Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

52593135 .. 52595438

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAGCAAATTAGTCATGTCTAGTAGTAATATTAAACAACCATTAAGGTTGTTGATGGTAGAAGTAGGGATGTTGGCAATGGCAACACTAGTAAGCTCTGCGGTTCAACATAACTACGCGGATGCTTTCTCAAAGAGCATTTTGTTTTTTGAAGGGCAGAGATCGGGGAGGTTGCCGCATACACAACGAATGACATGGAGGAAAGATTCTGCTCTACGTGATGGCCTAGATGTTAAAAATTCGGAAAATCAATGGGCTCAGAACTTCCACATGCCTTGGAACTTGGAAGCCATTAGATGGGCGACTGATTATTTGCTTAAATCCACTACTAGTGCTAGTGGTTCTGTTGTTGGTGTAGTCGGTGACCCCAATGGTGACCACACTTGTTGGGAAAGGCCTGAAAACATGGACACTCCTCGAACATCTTACATAGTAACCACACAAAAGCTAGGTTCTGAAGTTTCAGCCGAGATTGCAGCCGCACTTGCAGCTTCTTCCATGGTGTTTAGTGGTTCTGACAAAGGATATTCTACCTTGCTTCTTACCCGAGCAAGACAGGATGAATTGATTTGGGGAGCAGCATGGTTATACAAGGCAACAAGGAGTCCTCATTATTGGAACTATGTAAAACAGAACATAGATGCCATGAATTTGGAGTCCAATGTAGTCCTAAGAAATGTGGAAGGCCAAGTAGTTGCATACAATGGCGGAGATGTCACCGAATTTGGGTGGGATGCAAAGCATGCTGGCATTAACATCCTTGTTTCTCAATGGATGATGACTAACCCCGTCAAGGCCAATCCCTTCATTCCCAAAGCGGATGGGCTTGTTTGCTCCATTGTGCCCGAATCACCTGCTCCCAAATCAGTCACACTCACAAGGTGGGCTCTTGTTCAAACCTGGAGCCCTGGAGGAAGTAACATGCAACATACAACCGCTTTATCTTTTCTTCTAGTAGTTTATGCTGGCTATATGAAAGCTGCAAGAAAAGTTGTAAATTGTGGGAACAATGTTGTTGTCACTCCAGCTAGGCTGGTTGATTATATACTGGGAAGCAATCCTAATAGCATGTCATACATGGTGGGATATGGTACAAGATTTCCCCAGAAGATACCTCACCGCGGATCGGTGATACCTTCGATTGATCAACACCCCAAACACATGCAGTGCATGAAGAAATACGTCTCCAAAGCTCAGGCTCCGAATCCAAACATGCTGATAGGTGCAATCGTTGGAGGACCAGCTCTGGATGATACATTAAGATTCTCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

424

Amino Acids

46.72

Weight (kDa)

9.26

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	39 - 78	2e-09	Glycosyl hydrolase family 9
Glyco_hydro_9	PF00759	93 - 186	1.8e-27	Glycosyl hydrolase family 9
Glyco_hydro_9	PF00759	186 - 418	1.2e-39	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	862
Acc36I	ACCTGC	1 cut(s)	862
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccII	CGCG	2 cut(s)	119, 1122
AciI	CCGC	9 cut(s)	101, 119, 176, 480, 708, 818, 936, 1120, 1122
AclWI	GGATC	1 cut(s)	1132
AcsI	RAATTY	3 cut(s)	238, 649, 722
AcuI	CTGAAG	1 cut(s)	477
AdeI	CACNNNGTG	1 cut(s)	882
AfaI	GTAC	1 cut(s)	1093
AfiI	CCNNNNNNNGG	5 cut(s)	297, 726, 793, 1121, 1126
AgsI	TTSAA	3 cut(s)	107, 152, 896
AhlI	ACTAGT	2 cut(s)	88, 329
AjnI	CCWGG	2 cut(s)	899, 907
AluBI	AGCT	7 cut(s)	96, 448, 491, 980, 1028, 1193, 1244
AluI	AGCT	7 cut(s)	96, 448, 491, 980, 1028, 1193, 1244
Alw26I	GTCTC	1 cut(s)	1189
AlwI	GGATC	1 cut(s)	1132
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	4 cut(s)	223, 395, 685, 795
ApeKI	GCWGC	4 cut(s)	476, 488, 578, 980
ApoI	RAATTY	3 cut(s)	238, 649, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AspS9I	GGNCC	1 cut(s)	1238
AsuHPI	GGTGA	6 cut(s)	374, 386, 709, 843, 1109, 1141
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	1238
BaeGI	GKGCMC	1 cut(s)	846
BanII	GRGCYC	3 cut(s)	259, 889, 908
BbvI	GCAGC	4 cut(s)	488, 500, 590, 967
BccI	CCATC	4 cut(s)	49, 215, 291, 815
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BciT130I	CCWGG	2 cut(s)	901, 909
BclI	TGATCA	1 cut(s)	1144
BcoDI	GTCTC	1 cut(s)	1189
BcuI	ACTAGT	2 cut(s)	88, 329
BfaI	CTAG	8 cut(s)	21, 89, 227, 330, 336, 449, 953, 1029
BfuAI	ACCTGC	1 cut(s)	862
BisI	GCNGC	6 cut(s)	176, 477, 480, 489, 579, 981
BlsI	GCNGC	6 cut(s)	177, 478, 481, 490, 580, 982
Bme1390I	CCNGG	2 cut(s)	901, 909
Bme18I	GGWCC	1 cut(s)	1238
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	1238
BmiI	GGNNCC	2 cut(s)	905, 1200
BmrFI	CCNGG	2 cut(s)	901, 909
BmrI	ACTGGG	1 cut(s)	1058
BmsI	GCATC	3 cut(s)	112, 631, 724
BmuI	ACTGGG	1 cut(s)	1058
BpmI	CTGGAG	3 cut(s)	922, 930, 1008
Bpu10I	CCTNAGC	1 cut(s)	1194
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	275, 498, 907, 1120
Bsc4I	CCNNNNNNNGG	5 cut(s)	297, 726, 793, 1121, 1126
Bse1I	ACTGG	1 cut(s)	1053
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	901, 909
BseDI	CCNNGG	4 cut(s)	275, 498, 907, 1120
BseGI	GGATG	8 cut(s)	75, 127, 565, 739, 756, 780, 826, 1255
BseLI	CCNNNNNNNGG	5 cut(s)	297, 726, 793, 1121, 1126
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	272, 1208
BseNI	ACTGG	1 cut(s)	1053
BseRI	GAGGAG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	4 cut(s)	488, 500, 590, 967
Bsh1236I	CGCG	2 cut(s)	119, 1122
BshFI	GGCC	4 cut(s)	225, 397, 687, 797
BsiHKCI	CYCGRG	1 cut(s)	546
BslI	CCNNNNNNNGG	5 cut(s)	297, 726, 793, 1121, 1126
BsmAI	GTCTC	1 cut(s)	1189
BsmBI	CGTCTC	1 cut(s)	1189
BsnI	GGCC	4 cut(s)	225, 397, 687, 797
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	4 cut(s)	259, 846, 889, 908
Bsp143I	GATC	3 cut(s)	161, 1124, 1144
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	9 cut(s)	101, 119, 176, 480, 708, 818, 936, 1120, 1122
BspANI	GGCC	4 cut(s)	225, 397, 687, 797
BspCNI	CTCAG	2 cut(s)	271, 1207
BspFNI	CGCG	2 cut(s)	119, 1122
BspLI	GGNNCC	2 cut(s)	905, 1200
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	1 cut(s)	1132
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	1053
BssECI	CCNNGG	4 cut(s)	275, 498, 907, 1120
BssMI	GATC	3 cut(s)	161, 1124, 1144
BssT1I	CCWWGG	2 cut(s)	275, 498
Bst2UI	CCWGG	2 cut(s)	901, 909
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	744, 748, 967
BstDEI	CTNAG	3 cut(s)	258, 671, 1194
BstDSI	CCRYGG	2 cut(s)	498, 1120
BstEII	GGTNACC	2 cut(s)	362, 374
BstF5I	GGATG	8 cut(s)	75, 127, 565, 739, 756, 780, 826, 1255
BstFNI	CGCG	2 cut(s)	119, 1122
BstKTI	GATC	3 cut(s)	164, 1127, 1147
BstMAI	GTCTC	1 cut(s)	1189
BstMBI	GATC	3 cut(s)	161, 1124, 1144
BstMWI	GCNNNNNNNGC	4 cut(s)	473, 485, 488, 743
BstNI	CCWGG	2 cut(s)	901, 909
BstNSI	RCATGY	6 cut(s)	274, 746, 925, 1072, 1165, 1216
BstPI	GGTNACC	2 cut(s)	362, 374
BstSCI	CCNGG	2 cut(s)	899, 907
BstSLI	GKGCMC	1 cut(s)	846
BstUI	CGCG	2 cut(s)	119, 1122
BstV1I	GCAGC	4 cut(s)	488, 500, 590, 967
BstXI	CCANNNNNNTGG	1 cut(s)	652
BsuRI	GGCC	4 cut(s)	225, 397, 687, 797
BtgI	CCRYGG	2 cut(s)	498, 1120
BtsCI	GGATG	8 cut(s)	75, 127, 565, 739, 756, 780, 826, 1255
BtsI	GCAGTG	1 cut(s)	1172
BtsIMutI	CAGTG	1 cut(s)	1172
BveI	ACCTGC	1 cut(s)	862
Cac8I	GCNNGC	3 cut(s)	744, 748, 967
Cfr13I	GGNCC	1 cut(s)	1238
Cfr42I	CCGCGG	1 cut(s)	1123
Csp6I	GTAC	1 cut(s)	1092
CspCI	CAANNNNNGTGG	4 cut(s)	257, 292, 368, 403
CviQI	GTAC	1 cut(s)	1092
DdeI	CTNAG	3 cut(s)	258, 671, 1194
DpnI	GATC	3 cut(s)	163, 1126, 1146
DpnII	GATC	3 cut(s)	161, 1124, 1144
DraIII	CACNNNGTG	1 cut(s)	882
EciI	GGCGGA	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	275, 498
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	3 cut(s)	259, 889, 908
Eco47I	GGWCC	1 cut(s)	1238
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	546
Eco91I	GGTNACC	2 cut(s)	362, 374
EcoO65I	GGTNACC	2 cut(s)	362, 374
EcoRII	CCWGG	2 cut(s)	899, 907
EcoT14I	CCWWGG	2 cut(s)	275, 498
EcoT38I	GRGCYC	3 cut(s)	259, 889, 908
ErhI	CCWWGG	2 cut(s)	275, 498
Esp3I	CGTCTC	1 cut(s)	1189
FbaI	TGATCA	1 cut(s)	1144
Fnu4HI	GCNGC	6 cut(s)	176, 477, 480, 489, 579, 981
FokI	GGATG	8 cut(s)	82, 134, 572, 743, 746, 787, 833, 1262
FriOI	GRGCYC	3 cut(s)	259, 889, 908
Fsp4HI	GCNGC	6 cut(s)	176, 477, 480, 489, 579, 981
FspBI	CTAG	8 cut(s)	21, 89, 227, 330, 336, 449, 953, 1029
GluI	GCNGC	6 cut(s)	176, 477, 480, 489, 579, 981
GsuI	CTGGAG	3 cut(s)	922, 930, 1008
HaeIII	GGCC	4 cut(s)	225, 397, 687, 797
HinfI	GANTC	6 cut(s)	206, 604, 656, 848, 1204, 1263
HphI	GGTGA	6 cut(s)	374, 386, 709, 843, 1109, 1141
Hpy188I	TCNGA	5 cut(s)	244, 261, 457, 517, 1203
Hpy188III	TCNNGA	2 cut(s)	1247, 1267
HpyAV	CCTTC	4 cut(s)	146, 677, 814, 1146
HpyCH4IV	ACGT	2 cut(s)	217, 1182
HpyCH4V	TGCA	9 cut(s)	476, 488, 698, 737, 925, 983, 1165, 1170, 1226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	473, 485, 488, 743
HpyF3I	CTNAG	3 cut(s)	258, 671, 1194
HpySE526I	ACGT	2 cut(s)	217, 1182
Ksp22I	TGATCA	1 cut(s)	1144
KspI	CCGCGG	1 cut(s)	1123
Kzo9I	GATC	3 cut(s)	161, 1124, 1144
LmnI	GCTCC	5 cut(s)	575, 839, 862, 903, 1204
Lsp1109I	GCAGC	4 cut(s)	488, 500, 590, 967
LweI	GCATC	3 cut(s)	112, 631, 724
MaeI	CTAG	8 cut(s)	21, 89, 227, 330, 336, 449, 953, 1029
MaeII	ACGT	2 cut(s)	217, 1182
MaeIII	GTNAC	7 cut(s)	362, 374, 433, 715, 868, 917, 1018
MalI	GATC	3 cut(s)	163, 1126, 1146
MboI	GATC	3 cut(s)	161, 1124, 1144
MboII	GAAGA	4 cut(s)	486, 941, 1120, 1186
MhlI	GDGCHC	4 cut(s)	259, 846, 889, 908
MluCI	AATT	6 cut(s)	8, 238, 563, 649, 722, 997
MlyI	GAGTC	2 cut(s)	613, 665
MmeI	TCCRAC	1 cut(s)	1213
MnlI	CCTC	7 cut(s)	162, 192, 426, 618, 905, 1125, 1229
MseI	TTAA	6 cut(s)	33, 44, 234, 318, 753, 1259
MspA1I	CMGCKG	1 cut(s)	1122
MspR9I	CCNGG	2 cut(s)	901, 909
MvaI	CCWGG	2 cut(s)	901, 909
MvnI	CGCG	2 cut(s)	119, 1122
MwoI	GCNNNNNNNGC	4 cut(s)	473, 485, 488, 743
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	161, 1124, 1144
NlaIV	GGNNCC	2 cut(s)	905, 1200
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	5 cut(s)	362, 374, 715, 868, 1018
NspI	RCATGY	6 cut(s)	274, 746, 925, 1072, 1165, 1216
PaeI	GCATGC	1 cut(s)	746
PaqCI	CACCTGC	1 cut(s)	862
PceI	AGGCCT	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	206, 848, 1204, 1263
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	6 cut(s)	177, 478, 481, 490, 580, 982
PleI	GAGTC	2 cut(s)	612, 664
PpsI	GAGTC	2 cut(s)	612, 664
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	899, 907
PspEI	GGTNACC	2 cut(s)	362, 374
PspGI	CCWGG	2 cut(s)	899, 907
PspN4I	GGNNCC	2 cut(s)	905, 1200
PspPI	GGNCC	1 cut(s)	1238
RsaI	GTAC	1 cut(s)	1093
RsaNI	GTAC	1 cut(s)	1092
SacII	CCGCGG	1 cut(s)	1123
SaqAI	TTAA	6 cut(s)	33, 44, 234, 318, 753, 1259
SatI	GCNGC	6 cut(s)	176, 477, 480, 489, 579, 981
Sau3AI	GATC	3 cut(s)	161, 1124, 1144
Sau96I	GGNCC	1 cut(s)	1238
SchI	GAGTC	2 cut(s)	613, 665
ScrFI	CCNGG	2 cut(s)	901, 909
SduI	GDGCHC	4 cut(s)	259, 846, 889, 908
SfaNI	GCATC	3 cut(s)	112, 631, 724
Sfr303I	CCGCGG	1 cut(s)	1123
SgrBI	CCGCGG	1 cut(s)	1123
SinI	GGWCC	1 cut(s)	1238
SpeI	ACTAGT	2 cut(s)	88, 329
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	6 cut(s)	8, 238, 563, 649, 722, 997
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	9 cut(s)	101, 119, 176, 480, 708, 818, 936, 1120, 1122
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	8 cut(s)	21, 89, 227, 330, 336, 449, 953, 1029
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	899, 907
StyI	CCWWGG	2 cut(s)	275, 498
TaiI	ACGT	2 cut(s)	220, 1185
TaqI	TCGA	3 cut(s)	418, 1139, 1268
TasI	AATT	6 cut(s)	8, 238, 563, 649, 722, 997
TauI	GCSGC	2 cut(s)	178, 482
TfiI	GAWTC	4 cut(s)	206, 848, 1204, 1263
Tru1I	TTAA	6 cut(s)	33, 44, 234, 318, 753, 1259
Tru9I	TTAA	6 cut(s)	33, 44, 234, 318, 753, 1259
TscAI	CASTG	1 cut(s)	1172
TseFI	GTSAC	5 cut(s)	362, 374, 715, 868, 1018
TseI	GCWGC	4 cut(s)	476, 488, 578, 980
Tsp45I	GTSAC	5 cut(s)	362, 374, 715, 868, 1018
TspDTI	ATGAA	5 cut(s)	576, 662, 796, 989, 1187
TspRI	CASTG	1 cut(s)	1172
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	1238
XapI	RAATTY	3 cut(s)	238, 649, 722
XceI	RCATGY	6 cut(s)	274, 746, 925, 1072, 1165, 1216
XspI	CTAG	8 cut(s)	21, 89, 227, 330, 336, 449, 953, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.