 513, 558, 561
BlsI	GCNGC	4 cut(s)	226, 514, 559, 562
Bme1390I	CCNGG	2 cut(s)	146, 543
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	146, 543
BmsI	GCATC	1 cut(s)	492
BpiI	GAAGAC	2 cut(s)	316, 438
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	3 cut(s)	33, 249, 257
BsaBI	GATNNNNATC	2 cut(s)	159, 417
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 203, 349, 404
Bse1I	ACTGG	2 cut(s)	19, 197
Bse8I	GATNNNNATC	2 cut(s)	159, 417
BseBI	CCWGG	2 cut(s)	146, 543
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	3 cut(s)	322, 485, 507
BseJI	GATNNNNATC	2 cut(s)	159, 417
BseLI	CCNNNNNNNGG	4 cut(s)	118, 203, 349, 404
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	19, 197
BseRI	GAGGAG	2 cut(s)	83, 165
BseXI	GCAGC	4 cut(s)	236, 499, 544, 547
BshFI	GGCC	2 cut(s)	122, 207
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	4 cut(s)	118, 203, 349, 404
BsmAI	GTCTC	2 cut(s)	5, 267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	122, 207
Bsp143I	GATC	3 cut(s)	160, 211, 352
BspANI	GGCC	2 cut(s)	122, 207
BspCNI	CTCAG	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	4 cut(s)	168, 206, 347, 360
BsrI	ACTGG	2 cut(s)	19, 197
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	160, 211, 352
Bst2UI	CCWGG	2 cut(s)	146, 543
BstDEI	CTNAG	2 cut(s)	475, 485
BstENI	CCTNNNNNAGG	2 cut(s)	116, 347
BstF5I	GGATG	3 cut(s)	322, 485, 507
BstKTI	GATC	3 cut(s)	163, 214, 355
BstMAI	GTCTC	2 cut(s)	5, 267
BstMBI	GATC	3 cut(s)	160, 211, 352
BstNI	CCWGG	2 cut(s)	146, 543
BstSCI	CCNGG	2 cut(s)	144, 541
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	236, 499, 544, 547
BstV2I	GAAGAC	2 cut(s)	316, 438
BstX2I	RGATCY	2 cut(s)	160, 352
BstYI	RGATCY	2 cut(s)	160, 352
BsuRI	GGCC	2 cut(s)	122, 207
BtsCI	GGATG	3 cut(s)	322, 485, 507
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	379
CviAII	CATG	2 cut(s)	127, 217
DdeI	CTNAG	2 cut(s)	475, 485
DpnI	GATC	3 cut(s)	162, 213, 354
DpnII	GATC	3 cut(s)	160, 211, 352
DraI	TTTAAA	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	446
Eco147I	AGGCCT	1 cut(s)	122
Eco32I	GATATC	3 cut(s)	132, 340, 388
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	2 cut(s)	116, 347
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	144, 541
EcoRV	GATATC	3 cut(s)	132, 340, 388
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	130, 220
FaiI	YATR	7 cut(s)	6, 128, 218, 330, 452, 533, 567
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	2 cut(s)	126, 216
Fnu4HI	GCNGC	4 cut(s)	225, 513, 558, 561
FokI	GGATG	3 cut(s)	329, 492, 514
Fsp4HI	GCNGC	4 cut(s)	225, 513, 558, 561
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	4 cut(s)	225, 513, 558, 561
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	122, 207
Hin1II	CATG	2 cut(s)	130, 220
HinfI	GANTC	3 cut(s)	270, 290, 571
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	5 cut(s)	136, 283, 376, 576, 608
Hpy188III	TCNNGA	8 cut(s)	37, 50, 176, 398, 428, 446, 460, 477
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	584
HpyCH4V	TGCA	4 cut(s)	8, 78, 505, 515
HpyF3I	CTNAG	2 cut(s)	475, 485
Hsp92II	CATG	2 cut(s)	130, 220
Kzo9I	GATC	3 cut(s)	160, 211, 352
LmnI	GCTCC	2 cut(s)	178, 509
Lsp1109I	GCAGC	4 cut(s)	236, 499, 544, 547
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	162, 213, 354
MboI	GATC	3 cut(s)	160, 211, 352
MboII	GAAGA	4 cut(s)	203, 260, 316, 443
MflI	RGATCY	2 cut(s)	160, 352
MluCI	AATT	6 cut(s)	89, 393, 423, 455, 526, 536
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	45, 380
MnlI	CCTC	8 cut(s)	57, 61, 112, 133, 143, 238, 370, 570
MroXI	GAANNNNTTC	2 cut(s)	198, 294
MseI	TTAA	2 cut(s)	168, 600
MspR9I	CCNGG	2 cut(s)	146, 543
MvaI	CCWGG	2 cut(s)	146, 543
NdeII	GATC	3 cut(s)	160, 211, 352
NlaIII	CATG	2 cut(s)	130, 220
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	122
PdmI	GAANNNNTTC	2 cut(s)	198, 294
PfeI	GAWTC	2 cut(s)	290, 571
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	226, 514, 559, 562
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	144, 541
PspGI	CCWGG	2 cut(s)	144, 541
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	2 cut(s)	160, 352
SaqAI	TTAA	2 cut(s)	168, 600
SatI	GCNGC	4 cut(s)	225, 513, 558, 561
Sau3AI	GATC	3 cut(s)	160, 211, 352
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	146, 543
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	379
SmlI	CTYRAG	3 cut(s)	48, 264, 272
SmoI	CTYRAG	3 cut(s)	48, 264, 272
Sse9I	AATT	6 cut(s)	89, 393, 423, 455, 526, 536
SseBI	AGGCCT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	144, 541
TaqI	TCGA	1 cut(s)	189
TasI	AATT	6 cut(s)	89, 393, 423, 455, 526, 536
TfiI	GAWTC	2 cut(s)	290, 571
Tru1I	TTAA	2 cut(s)	168, 600
Tru9I	TTAA	2 cut(s)	168, 600
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	4 cut(s)	224, 512, 557, 560
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	509
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	379
XagI	CCTNNNNNAGG	2 cut(s)	116, 347
XapI	RAATTY	3 cut(s)	89, 393, 423
XmnI	GAANNNNTTC	2 cut(s)	198, 294
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.