Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

35038425 .. 35041872

Gene Structure 3448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1289700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTATGCAGAGACTGGGCTTTTGTTCCCCTATTTACAGAATTCTCCTCAGGATTTCCAGCAGCTGGAGGAGTTCTGCAGAACCCAAAAGTTAAATGCTCCATTGAATTGCTTCTCCGAGGCTTCGATGATGGCGGATTATGACCTGGGAGGAGAATGGGATCTATTCAAGGCTCCAGAGCCTATCATCGAAGAACCGGACATTGGCCTTGATCCCATGACACCCATGACAGCAGCCATTTCAATGATATCTTGCGGCGAAGATGTCACCTCCTCGCAAGGACTCAAGGTTGCAGACTTTGAATCACTTCAAAGCGAGCAGCTTTTGAATGACGTCTTCTATGACAAGGATATCTTAGGGAAAGACACGATAGAAGCACCGCTTTCTGAGGCACTGGATATCAAAATTCCTGTTTTGGCAGTGGATGGAAATCATATTCAGGAAAACAAACCGCTCCGTGACATGTCGTTTCAGAAGAGTGTCAGCTCAGGATGTTTAACCTCAATGGACTGGGTGCACGGACCTTCAACGAAGCCAAGTTTTCTGGATTTTGCTGGGATGGATTTGGGTGCTTATGGGATTCGTAGAGCGTTCAGTGATGGAGATATTAAGACTCTCGGTAACAGTAACACAAGCCTCATCCAGTCCTCTGTAGAGCGGCCCATAGTTATCAGCAACTGCAGCAGGGAGGAACGCAGGGAAAAGCTTTCAAGATACCGCAACAAGAAGACAAAGAGGAACTTCGGCAGGAAAATCAAGTATGCGTGCAGGAAGGCTCTTGCAGACAACCAGCCGAGGATCCGCGGAAGGTTTGCCAAGACCGAAGAATCGTATGCCAAGAGGCAAAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

285

Amino Acids

31.92

Weight (kDa)

5.33

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	232 - 274	2.3e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccBSI	CCGCTC	2 cut(s)	454, 658
AccII	CGCG	1 cut(s)	804
AciI	CCGC	8 cut(s)	134, 255, 380, 452, 658, 718, 802, 804
AclWI	GGATC	4 cut(s)	168, 206, 793, 806
AcsI	RAATTY	2 cut(s)	40, 405
AcyI	GRCGYC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	64, 203
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	8 cut(s)	106, 169, 243, 302, 311, 328, 528, 711
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	4 cut(s)	64, 322, 486, 706
AluI	AGCT	4 cut(s)	64, 322, 486, 706
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	5
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	4 cut(s)	168, 206, 793, 806
AlwNI	CAGNNNCTG	3 cut(s)	14, 64, 678
AoxI	GGCC	2 cut(s)	205, 659
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	4 cut(s)	61, 233, 319, 681
ApoI	RAATTY	2 cut(s)	40, 405
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	2 cut(s)	110, 306
AspS9I	GGNCC	2 cut(s)	521, 660
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	798
BbsI	GAAGAC	2 cut(s)	328, 734
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	73, 245, 331, 693
BccI	CCATC	4 cut(s)	124, 419, 553, 593
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	5
BfmI	CTRYAG	3 cut(s)	76, 651, 679
BisI	GCNGC	6 cut(s)	62, 234, 256, 320, 659, 682
BlsI	GCNGC	6 cut(s)	63, 235, 257, 321, 660, 683
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	521, 660
BmiI	GGNNCC	2 cut(s)	174, 800
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	2 cut(s)	24, 520
BmuI	ACTGGG	2 cut(s)	24, 520
BpiI	GAAGAC	2 cut(s)	328, 734
BpmI	CTGGAG	2 cut(s)	86, 159
Bpu10I	CCTNAGC	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	4 cut(s)	117, 145, 794, 802
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 203
Bse1I	ACTGG	4 cut(s)	19, 399, 515, 643
Bse21I	CCTNAGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	117, 145, 794, 802
BseGI	GGATG	4 cut(s)	430, 497, 564, 639
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	64, 203
BseMII	CTCAG	3 cut(s)	62, 378, 501
BseNI	ACTGG	4 cut(s)	19, 399, 515, 643
BseRI	GAGGAG	4 cut(s)	36, 83, 165, 262
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	4 cut(s)	73, 245, 331, 693
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	787
Bsh1236I	CGCG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	207, 661
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	64, 203
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	207, 661
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	160, 211, 798
BspACI	CCGC	8 cut(s)	134, 255, 380, 452, 658, 718, 802, 804
BspANI	GGCC	2 cut(s)	207, 661
BspCNI	CTCAG	3 cut(s)	61, 379, 500
BspFNI	CGCG	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	174, 800
BspMAI	CTGCAG	2 cut(s)	80, 683
BspPI	GGATC	4 cut(s)	168, 206, 793, 806
BsrBI	CCGCTC	2 cut(s)	454, 658
BsrI	ACTGG	4 cut(s)	19, 399, 515, 643
BssECI	CCNNGG	4 cut(s)	117, 145, 794, 802
BssMI	GATC	3 cut(s)	160, 211, 798
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	626, 851
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	317, 766
BstDEI	CTNAG	4 cut(s)	48, 355, 387, 487
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	4 cut(s)	430, 497, 564, 639
BstFNI	CGCG	1 cut(s)	804
BstKTI	GATC	3 cut(s)	163, 214, 801
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	160, 211, 798
BstMWI	GCNNNNNNNGC	1 cut(s)	681
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	3 cut(s)	76, 651, 679
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	1 cut(s)	804
BstV1I	GCAGC	4 cut(s)	73, 245, 331, 693
BstV2I	GAAGAC	2 cut(s)	328, 734
BstX2I	RGATCY	2 cut(s)	160, 798
BstYI	RGATCY	2 cut(s)	160, 798
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	207, 661
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	4 cut(s)	430, 497, 564, 639
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	392, 426, 601
Cac8I	GCNNGC	2 cut(s)	317, 766
CaiI	CAGNNNCTG	3 cut(s)	14, 64, 678
Cfr13I	GGNCC	2 cut(s)	521, 660
Cfr42I	CCGCGG	1 cut(s)	805
CviAII	CATG	3 cut(s)	217, 226, 463
DdeI	CTNAG	4 cut(s)	48, 355, 387, 487
DpnI	GATC	3 cut(s)	162, 213, 800
DpnII	GATC	3 cut(s)	160, 211, 798
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EciI	GGCGGA	1 cut(s)	149
Eco32I	GATATC	3 cut(s)	249, 352, 400
Eco47I	GGWCC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	3 cut(s)	249, 352, 400
FaeI	CATG	3 cut(s)	220, 229, 466
FalI	AAGNNNNNCTT	6 cut(s)	338, 370, 366, 398, 725, 757
FatI	CATG	3 cut(s)	216, 225, 462
Fnu4HI	GCNGC	6 cut(s)	62, 234, 256, 320, 659, 682
FokI	GGATG	4 cut(s)	437, 504, 571, 626
Fsp4HI	GCNGC	6 cut(s)	62, 234, 256, 320, 659, 682
GluI	GCNGC	6 cut(s)	62, 234, 256, 320, 659, 682
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	2 cut(s)	86, 159
HaeIII	GGCC	2 cut(s)	207, 661
HapII	CCGG	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	220, 229, 466
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	5 cut(s)	282, 302, 580, 613, 827
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	3 cut(s)	118, 388, 474
Hpy188III	TCNNGA	6 cut(s)	50, 176, 440, 489, 545, 711
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	534, 766, 801
HpyCH4III	ACNGT	2 cut(s)	626, 851
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	8, 78, 293, 517, 681, 768, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	681
HpyF3I	CTNAG	4 cut(s)	48, 355, 387, 487
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	220, 229, 466
KspI	CCGCGG	1 cut(s)	805
Kzo9I	GATC	3 cut(s)	160, 211, 798
LmnI	GCTCC	3 cut(s)	103, 178, 459
Lsp1109I	GCAGC	4 cut(s)	73, 245, 331, 693
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	4 cut(s)	265, 458, 620, 626
MalI	GATC	3 cut(s)	162, 213, 800
MbiI	CCGCTC	2 cut(s)	454, 658
MboI	GATC	3 cut(s)	160, 211, 798
MboII	GAAGA	6 cut(s)	203, 272, 328, 487, 739, 836
MflI	RGATCY	2 cut(s)	160, 798
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	3 cut(s)	40, 106, 405
MlyI	GAGTC	2 cut(s)	276, 607
MroXI	GAANNNNTTC	2 cut(s)	110, 306
MseI	TTAA	3 cut(s)	92, 497, 609
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	64, 804
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	804
MwoI	GCNNNNNNNGC	1 cut(s)	681
NdeII	GATC	3 cut(s)	160, 211, 798
NlaIII	CATG	3 cut(s)	220, 229, 466
NlaIV	GGNNCC	2 cut(s)	174, 800
NmeAIII	GCCGAG	1 cut(s)	819
NmuCI	GTSAC	2 cut(s)	265, 458
NspI	RCATGY	1 cut(s)	466
PciI	ACATGT	1 cut(s)	462
PdmI	GAANNNNTTC	2 cut(s)	110, 306
PfeI	GAWTC	3 cut(s)	302, 580, 827
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	63, 235, 257, 321, 660, 683
PleI	GAGTC	2 cut(s)	276, 607
PpsI	GAGTC	2 cut(s)	276, 607
PscI	ACATGT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	174, 800
PspPI	GGNCC	2 cut(s)	521, 660
PstI	CTGCAG	2 cut(s)	80, 683
PstNI	CAGNNNCTG	3 cut(s)	14, 64, 678
PsuI	RGATCY	2 cut(s)	160, 798
PvuII	CAGCTG	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	242
SacII	CCGCGG	1 cut(s)	805
SaqAI	TTAA	3 cut(s)	92, 497, 609
SatI	GCNGC	6 cut(s)	62, 234, 256, 320, 659, 682
Sau3AI	GATC	3 cut(s)	160, 211, 798
Sau96I	GGNCC	2 cut(s)	521, 660
SchI	GAGTC	2 cut(s)	276, 607
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	519
SfcI	CTRYAG	3 cut(s)	76, 651, 679
Sfr303I	CCGCGG	1 cut(s)	805
SgrBI	CCGCGG	1 cut(s)	805
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	40, 106, 405
SsiI	CCGC	8 cut(s)	134, 255, 380, 452, 658, 718, 802, 804
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	626, 851
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	125, 189
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	3 cut(s)	40, 106, 405
TauI	GCSGC	2 cut(s)	258, 661
TfiI	GAWTC	3 cut(s)	302, 580, 827
Tru1I	TTAA	3 cut(s)	92, 497, 609
Tru9I	TTAA	3 cut(s)	92, 497, 609
TscAI	CASTG	3 cut(s)	399, 426, 601
TseFI	GTSAC	2 cut(s)	265, 458
TseI	GCWGC	4 cut(s)	61, 233, 319, 681
Tsp45I	GTSAC	2 cut(s)	265, 458
TspGWI	ACGGA	2 cut(s)	446, 534
TspRI	CASTG	3 cut(s)	399, 426, 601
Van91I	CCANNNNNTGG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	40, 405
XceI	RCATGY	1 cut(s)	466
XmnI	GAANNNNTTC	2 cut(s)	110, 306
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.