Rroxscaffold_4G00278990

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003858
Physical Location & Seq
Reverse (-)
1905652 .. 1909676
4025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278990.1

Sequence Viewer

Length: 879 bp
ATGGGGAAGCGGAACTATCTTGCAGTAAAATCCAAATGCATTGAATTGGAAACTGGAAAGTATAGATTGATGACCACAGTGGCTAGGTTTTGGGAGGAGATATTTATCAAGAATAACCTTGTTGAGGCCTCCATGATATCAGAATACGACCTGGGAGGAGATTGGGATCTATTTAAAGCTCCAGAGCCTATCATCGAAGAACCAGTTCTCAGCCTTGATCCCATGACAGCAGCCTCAATGATGTCTTGTGGGGAAGATGTCATCTCGTCTCAAGGACTCAAGGCTTCAGACATTGAATCACTTCAAAGTGAACAGCTATTGGATGATGTCTTCTATGACAAGGATATCCTAGAAAAGGATCCAACAGAAACACCACTTTCAGAGGTCCTTGATATCAAAATTCCTGATCTGGGGACAGATGGAAATCAAATTCAAGAAGACAAACCACTTCGTGACATACAATTCCAGAAAAGTGTCAGCTCAGGATGTCTAAGCTCAACGGAGTGGATGCAAGGAGCTGCAACGAAGCCTAATTTTATGGAATTACCTGGAATGGATTTTGCTGCTGCTTATGGGATTCGGAGGGCATTTAGTGAAGGAGATATTAAGACTCTTGGTAGCGGTAACATAAGCCTCGTCCATCCTCCTCTTGAGCGGTCGATTATCATCACCAACTGCACCACTGAGGAACGCAGGGAAAAGCTTTCAAGATATAGGAACAAGAAGACAAAGAGGAACTTCGGCAGGAAAATCAAGTATGCATGCAGGAAGGCTCTTGCTGACAACCAGCCGAGGATCCGTGGAAGGAATGAAGTAGCTGCTAGATTCCAAAGATGTAATATGGAAGAGGTCAGTAGTGGTATTAAGCCTGGCATGTAG

Protein Analysis

292

Amino Acids

32.9

Weight (kDa)

5.43

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 231 - 269 6.3e-14 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 655
AciI CCGC 3 cut(s) 10, 621, 655
AclWI GGATC 6 cut(s) 174, 212, 353, 366, 790, 803
AcsI RAATTY 2 cut(s) 399, 429
AcuI CTGAAG 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 452
AfiI CCNNNNNNNGG 3 cut(s) 124, 355, 410
AgsI TTSAA 5 cut(s) 44, 296, 305, 434, 708
AjnI CCWGG 3 cut(s) 150, 547, 868
AluBI AGCT 7 cut(s) 179, 316, 480, 495, 518, 703, 818
AluI AGCT 7 cut(s) 179, 316, 480, 495, 518, 703, 818
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 6 cut(s) 174, 212, 353, 366, 790, 803
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 5 cut(s) 230, 518, 563, 566, 818
ApoI RAATTY 2 cut(s) 399, 429
Asp700I GAANNNNTTC 2 cut(s) 204, 300
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 661
AvaII GGWCC 1 cut(s) 385
BamHI GGATCC 2 cut(s) 358, 795
BbsI GAAGAC 3 cut(s) 322, 444, 731
BbvI GCAGC 5 cut(s) 242, 505, 550, 553, 805
BccI CCATC 2 cut(s) 413, 648
BciT130I CCWGG 3 cut(s) 152, 549, 870
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 3 cut(s) 84, 350, 822
BisI GCNGC 5 cut(s) 231, 519, 564, 567, 819
BlsI GCNGC 5 cut(s) 232, 520, 565, 568, 820
Bme1390I CCNGG 3 cut(s) 152, 549, 870
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 360, 797
BmrFI CCNGG 3 cut(s) 152, 549, 870
BmsI GCATC 1 cut(s) 498
BpiI GAAGAC 3 cut(s) 322, 444, 731
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 481
BpuEI CTTGAG 3 cut(s) 255, 263, 671
BsaBI GATNNNNATC 4 cut(s) 104, 165, 423, 665
BsaJI CCNNGG 3 cut(s) 151, 791, 799
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 355, 410
Bse1I ACTGG 2 cut(s) 58, 203
Bse8I GATNNNNATC 4 cut(s) 104, 165, 423, 665
BseBI CCWGG 3 cut(s) 152, 549, 870
BseDI CCNNGG 3 cut(s) 151, 791, 799
BseGI GGATG 4 cut(s) 328, 491, 513, 640
BseJI GATNNNNATC 4 cut(s) 104, 165, 423, 665
BseLI CCNNNNNNNGG 3 cut(s) 124, 355, 410
BseMII CTCAG 3 cut(s) 223, 495, 675
BseNI ACTGG 2 cut(s) 58, 203
BseRI GAGGAG 3 cut(s) 110, 171, 636
BseXI GCAGC 5 cut(s) 242, 505, 550, 553, 805
BsgI GTGCAG 1 cut(s) 661
Bsh1285I CGRYCG 1 cut(s) 659
BshFI GGCC 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 124, 355, 410
BsmAI GTCTC 1 cut(s) 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 5 cut(s) 166, 217, 358, 406, 795
BspACI CCGC 3 cut(s) 10, 621, 655
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 222, 494, 676
BspLI GGNNCC 2 cut(s) 360, 797
BspPI GGATC 6 cut(s) 174, 212, 353, 366, 790, 803
BsrBI CCGCTC 1 cut(s) 655
BsrI ACTGG 2 cut(s) 58, 203
BssECI CCNNGG 3 cut(s) 151, 791, 799
BssMI GATC 5 cut(s) 166, 217, 358, 406, 795
Bst2UI CCWGG 3 cut(s) 152, 549, 870
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 840
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 4 cut(s) 209, 481, 491, 684
BstDSI CCRYGG 1 cut(s) 799
BstENI CCTNNNNNAGG 2 cut(s) 122, 353
BstF5I GGATG 4 cut(s) 328, 491, 513, 640
BstKTI GATC 5 cut(s) 169, 220, 361, 409, 798
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 166, 217, 358, 406, 795
BstMCI CGRYCG 1 cut(s) 659
BstNI CCWGG 3 cut(s) 152, 549, 870
BstNSI RCATGY 2 cut(s) 765, 877
BstSCI CCNGG 3 cut(s) 150, 547, 868
BstV1I GCAGC 5 cut(s) 242, 505, 550, 553, 805
BstV2I GAAGAC 3 cut(s) 322, 444, 731
BstX2I RGATCY 3 cut(s) 166, 358, 795
BstYI RGATCY 3 cut(s) 166, 358, 795
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 799
BtsCI GGATG 4 cut(s) 328, 491, 513, 640
BtsIMutI CAGTG 2 cut(s) 84, 681
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 385
CviAII CATG 4 cut(s) 133, 223, 762, 874
DdeI CTNAG 4 cut(s) 209, 481, 491, 684
DpnI GATC 5 cut(s) 168, 219, 360, 408, 797
DpnII GATC 5 cut(s) 166, 217, 358, 406, 795
DraI TTTAAA 1 cut(s) 175
DraIII CACNNNGTG 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco147I AGGCCT 1 cut(s) 128
Eco32I GATATC 3 cut(s) 138, 346, 394
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 270
EcoNI CCTNNNNNAGG 2 cut(s) 122, 353
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 150, 547, 868
EcoRV GATATC 3 cut(s) 138, 346, 394
EcoT22I ATGCAT 2 cut(s) 41, 763
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 4 cut(s) 136, 226, 765, 877
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 427
FatI CATG 4 cut(s) 132, 222, 761, 873
Fnu4HI GCNGC 5 cut(s) 231, 519, 564, 567, 819
FokI GGATG 4 cut(s) 335, 498, 520, 627
Fsp4HI GCNGC 5 cut(s) 231, 519, 564, 567, 819
FspBI CTAG 3 cut(s) 84, 350, 822
GluI GCNGC 5 cut(s) 231, 519, 564, 567, 819
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 4 cut(s) 136, 226, 765, 877
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 5 cut(s) 276, 296, 577, 610, 825
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 142, 289, 382, 582
Hpy188III TCNNGA 9 cut(s) 109, 182, 404, 434, 452, 466, 483, 650, 708
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 590, 763, 798
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 7 cut(s) 23, 39, 511, 521, 678, 761, 765
HpyF3I CTNAG 4 cut(s) 209, 481, 491, 684
Hsp92II CATG 4 cut(s) 136, 226, 765, 877
Kzo9I GATC 5 cut(s) 166, 217, 358, 406, 795
LmnI GCTCC 2 cut(s) 184, 515
Lsp1109I GCAGC 5 cut(s) 242, 505, 550, 553, 805
LweI GCATC 1 cut(s) 498
MaeI CTAG 3 cut(s) 84, 350, 822
MaeIII GTNAC 2 cut(s) 452, 623
MalI GATC 5 cut(s) 168, 219, 360, 408, 797
MbiI CCGCTC 1 cut(s) 655
MboI GATC 5 cut(s) 166, 217, 358, 406, 795
MboII GAAGA 6 cut(s) 209, 266, 322, 449, 736, 857
MflI RGATCY 3 cut(s) 166, 358, 795
MluCI AATT 6 cut(s) 44, 399, 429, 461, 532, 542
MlyI GAGTC 2 cut(s) 270, 604
MmeI TCCRAC 1 cut(s) 386
Mph1103I ATGCAT 2 cut(s) 41, 763
MroXI GAANNNNTTC 2 cut(s) 204, 300
MseI TTAA 3 cut(s) 174, 606, 864
MspR9I CCNGG 3 cut(s) 152, 549, 870
MvaI CCWGG 3 cut(s) 152, 549, 870
NdeII GATC 5 cut(s) 166, 217, 358, 406, 795
NlaIII CATG 4 cut(s) 136, 226, 765, 877
NlaIV GGNNCC 2 cut(s) 360, 797
NmeAIII GCCGAG 1 cut(s) 816
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 2 cut(s) 41, 763
NspI RCATGY 2 cut(s) 765, 877
PaeI GCATGC 1 cut(s) 765
PceI AGGCCT 1 cut(s) 128
PdmI GAANNNNTTC 2 cut(s) 204, 300
PfeI GAWTC 3 cut(s) 296, 577, 825
PkrI GCNGC 5 cut(s) 232, 520, 565, 568, 820
PleI GAGTC 2 cut(s) 270, 604
PpsI GAGTC 2 cut(s) 270, 604
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 150, 547, 868
PspGI CCWGG 3 cut(s) 150, 547, 868
PspN4I GGNNCC 2 cut(s) 360, 797
PspPI GGNCC 1 cut(s) 385
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 3 cut(s) 166, 358, 795
SaqAI TTAA 3 cut(s) 174, 606, 864
SatI GCNGC 5 cut(s) 231, 519, 564, 567, 819
Sau3AI GATC 5 cut(s) 166, 217, 358, 406, 795
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 2 cut(s) 270, 604
ScrFI CCNGG 3 cut(s) 152, 549, 870
SfaNI GCATC 1 cut(s) 498
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 3 cut(s) 270, 278, 650
SmoI CTYRAG 3 cut(s) 270, 278, 650
SphI GCATGC 1 cut(s) 765
Sse9I AATT 6 cut(s) 44, 399, 429, 461, 532, 542
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 3 cut(s) 10, 621, 655
SspMI CTAG 3 cut(s) 84, 350, 822
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 3 cut(s) 150, 547, 868
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 195, 659
TasI AATT 6 cut(s) 44, 399, 429, 461, 532, 542
TfiI GAWTC 3 cut(s) 296, 577, 825
Tru1I TTAA 3 cut(s) 174, 606, 864
Tru9I TTAA 3 cut(s) 174, 606, 864
TscAI CASTG 2 cut(s) 84, 688
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 5 cut(s) 230, 518, 563, 566, 818
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 2 cut(s) 515, 788
TspRI CASTG 2 cut(s) 84, 688
VpaK11BI GGWCC 1 cut(s) 385
XagI CCTNNNNNAGG 2 cut(s) 122, 353
XapI RAATTY 2 cut(s) 399, 429
XceI RCATGY 2 cut(s) 765, 877
XmnI GAANNNNTTC 2 cut(s) 204, 300
XspI CTAG 3 cut(s) 84, 350, 822
Zsp2I ATGCAT 2 cut(s) 41, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.