Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

22886993 .. 22891080

Gene Structure 4088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31700.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTATGCAGAGACTGGGCTCTTGTTCCCTTATTTCCAGAACACCCCTCAAGACTTTCAGCAGTTGGAGGAGTTCTGTAGAAACCAGAAGTTCAATGTTTCAATGAATAACCTTGTTGAGGCCTCCATGATATCAGAGTACGACCTGGGAGAGGATTGGGATCTTTTTAAAGCTCCGGAGCCTATCATTGAAGAACCAGTTCTTGGCCTTGATATCATGACAGCCACATCAATGATGTCTTGTGGGGAAGATGTCATCTCCTCTCAAGGACTCAAGGCTGCAGACATTGAATCACTTCAAAGTGAACAGCTATTGGATGATGTTTTCTATGACAAGGATATCCTAGAAAAGGATCCAACAGAAACACCACTTTCTGAGGTTCTTGATATCAAAATTCCTGATTTGGGAACAGATGGAAATCAAGTTCAAGAAGACAAACCACTTCGTGACATACAATTCCAGAAAAGTGGCAGCTCAGGTTGTCTAAGCTCAATGGAGTGGATGCAAGGAGCTTCAACGAAGCCTAATTTTATGGATTTACCTGGAATGGATCTTGCTGCTGCGTATAGGATTCGGAGGGCATTTAGTGAAGGAGATATTAAGACATGTCTGGCCATTTTCACAGGATGGGGCTGGGTCATTGATACTGAGTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

220

Amino Acids

24.65

Weight (kDa)

4.05

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	187 - 229	8.9e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	175
AclWI	GGATC	4 cut(s)	168, 347, 360, 558
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	5 cut(s)	118, 151, 203, 349, 404
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	7 cut(s)	94, 102, 191, 290, 299, 428, 516
AjnI	CCWGG	2 cut(s)	144, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	5 cut(s)	173, 310, 474, 489, 512
AluI	AGCT	5 cut(s)	173, 310, 474, 489, 512
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	4 cut(s)	168, 347, 360, 558
AlwNI	CAGNNNCTG	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	120, 205, 612
ApeKI	GCWGC	4 cut(s)	278, 471, 557, 560
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	2 cut(s)	198, 294
BalI	TGGCCA	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	265, 483, 544, 547
BccI	CCATC	2 cut(s)	407, 621
BciT130I	CCWGG	2 cut(s)	146, 543
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	2 cut(s)	76, 279
BisI	GCNGC	4 cut(s)	279, 472, 558, 561
BlsI	GCNGC	4 cut(s)	280, 473, 559, 562
Bme1390I	CCNGG	2 cut(s)	146, 543
BmiI	GGNNCC	2 cut(s)	180, 354
BmrFI	CCNGG	2 cut(s)	146, 543
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	3 cut(s)	33, 249, 257
BsaBI	GATNNNNATC	2 cut(s)	159, 417
BsaJI	CCNNGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 151, 203, 349, 404
Bse1I	ACTGG	2 cut(s)	19, 197
Bse8I	GATNNNNATC	2 cut(s)	159, 417
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	146, 543
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	3 cut(s)	322, 507, 632
BseJI	GATNNNNATC	2 cut(s)	159, 417
BseLI	CCNNNNNNNGG	5 cut(s)	118, 151, 203, 349, 404
BseMII	CTCAG	3 cut(s)	366, 489, 639
BseNI	ACTGG	2 cut(s)	19, 197
BseRI	GAGGAG	2 cut(s)	83, 250
BseXI	GCAGC	4 cut(s)	265, 483, 544, 547
BseYI	CCCAGC	1 cut(s)	633
BshFI	GGCC	3 cut(s)	122, 207, 614
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	5 cut(s)	118, 151, 203, 349, 404
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	122, 207, 614
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	160, 352, 550
BspANI	GGCC	3 cut(s)	122, 207, 614
BspCNI	CTCAG	3 cut(s)	367, 488, 640
BspEI	TCCGGA	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	180, 354
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	4 cut(s)	168, 347, 360, 558
BsrI	ACTGG	2 cut(s)	19, 197
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	160, 352, 550
Bst2UI	CCWGG	2 cut(s)	146, 543
BstDEI	CTNAG	4 cut(s)	375, 475, 485, 648
BstENI	CCTNNNNNAGG	3 cut(s)	116, 149, 347
BstF5I	GGATG	3 cut(s)	322, 507, 632
BstKTI	GATC	3 cut(s)	163, 355, 553
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	160, 352, 550
BstNI	CCWGG	2 cut(s)	146, 543
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	2 cut(s)	144, 541
BstSFI	CTRYAG	2 cut(s)	76, 279
BstV1I	GCAGC	4 cut(s)	265, 483, 544, 547
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	3 cut(s)	160, 352, 550
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	3 cut(s)	160, 352, 550
BsuRI	GGCC	3 cut(s)	122, 207, 614
BtsCI	GGATG	3 cut(s)	322, 507, 632
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	3 cut(s)	127, 217, 606
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	4 cut(s)	375, 475, 485, 648
DpnI	GATC	3 cut(s)	162, 354, 552
DpnII	GATC	3 cut(s)	160, 352, 550
DraI	TTTAAA	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	612
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	21
Eco32I	GATATC	4 cut(s)	132, 214, 340, 388
EcoNI	CCTNNNNNAGG	3 cut(s)	116, 149, 347
EcoRII	CCWGG	2 cut(s)	144, 541
EcoRV	GATATC	4 cut(s)	132, 214, 340, 388
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	3 cut(s)	130, 220, 609
FaiI	YATR	9 cut(s)	6, 128, 218, 330, 452, 533, 567, 607, 658
FatI	CATG	3 cut(s)	126, 216, 605
Fnu4HI	GCNGC	4 cut(s)	279, 472, 558, 561
FokI	GGATG	3 cut(s)	329, 514, 639
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	4 cut(s)	279, 472, 558, 561
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	4 cut(s)	279, 472, 558, 561
GsaI	CCCAGC	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	122, 207, 614
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	130, 220, 609
HinfI	GANTC	3 cut(s)	270, 290, 571
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	136, 376, 576
Hpy188III	TCNNGA	9 cut(s)	37, 50, 176, 217, 383, 398, 428, 446, 460
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	584
HpyCH4V	TGCA	3 cut(s)	8, 281, 505
HpyF3I	CTNAG	4 cut(s)	375, 475, 485, 648
Hsp92II	CATG	3 cut(s)	130, 220, 609
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	160, 352, 550
LmnI	GCTCC	3 cut(s)	178, 178, 509
Lsp1109I	GCAGC	4 cut(s)	265, 483, 544, 547
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	162, 354, 552
MboI	GATC	3 cut(s)	160, 352, 550
MboII	GAAGA	3 cut(s)	203, 260, 443
MflI	RGATCY	3 cut(s)	160, 352, 550
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	3 cut(s)	393, 455, 526
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	45, 380
MnlI	CCTC	8 cut(s)	57, 61, 112, 133, 145, 271, 370, 570
Mox20I	TGGCCA	1 cut(s)	614
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	2 cut(s)	198, 294
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	2 cut(s)	168, 600
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	614
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	146, 543
MvaI	CCWGG	2 cut(s)	146, 543
NdeII	GATC	3 cut(s)	160, 352, 550
NlaIII	CATG	3 cut(s)	130, 220, 609
NlaIV	GGNNCC	2 cut(s)	180, 354
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	609
PagI	TCATGA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	122
PciI	ACATGT	1 cut(s)	605
PdmI	GAANNNNTTC	2 cut(s)	198, 294
PfeI	GAWTC	2 cut(s)	290, 571
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	280, 473, 559, 562
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PscI	ACATGT	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	144, 541
PspFI	CCCAGC	1 cut(s)	633
PspGI	CCWGG	2 cut(s)	144, 541
PspN4I	GGNNCC	2 cut(s)	180, 354
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	3 cut(s)	160, 352, 550
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	168, 600
SatI	GCNGC	4 cut(s)	279, 472, 558, 561
Sau3AI	GATC	3 cut(s)	160, 352, 550
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	146, 543
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	2 cut(s)	76, 279
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	3 cut(s)	48, 264, 272
SmoI	CTYRAG	3 cut(s)	48, 264, 272
Sse9I	AATT	3 cut(s)	393, 455, 526
SseBI	AGGCCT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	144, 541
TasI	AATT	3 cut(s)	393, 455, 526
TfiI	GAWTC	2 cut(s)	290, 571
Tru1I	TTAA	2 cut(s)	168, 600
Tru9I	TTAA	2 cut(s)	168, 600
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	4 cut(s)	278, 471, 557, 560
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	203
XagI	CCTNNNNNAGG	3 cut(s)	116, 149, 347
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	609
XmnI	GAANNNNTTC	2 cut(s)	198, 294
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.