Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

67925593 .. 67929678

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCAGAATAACCTTGTTGAGGCCTCCATGATATCAGAATACGACCTGGGAGGAGATTGGGATCTATTTAAAGCTCCAGAGCCTATCATCGAAGAACCAGTTCTTGGCCTTGATCCCATGACAGCAGCCTCAATGATGTCTTGTGGGGAAGATGTCATCTCGTCTCAAGGACTCAAGGCTTCAGACATTGAATCACTTCAAAGTGAACAGCTATTGGATGATGTCTTCTATGACAAGGATATCCTAGAAAAGGATCCAACAGAAACACCACTTTCAGAGGTCCTTGATATCAAAATTCCTGATTTGGGGACAGATGGAAATCAAATTCAAGAAGACAAACCACTTCGTGACATACAATTCCAGAAAAGTGTCAGCTCAGGATGTCTAAGCTCAACGGAGTGGATGCAAGGAGCTGCAACGAAGCCTAATTTTATGGAATTACCTGGAATGGATTTTGCTGCTGCTTATGGGATTCGGAGGGCATTTAGTGAAGGAGATATTAAGACTCTCGGTAGCGGTAACATAAGCCTCGTCCATCCTCCTCTTGAGCGGTCGATTATCATCACCAACTGCACCACTGAGGAACGCAGGGAAAAGCTTTCAAGATATAGGAACAAGAAGACAAAGAGGAACTTCGGCAGGAAAATCAAGGTAAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

220

Amino Acids

24.5

Weight (kDa)

4.71

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	550
AciI	CCGC	2 cut(s)	516, 550
AclWI	GGATC	4 cut(s)	69, 107, 248, 261
AcsI	RAATTY	2 cut(s)	294, 324
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	4 cut(s)	19, 104, 250, 305
AgsI	TTSAA	4 cut(s)	191, 200, 329, 603
AjnI	CCWGG	2 cut(s)	45, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	6 cut(s)	74, 211, 375, 390, 413, 598
AluI	AGCT	6 cut(s)	74, 211, 375, 390, 413, 598
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	69, 107, 248, 261
AoxI	GGCC	2 cut(s)	21, 106
ApeKI	GCWGC	4 cut(s)	125, 413, 458, 461
ApoI	RAATTY	2 cut(s)	294, 324
Asp700I	GAANNNNTTC	2 cut(s)	99, 195
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	253
BbsI	GAAGAC	3 cut(s)	217, 339, 626
BbvI	GCAGC	4 cut(s)	137, 400, 445, 448
BccI	CCATC	2 cut(s)	308, 543
BciT130I	CCWGG	2 cut(s)	47, 444
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	126, 414, 459, 462
BlsI	GCNGC	4 cut(s)	127, 415, 460, 463
Bme1390I	CCNGG	2 cut(s)	47, 444
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	47, 444
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	3 cut(s)	217, 339, 626
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	376
BpuEI	CTTGAG	3 cut(s)	150, 158, 566
BsaBI	GATNNNNATC	3 cut(s)	60, 318, 560
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 104, 250, 305
Bse1I	ACTGG	1 cut(s)	98
Bse8I	GATNNNNATC	3 cut(s)	60, 318, 560
BseBI	CCWGG	2 cut(s)	47, 444
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	4 cut(s)	223, 386, 408, 535
BseJI	GATNNNNATC	3 cut(s)	60, 318, 560
BseLI	CCNNNNNNNGG	4 cut(s)	19, 104, 250, 305
BseMII	CTCAG	2 cut(s)	390, 570
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	66, 531
BseXI	GCAGC	4 cut(s)	137, 400, 445, 448
BsgI	GTGCAG	1 cut(s)	556
Bsh1285I	CGRYCG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	23, 108
BsiEI	CGRYCG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	19, 104, 250, 305
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	23, 108
Bsp143I	GATC	3 cut(s)	61, 112, 253
BspACI	CCGC	2 cut(s)	516, 550
BspANI	GGCC	2 cut(s)	23, 108
BspCNI	CTCAG	2 cut(s)	389, 571
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	4 cut(s)	69, 107, 248, 261
BsrBI	CCGCTC	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	61, 112, 253
Bst2UI	CCWGG	2 cut(s)	47, 444
BstDEI	CTNAG	3 cut(s)	376, 386, 579
BstENI	CCTNNNNNAGG	2 cut(s)	17, 248
BstF5I	GGATG	4 cut(s)	223, 386, 408, 535
BstKTI	GATC	3 cut(s)	64, 115, 256
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	61, 112, 253
BstMCI	CGRYCG	1 cut(s)	554
BstNI	CCWGG	2 cut(s)	47, 444
BstSCI	CCNGG	2 cut(s)	45, 442
BstV1I	GCAGC	4 cut(s)	137, 400, 445, 448
BstV2I	GAAGAC	3 cut(s)	217, 339, 626
BstX2I	RGATCY	2 cut(s)	61, 253
BstYI	RGATCY	2 cut(s)	61, 253
BsuRI	GGCC	2 cut(s)	23, 108
BtsCI	GGATG	4 cut(s)	223, 386, 408, 535
BtsIMutI	CAGTG	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	2 cut(s)	28, 118
DdeI	CTNAG	3 cut(s)	376, 386, 579
DpnI	GATC	3 cut(s)	63, 114, 255
DpnII	GATC	3 cut(s)	61, 112, 253
DraI	TTTAAA	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	23
Eco32I	GATATC	3 cut(s)	33, 241, 289
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	2 cut(s)	17, 248
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	45, 442
EcoRV	GATATC	3 cut(s)	33, 241, 289
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	31, 121
FaiI	YATR	8 cut(s)	29, 119, 231, 353, 434, 468, 524, 609
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	27, 117
Fnu4HI	GCNGC	4 cut(s)	126, 414, 459, 462
FokI	GGATG	4 cut(s)	230, 393, 415, 522
Fsp4HI	GCNGC	4 cut(s)	126, 414, 459, 462
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	4 cut(s)	126, 414, 459, 462
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	23, 108
Hin1II	CATG	2 cut(s)	31, 121
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	171, 191, 472, 505
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	4 cut(s)	37, 184, 277, 477
Hpy188III	TCNNGA	9 cut(s)	77, 299, 329, 347, 361, 378, 545, 603, 660
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	485
HpyCH4V	TGCA	4 cut(s)	4, 406, 416, 573
HpyF3I	CTNAG	3 cut(s)	376, 386, 579
Hsp92II	CATG	2 cut(s)	31, 121
Kzo9I	GATC	3 cut(s)	61, 112, 253
LmnI	GCTCC	2 cut(s)	79, 410
Lsp1109I	GCAGC	4 cut(s)	137, 400, 445, 448
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	347, 518
MalI	GATC	3 cut(s)	63, 114, 255
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	3 cut(s)	61, 112, 253
MboII	GAAGA	5 cut(s)	104, 161, 217, 344, 631
MflI	RGATCY	2 cut(s)	61, 253
MluCI	AATT	5 cut(s)	294, 324, 356, 427, 437
MlyI	GAGTC	2 cut(s)	165, 499
MmeI	TCCRAC	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	99, 195
MseI	TTAA	2 cut(s)	69, 501
MspR9I	CCNGG	2 cut(s)	47, 444
MvaI	CCWGG	2 cut(s)	47, 444
NdeII	GATC	3 cut(s)	61, 112, 253
NlaIII	CATG	2 cut(s)	31, 121
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	23
PdmI	GAANNNNTTC	2 cut(s)	99, 195
PfeI	GAWTC	2 cut(s)	191, 472
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	127, 415, 460, 463
PleI	GAGTC	2 cut(s)	165, 499
PpsI	GAGTC	2 cut(s)	165, 499
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	45, 442
PspGI	CCWGG	2 cut(s)	45, 442
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	61, 253
SaqAI	TTAA	2 cut(s)	69, 501
SatI	GCNGC	4 cut(s)	126, 414, 459, 462
Sau3AI	GATC	3 cut(s)	61, 112, 253
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	165, 499
ScrFI	CCNGG	2 cut(s)	47, 444
SfaNI	GCATC	1 cut(s)	393
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	3 cut(s)	165, 173, 545
SmoI	CTYRAG	3 cut(s)	165, 173, 545
Sse9I	AATT	5 cut(s)	294, 324, 356, 427, 437
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	516, 550
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	45, 442
TaqI	TCGA	2 cut(s)	90, 554
TasI	AATT	5 cut(s)	294, 324, 356, 427, 437
TfiI	GAWTC	2 cut(s)	191, 472
Tru1I	TTAA	2 cut(s)	69, 501
Tru9I	TTAA	2 cut(s)	69, 501
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	4 cut(s)	125, 413, 458, 461
Tsp45I	GTSAC	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	2 cut(s)	17, 248
XapI	RAATTY	2 cut(s)	294, 324
XmnI	GAANNNNTTC	2 cut(s)	99, 195
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.