Rorug01G0424900

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
52562325 .. 52565808
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0424900.1

Sequence Viewer

Length: 1443 bp
ATGAGTCTATTTGGGAGATTAAGGATGGTCGTTTTACTGGCGGCAATGATGGTGGTGAAGGCTTCGCAGGACTATGGGGATGCATTGACGAAAAGCATATTGTTCTTTGAGGGCCAGAGGTCAGGAAAGCTACCCTCTCGTCAGAGAATGACTTGGAGGAGAGATTCTGCACTTCAGGATGGACTTCAGATTGGTGTTGATTTGGTAGGGGGTTACTACGATGCCGGTGACAATGTGAAGTTCAACTTTCCGATGGCTTTCTCGACAACAATGCTGGCATGGAGCGTGTTAGAGTTCGGGAAGGACATGGGTGCAGACCTACCCCGTGCACTTGATGCCATTCGATGGGGAACGGACTACTTCCTCAAAGCCACAAGCATTCCTGGCTTTGTGTTTGCCCAAGTTGGTGAACCTTACGGCGACCACAATTGTTGGGAGAGGCCTGAGGACATGGACACCCCAAGAAACCCCTATGCAGTTAGCAAACAGTTCCCAGGTTCTGAAGTCTCGGCAGAGATTGCAGCTGCCCTAGCAGCCTCTTCCATGGTTTTTAAGCATGTTGATTTGGAATACTCTGCAAGGCTTCTCAAAAGGGCTAGAATGGTGTTTGAGTTTGCAGAAACATACCGGGGCTCCTATAATGATGCTCTTGGACCATGGGTTTGTCCATTTTACTGTGATTTTAGTGGCTATGAGGACGAATTGATTTGGGGAGCAACATGGTTGTTTAAGGCAACTACGGACCCTACATACTCGAACTATGTCGTAGAAAACGTACACGAGCTGGAAAAATCTGTCATGAGAAATGTAAATGGTTTACCATATTCTTCTGTAGGTGGAAGCTTTGCCCAATTTGGATGGGATTCAAAGCACGCAGGCATCAATGTACTGGCTTCCAAGTTGTTCATGTCTAGCATCGATATCGGTTCTAGTCCTTTCATTCACAATTCCGACAAGTTCATATGCAGTTTGTTACCTGAATCGCCAACCATATCAGTCTCATATTCTCCAGGTGGGCTTTTATTTAAACCTGGAGGAAGTAATCTGCAGCATGCAACAACTCTGTCATTTCTCTTGGTTGTTTATTCTCGTTATCTGAAGCAAGCCAATAGAGTAGTTTACTGTAACAATGTTGTTGCCAGTCCAGCTAGACTTGTTCAAGTTGCAAAAGGCCAGGTGGATTACATACTAGGAAGTAACCCATTGAACATGTCATATACGGTCGGGTATGGCAAAAAGTTTCCTCAGAGAATTCATCATCGGGGGTCATCGTTACCGTCGGTTGGTCAACACCCTCAACAGATTGGTTGCAAAGACGGAAGCGTTTACTTTGACAGCAGTAACCCAAATCCTAATATGCTAACTGGGGCTGTTGTTGGAGGACCAGATATAAAGGATTCATATGAAGATTCTCGAGTGGATTTTGTGCAGTCCGAGTTGTAG

Protein Analysis

480

Amino Acids

53.06

Weight (kDa)

6.16

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 25 - 479 4.8e-142 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 345
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 1251
AcuI CTGAAG 4 cut(s) 158, 170, 522, 1118
AfaI GTAC 2 cut(s) 777, 888
AfiI CCNNNNNNNGG 2 cut(s) 345, 1283
AflIII ACRYGT 1 cut(s) 1209
AgsI TTSAA 4 cut(s) 244, 867, 1160, 1207
AjnI CCWGG 5 cut(s) 382, 493, 1009, 1030, 1173
AluBI AGCT 5 cut(s) 130, 524, 784, 843, 1148
AluI AGCT 5 cut(s) 130, 524, 784, 843, 1148
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 511, 1003
Alw44I GTGCAC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 1413
AoxI GGCC 3 cut(s) 112, 440, 1171
ApaLI GTGCAC 1 cut(s) 327
ApeKI GCWGC 4 cut(s) 521, 524, 533, 1048
ApoI RAATTY 1 cut(s) 1251
ArsI GACNNNNNNTTYG 2 cut(s) 645, 677
AspS9I GGNCC 4 cut(s) 112, 653, 742, 1382
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 3 cut(s) 67, 239, 419
AvaI CYCGRG 1 cut(s) 1413
AvaII GGWCC 3 cut(s) 653, 742, 1382
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 635
BauI CACGAG 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 4 cut(s) 511, 533, 545, 1060
BccI CCATC 6 cut(s) 19, 43, 173, 247, 339, 852
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 4 cut(s) 253, 287, 904, 938
BciT130I CCWGG 5 cut(s) 384, 495, 1011, 1032, 1175
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 2 cut(s) 511, 1003
BfaI CTAG 6 cut(s) 530, 597, 912, 930, 1149, 1190
BfmI CTRYAG 2 cut(s) 831, 1046
BisI GCNGC 5 cut(s) 42, 522, 525, 534, 1049
BlsI GCNGC 5 cut(s) 43, 523, 526, 535, 1050
Bme1390I CCNGG 6 cut(s) 384, 495, 629, 1011, 1032, 1175
Bme18I GGWCC 3 cut(s) 653, 742, 1382
BmeT110I CYCGRG 1 cut(s) 1413
BmgT120I GGNCC 4 cut(s) 112, 653, 742, 1382
BmiI GGNNCC 2 cut(s) 634, 744
BmrFI CCNGG 6 cut(s) 384, 495, 629, 1011, 1032, 1175
BmrI ACTGGG 1 cut(s) 1374
BmsI GCATC 6 cut(s) 70, 211, 325, 634, 888, 924
BmuI ACTGGG 1 cut(s) 1374
BpmI CTGGAG 2 cut(s) 993, 1053
BpuMI CCSGG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 918
BsaJI CCNNGG 4 cut(s) 493, 543, 628, 656
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 1283
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 4 cut(s) 42, 894, 1140, 1369
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 5 cut(s) 384, 495, 1011, 1032, 1175
BseCI ATCGAT 1 cut(s) 918
BseDI CCNNGG 4 cut(s) 493, 543, 628, 656
BseGI GGATG 4 cut(s) 30, 85, 184, 863
BseLI CCNNNNNNNGG 2 cut(s) 345, 1283
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 435, 1259
BseNI ACTGG 4 cut(s) 42, 894, 1140, 1369
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 4 cut(s) 511, 533, 545, 1060
BsgI GTGCAG 2 cut(s) 153, 333
Bsh1285I CGRYCG 1 cut(s) 1224
BshFI GGCC 3 cut(s) 114, 442, 1173
BshVI ATCGAT 1 cut(s) 918
BsiEI CGRYCG 1 cut(s) 1224
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 1413
BsiSI CCGG 2 cut(s) 225, 628
BslI CCNNNNNNNGG 2 cut(s) 345, 1283
BsmAI GTCTC 2 cut(s) 511, 1003
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 3 cut(s) 114, 442, 1173
BsoBI CYCGRG 1 cut(s) 1413
Bsp1286I GDGCHC 2 cut(s) 331, 635
Bsp19I CCATGG 2 cut(s) 543, 656
BspACI CCGC 1 cut(s) 41
BspANI GGCC 3 cut(s) 114, 442, 1173
BspCNI CTCAG 2 cut(s) 436, 1258
BspDI ATCGAT 1 cut(s) 918
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 634, 744
BspMAI CTGCAG 1 cut(s) 1050
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 4 cut(s) 42, 894, 1140, 1369
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 4 cut(s) 493, 543, 628, 656
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 543, 656
Bst2BI CACGAG 1 cut(s) 779
Bst2UI CCWGG 5 cut(s) 384, 495, 1011, 1032, 1175
Bst4CI ACNGT 5 cut(s) 489, 677, 1124, 1222, 1278
Bst6I CTCTTC 1 cut(s) 544
BstAPI GCANNNNNTGC 2 cut(s) 335, 518
BstC8I GCNNGC 5 cut(s) 276, 873, 877, 1053, 1104
BstDEI CTNAG 2 cut(s) 444, 1245
BstDSI CCRYGG 2 cut(s) 543, 656
BstF5I GGATG 4 cut(s) 30, 85, 184, 863
BstMAI GTCTC 2 cut(s) 511, 1003
BstMCI CGRYCG 1 cut(s) 1224
BstMWI GCNNNNNNNGC 6 cut(s) 335, 384, 518, 530, 533, 1145
BstNI CCWGG 5 cut(s) 384, 495, 1011, 1032, 1175
BstNSI RCATGY 3 cut(s) 560, 1055, 1213
BstSCI CCNGG 6 cut(s) 382, 493, 627, 1009, 1030, 1173
BstSFI CTRYAG 2 cut(s) 831, 1046
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 4 cut(s) 511, 533, 545, 1060
Bsu15I ATCGAT 1 cut(s) 918
Bsu36I CCTNAGG 1 cut(s) 444
BsuRI GGCC 3 cut(s) 114, 442, 1173
BsuTUI ATCGAT 1 cut(s) 918
BtgI CCRYGG 2 cut(s) 543, 656
BtsCI GGATG 4 cut(s) 30, 85, 184, 863
Cac8I GCNNGC 5 cut(s) 276, 873, 877, 1053, 1104
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 112, 653, 742, 1382
ClaI ATCGAT 1 cut(s) 918
Csp6I GTAC 2 cut(s) 776, 887
CspCI CAANNNNNGTGG 4 cut(s) 33, 68, 413, 448
CviQI GTAC 2 cut(s) 776, 887
DdeI CTNAG 2 cut(s) 444, 1245
DraI TTTAAA 1 cut(s) 1027
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco130I CCWWGG 2 cut(s) 543, 656
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 635
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 3 cut(s) 653, 742, 1382
Eco57I CTGAAG 4 cut(s) 158, 170, 522, 1118
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 1413
EcoRI GAATTC 1 cut(s) 1251
EcoRII CCWGG 5 cut(s) 382, 493, 1009, 1030, 1173
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 2 cut(s) 543, 656
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 2 cut(s) 543, 656
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FauNDI CATATG 2 cut(s) 962, 1402
Fnu4HI GCNGC 5 cut(s) 42, 522, 525, 534, 1049
FokI GGATG 4 cut(s) 37, 92, 191, 870
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 5 cut(s) 42, 522, 525, 534, 1049
FspBI CTAG 6 cut(s) 530, 597, 912, 930, 1149, 1190
GluI GCNGC 5 cut(s) 42, 522, 525, 534, 1049
GsuI CTGGAG 2 cut(s) 993, 1053
HaeIII GGCC 3 cut(s) 114, 442, 1173
HapII CCGG 2 cut(s) 225, 628
HincII GTYRAC 1 cut(s) 1289
HindII GTYRAC 1 cut(s) 1289
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 6 cut(s) 4, 164, 863, 980, 1397, 1409
HpaII CCGG 2 cut(s) 225, 628
HphI GGTGA 3 cut(s) 67, 239, 419
Hpy166II GTNNAC 7 cut(s) 329, 410, 778, 818, 1120, 1289, 1327
Hpy188I TCNGA 8 cut(s) 144, 189, 252, 502, 952, 1098, 1248, 1435
Hpy188III TCNNGA 6 cut(s) 123, 176, 262, 298, 799, 1413
Hpy8I GTNNAC 7 cut(s) 329, 410, 778, 818, 1120, 1289, 1327
Hpy99I CGWCG 1 cut(s) 1282
HpyAV CCTTC 2 cut(s) 52, 295
HpyCH4III ACNGT 5 cut(s) 489, 677, 1124, 1222, 1278
HpyCH4IV ACGT 1 cut(s) 774
HpyF10VI GCNNNNNNNGC 6 cut(s) 335, 384, 518, 530, 533, 1145
HpyF3I CTNAG 2 cut(s) 444, 1245
HpySE526I ACGT 1 cut(s) 774
LmnI GCTCC 3 cut(s) 282, 638, 713
Lsp1109I GCAGC 4 cut(s) 511, 533, 545, 1060
LweI GCATC 6 cut(s) 70, 211, 325, 634, 888, 924
MaeI CTAG 6 cut(s) 530, 597, 912, 930, 1149, 1190
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 7 cut(s) 212, 227, 972, 1124, 1196, 1272, 1340
MboII GAAGA 3 cut(s) 531, 819, 1418
MfeI CAATTG 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 331, 635
MluCI AATT 5 cut(s) 427, 701, 851, 946, 1251
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 975, 1357
Mph1103I ATGCAT 1 cut(s) 85
MseI TTAA 4 cut(s) 20, 552, 729, 1026
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 2 cut(s) 225, 628
MspR9I CCNGG 6 cut(s) 384, 495, 629, 1011, 1032, 1175
MunI CAATTG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 5 cut(s) 384, 495, 1011, 1032, 1175
MwoI GCNNNNNNNGC 6 cut(s) 335, 384, 518, 530, 533, 1145
NciI CCSGG 1 cut(s) 629
NcoI CCATGG 2 cut(s) 543, 656
NdeI CATATG 2 cut(s) 962, 1402
NlaIV GGNNCC 2 cut(s) 634, 744
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 3 cut(s) 560, 1055, 1213
PaeI GCATGC 1 cut(s) 1055
PaeR7I CTCGAG 1 cut(s) 1413
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 1 cut(s) 442
PciI ACATGT 1 cut(s) 1209
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 5 cut(s) 164, 863, 980, 1397, 1409
PflMI CCANNNNNTGG 1 cut(s) 345
PkrI GCNGC 5 cut(s) 43, 523, 526, 535, 1050
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 1209
Psp6I CCWGG 5 cut(s) 382, 493, 1009, 1030, 1173
PspGI CCWGG 5 cut(s) 382, 493, 1009, 1030, 1173
PspN4I GGNNCC 2 cut(s) 634, 744
PspPI GGNCC 4 cut(s) 112, 653, 742, 1382
PstI CTGCAG 1 cut(s) 1050
PstNI CAGNNNCTG 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 777, 888
RsaNI GTAC 2 cut(s) 776, 887
SaqAI TTAA 4 cut(s) 20, 552, 729, 1026
SatI GCNGC 5 cut(s) 42, 522, 525, 534, 1049
Sau96I GGNCC 4 cut(s) 112, 653, 742, 1382
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 6 cut(s) 384, 495, 629, 1011, 1032, 1175
SduI GDGCHC 2 cut(s) 331, 635
SfaNI GCATC 6 cut(s) 70, 211, 325, 634, 888, 924
SfcI CTRYAG 2 cut(s) 831, 1046
Sfr274I CTCGAG 1 cut(s) 1413
SinI GGWCC 3 cut(s) 653, 742, 1382
SlaI CTCGAG 1 cut(s) 1413
SmlI CTYRAG 1 cut(s) 1413
SmoI CTYRAG 1 cut(s) 1413
SphI GCATGC 1 cut(s) 1055
Sse9I AATT 5 cut(s) 427, 701, 851, 946, 1251
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 1 cut(s) 41
SspMI CTAG 6 cut(s) 530, 597, 912, 930, 1149, 1190
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 6 cut(s) 382, 493, 627, 1009, 1030, 1173
StyI CCWWGG 2 cut(s) 543, 656
TaaI ACNGT 5 cut(s) 489, 677, 1124, 1222, 1278
TaiI ACGT 1 cut(s) 777
TaqI TCGA 5 cut(s) 263, 343, 755, 918, 1414
TasI AATT 5 cut(s) 427, 701, 851, 946, 1251
TatI WGTACW 1 cut(s) 886
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 5 cut(s) 164, 863, 980, 1397, 1409
Tru1I TTAA 4 cut(s) 20, 552, 729, 1026
Tru9I TTAA 4 cut(s) 20, 552, 729, 1026
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 4 cut(s) 521, 524, 533, 1048
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 6 cut(s) 895, 928, 949, 1244, 1389, 1419
TspGWI ACGGA 3 cut(s) 368, 755, 1332
Van91I CCANNNNNTGG 1 cut(s) 345
VneI GTGCAC 1 cut(s) 327
VpaK11BI GGWCC 3 cut(s) 653, 742, 1382
XapI RAATTY 1 cut(s) 1251
XceI RCATGY 3 cut(s) 560, 1055, 1213
XhoI CTCGAG 1 cut(s) 1413
XspI CTAG 6 cut(s) 530, 597, 912, 930, 1149, 1190
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.