Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

52590251 .. 52592687

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0425000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGTGTACCAATTCCCGGCTGTTGATAGCAGCAGGGTTGTTGGCAATGGCAACCGCCGCAAAAGTGACTCCACATAACTACGCAGATGCTTTGTCGAAGTCCATTTTGTTTTTTGAAGGCCAGAGATCTGGCAAGTTACCGAATTCTCAACGAATGAATTGGAGGAAAGATTCTGCCCTACATGATGGCAGCGATGTTCATAGGGATCTGGTGGGGGGTTACTATGATGCTGGTGACAATGTGAAGTTCAACTTTCCCATGGCCTTCACAACAACATTGTTGTTATGGAGCGTTCTAGAGTTTGGAGATTTGATGGGATCTGAACTTCAACATGCTTTGGAAGCTATAAGATGGGCAACTGATTATTTTCTTAAGGCCACAAATGATCCTGGTTCAGTAGTTGGCGTAGTAGGCGACCCCAACGGAGATCATGCTTGTTGGCAAAGGCCTGAAGACATGCATGGATACCCCAAGAACCACATATATCAGTATCAGGGATCTTACAATACTAGTATTGGCGACGGAGCCTGCCCATTTTACTGCGATTTTAGTGGCTACATGGATGAATTGATTTGGGGAGCTTCATGGCTATACAAGGCAACAAAGGCACCAAATTATTGGAAATATGTCAAAGACCACATACACAATCTGGAGTCGTCAAACACTGTAGTGAGAAATGTGGATGGTTCTCCTGTTCCATTTGTTGGTGGTGACATTACTGAATTCGGATGGGATAGCAAGCATGCCGGCATCAACATACTTGTTTCTCAATGGGTTATGACTGATCCAGCCAATTGCAAACCGTTCATTCCCAAAGCTGACCAGCTTATATGCTCCATTCTGCCTGAATCACCAGCTCCCAAATCAGTCACGTATTCACCAGGTGGACTCTTGTTCAAACCTGGATCTTGTAACCTGCAACACACGACATCCTTATCATTTCTTCTTATAGTTTATGCTCGATACCTGAAAGGTGCCAACAGAACCATAAACTGTGGCAATAATGTTGTTCTTGGTCCAGCTCATTTGATAGATTTCACAAGAAAACAGGTTGATTATATACTCAGAAGCAACCCATTGGGGATGTCTTACATGGTGGGATATGGTACAAAATTTCCTCAAAGAATACATCATCGTGCTTCTGTGGTACCTTCCATGGATAAGCATCCACAGCACATGAAGTGCCATGACGGTGATCAGTATTTCAAAAGCCAAGCTCCAAATCAAAACTTGCTAATAGGAGCAGTTGTCGGGGGACCAGCCGAGAATGATACATTCGAAGATTCTCGATATGATCCTGGACAATCAGAGCCAGTTACATACAACAATGCCCCTTTTGTTGGTGTTTTGGCATTCTTTAAGGCTCTATATAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

459

Amino Acids

50.87

Weight (kDa)

6.48

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	27 - 158	1.2e-53	Glycosyl hydrolase family 9
Glyco_hydro_9	PF00759	163 - 450	2.5e-62	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	924
Acc65I	GGTACC	1 cut(s)	1147
AccB1I	GGYRCC	3 cut(s)	607, 974, 1147
AccB7I	CCANNNNNTGG	1 cut(s)	704
AciI	CCGC	2 cut(s)	54, 57
AclWI	GGATC	7 cut(s)	213, 325, 380, 505, 779, 913, 1289
AcsI	RAATTY	3 cut(s)	142, 722, 1112
AcuI	CTGAAG	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	3 cut(s)	7, 1108, 1149
AfiI	CCNNNNNNNGG	3 cut(s)	15, 704, 1340
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	116, 250, 329, 898, 1207
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	4 cut(s)	388, 880, 901, 1297
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	7 cut(s)	344, 581, 818, 826, 857, 1022, 1217
AluI	AGCT	7 cut(s)	344, 581, 818, 826, 857, 1022, 1217
AlwI	GGATC	7 cut(s)	213, 325, 380, 505, 779, 913, 1289
AoxI	GGCC	4 cut(s)	118, 261, 375, 446
ApeKI	GCWGC	2 cut(s)	29, 189
ApoI	RAATTY	3 cut(s)	142, 722, 1112
Asp718I	GGTACC	1 cut(s)	1147
AspS9I	GGNCC	2 cut(s)	1016, 1256
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	5 cut(s)	245, 722, 843, 870, 1205
AsuII	TTCGAA	1 cut(s)	1278
AvaII	GGWCC	2 cut(s)	1016, 1256
BanI	GGYRCC	3 cut(s)	607, 974, 1147
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	41, 201
BccI	CCATC	5 cut(s)	179, 307, 345, 677, 723
BciT130I	CCWGG	4 cut(s)	390, 882, 903, 1299
BciVI	GTATCC	1 cut(s)	458
BclI	TGATCA	1 cut(s)	1195
BcnI	CCSGG	1 cut(s)	16
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	2 cut(s)	296, 510
BfmI	CTRYAG	1 cut(s)	666
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	924
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	3 cut(s)	30, 57, 190
BlsI	GCNGC	3 cut(s)	31, 58, 191
Bme1390I	CCNGG	5 cut(s)	16, 390, 882, 903, 1299
Bme18I	GGWCC	2 cut(s)	1016, 1256
BmgT120I	GGNCC	2 cut(s)	1016, 1256
BmiI	GGNNCC	5 cut(s)	526, 609, 976, 1149, 1257
BmrFI	CCNGG	5 cut(s)	16, 390, 882, 903, 1299
BmsI	GCATC	4 cut(s)	76, 217, 759, 1174
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	671
Bpu14I	TTCGAA	1 cut(s)	1278
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	873
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaJI	CCNNGG	2 cut(s)	258, 1155
BsaXI	ACNNNNNCTCC	2 cut(s)	1233, 1263
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 704, 1340
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	1313
Bse3DI	GCAATG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	1164
BseBI	CCWGG	4 cut(s)	390, 882, 903, 1299
BseDI	CCNNGG	2 cut(s)	258, 1155
BseGI	GGATG	6 cut(s)	568, 688, 734, 929, 1089, 1165
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	3 cut(s)	15, 704, 1340
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	1078
BseNI	ACTGG	1 cut(s)	1313
BseXI	GCAGC	2 cut(s)	41, 201
BshFI	GGCC	4 cut(s)	120, 263, 377, 448
BshNI	GGYRCC	3 cut(s)	607, 974, 1147
BsiSI	CCGG	2 cut(s)	16, 747
BslFI	GGGAC	1 cut(s)	1269
BslI	CCNNNNNNNGG	3 cut(s)	15, 704, 1340
BsmFI	GGGAC	1 cut(s)	1269
BsmI	GAATGC	1 cut(s)	1352
BsnI	GGCC	4 cut(s)	120, 263, 377, 448
Bsp119I	TTCGAA	1 cut(s)	1278
Bsp19I	CCATGG	2 cut(s)	258, 1155
BspACI	CCGC	2 cut(s)	54, 57
BspANI	GGCC	4 cut(s)	120, 263, 377, 448
BspCNI	CTCAG	1 cut(s)	1077
BspLI	GGNNCC	5 cut(s)	526, 609, 976, 1149, 1257
BspMI	ACCTGC	1 cut(s)	924
BspPI	GGATC	7 cut(s)	213, 325, 380, 505, 779, 913, 1289
BspT104I	TTCGAA	1 cut(s)	1278
BspT107I	GGYRCC	3 cut(s)	607, 974, 1147
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	1313
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	258, 1155
BssT1I	CCWWGG	2 cut(s)	258, 1155
Bst2UI	CCWGG	4 cut(s)	390, 882, 903, 1299
Bst4CI	ACNGT	4 cut(s)	667, 804, 995, 1193
BstAFI	CTTAAG	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	873
BstBI	TTCGAA	1 cut(s)	1278
BstC8I	GCNNGC	4 cut(s)	529, 740, 744, 748
BstDEI	CTNAG	1 cut(s)	1064
BstDSI	CCRYGG	2 cut(s)	258, 1155
BstF5I	GGATG	6 cut(s)	568, 688, 734, 929, 1089, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 341, 411, 605, 1171
BstNI	CCWGG	4 cut(s)	390, 882, 903, 1299
BstNSI	RCATGY	3 cut(s)	335, 460, 746
BstSCI	CCNGG	5 cut(s)	14, 388, 880, 901, 1297
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	41, 201
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	5 cut(s)	125, 205, 317, 497, 905
BstXI	CCANNNNNNTGG	2 cut(s)	128, 618
BstYI	RGATCY	5 cut(s)	125, 205, 317, 497, 905
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	4 cut(s)	120, 263, 377, 448
BtgI	CCRYGG	2 cut(s)	258, 1155
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	6 cut(s)	568, 688, 734, 929, 1089, 1165
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	924
Cac8I	GCNNGC	4 cut(s)	529, 740, 744, 748
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	1016, 1256
CsiI	ACCWGGT	1 cut(s)	880
Csp6I	GTAC	3 cut(s)	6, 1107, 1148
CviQI	GTAC	3 cut(s)	6, 1107, 1148
DdeI	CTNAG	1 cut(s)	1064
DraIII	CACNNNGTG	1 cut(s)	884
Eco130I	CCWWGG	2 cut(s)	258, 1155
Eco147I	AGGCCT	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	1016, 1256
Eco57I	CTGAAG	1 cut(s)	471
EcoRI	GAATTC	2 cut(s)	142, 722
EcoRII	CCWGG	4 cut(s)	388, 880, 901, 1297
EcoT14I	CCWWGG	2 cut(s)	258, 1155
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	258, 1155
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	1269
FbaI	TGATCA	1 cut(s)	1195
Fnu4HI	GCNGC	3 cut(s)	30, 57, 190
FokI	GGATG	6 cut(s)	575, 695, 741, 916, 1096, 1152
Fsp4HI	GCNGC	3 cut(s)	30, 57, 190
FspBI	CTAG	2 cut(s)	296, 510
GluI	GCNGC	3 cut(s)	30, 57, 190
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	4 cut(s)	120, 263, 377, 448
HapII	CCGG	2 cut(s)	16, 747
HinfI	GANTC	6 cut(s)	67, 170, 653, 848, 888, 1283
HpaII	CCGG	2 cut(s)	16, 747
HphI	GGTGA	5 cut(s)	245, 722, 843, 870, 1205
Hpy166II	GTNNAC	2 cut(s)	6, 887
Hpy188I	TCNGA	4 cut(s)	322, 728, 1067, 1309
Hpy188III	TCNNGA	3 cut(s)	296, 650, 1287
Hpy8I	GTNNAC	2 cut(s)	6, 887
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	3 cut(s)	110, 274, 1161
HpyCH4III	ACNGT	4 cut(s)	667, 804, 995, 1193
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	3 cut(s)	460, 798, 919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 341, 411, 605, 1171
HpyF3I	CTNAG	1 cut(s)	1064
HpySE526I	ACGT	1 cut(s)	872
KpnI	GGTACC	1 cut(s)	1151
KroI	GCCGGC	1 cut(s)	746
KroNI	GCCGGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	1195
LmnI	GCTCC	7 cut(s)	288, 524, 578, 839, 862, 1222, 1241
Lsp1109I	GCAGC	2 cut(s)	41, 201
LweI	GCATC	4 cut(s)	76, 217, 759, 1174
MabI	ACCWGGT	1 cut(s)	880
MaeI	CTAG	2 cut(s)	296, 510
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	8 cut(s)	64, 135, 218, 233, 710, 868, 911, 1315
MboII	GAAGA	3 cut(s)	464, 935, 1292
MfeI	CAATTG	1 cut(s)	793
MflI	RGATCY	5 cut(s)	125, 205, 317, 497, 905
MluCI	AATT	8 cut(s)	10, 142, 157, 566, 613, 722, 793, 1112
MlyI	GAGTC	3 cut(s)	61, 662, 882
MnlI	CCTC	2 cut(s)	156, 1128
Mph1103I	ATGCAT	1 cut(s)	462
MroNI	GCCGGC	1 cut(s)	746
MseI	TTAA	2 cut(s)	372, 1359
MslI	CAYNNNNRTG	3 cut(s)	668, 1134, 1191
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	16, 747
MspR9I	CCNGG	5 cut(s)	16, 390, 882, 903, 1299
MunI	CAATTG	1 cut(s)	793
Mva1269I	GAATGC	1 cut(s)	1352
MvaI	CCWGG	4 cut(s)	390, 882, 903, 1299
MwoI	GCNNNNNNNGC	5 cut(s)	56, 341, 411, 605, 1171
NaeI	GCCGGC	1 cut(s)	748
NciI	CCSGG	1 cut(s)	16
NcoI	CCATGG	2 cut(s)	258, 1155
NgoMIV	GCCGGC	1 cut(s)	746
NlaIV	GGNNCC	5 cut(s)	526, 609, 976, 1149, 1257
NmeAIII	GCCGAG	1 cut(s)	1288
NmuCI	GTSAC	4 cut(s)	64, 233, 710, 868
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	3 cut(s)	335, 460, 746
NspV	TTCGAA	1 cut(s)	1278
OliI	CACNNNNGTG	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	1352
PdiI	GCCGGC	1 cut(s)	748
PfeI	GAWTC	3 cut(s)	170, 848, 1283
PflMI	CCANNNNNTGG	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	1297
PkrI	GCNGC	3 cut(s)	31, 58, 191
PleI	GAGTC	3 cut(s)	61, 661, 882
PpsI	GAGTC	3 cut(s)	61, 661, 882
Ppu21I	YACGTR	1 cut(s)	873
Psp6I	CCWGG	4 cut(s)	388, 880, 901, 1297
PspGI	CCWGG	4 cut(s)	388, 880, 901, 1297
PspN4I	GGNNCC	5 cut(s)	526, 609, 976, 1149, 1257
PspPI	GGNCC	2 cut(s)	1016, 1256
PsuI	RGATCY	5 cut(s)	125, 205, 317, 497, 905
RsaI	GTAC	3 cut(s)	7, 1108, 1149
RsaNI	GTAC	3 cut(s)	6, 1107, 1148
RseI	CAYNNNNRTG	3 cut(s)	668, 1134, 1191
SaqAI	TTAA	2 cut(s)	372, 1359
SatI	GCNGC	3 cut(s)	30, 57, 190
Sau96I	GGNCC	2 cut(s)	1016, 1256
SchI	GAGTC	3 cut(s)	61, 662, 882
ScrFI	CCNGG	5 cut(s)	16, 390, 882, 903, 1299
SexAI	ACCWGGT	1 cut(s)	880
SfaNI	GCATC	4 cut(s)	76, 217, 759, 1174
SfcI	CTRYAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	1278
SinI	GGWCC	2 cut(s)	1016, 1256
SmiMI	CAYNNNNRTG	3 cut(s)	668, 1134, 1191
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	509
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	8 cut(s)	10, 142, 157, 566, 613, 722, 793, 1112
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	54, 57
SspMI	CTAG	2 cut(s)	296, 510
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	5 cut(s)	14, 388, 880, 901, 1297
StyI	CCWWGG	2 cut(s)	258, 1155
TaaI	ACNGT	4 cut(s)	667, 804, 995, 1193
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	4 cut(s)	95, 961, 1278, 1288
TasI	AATT	8 cut(s)	10, 142, 157, 566, 613, 722, 793, 1112
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	170, 848, 1283
Tru1I	TTAA	2 cut(s)	372, 1359
Tru9I	TTAA	2 cut(s)	372, 1359
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	4 cut(s)	64, 233, 710, 868
TseI	GCWGC	2 cut(s)	29, 189
Tsp45I	GTSAC	4 cut(s)	64, 233, 710, 868
TspDTI	ATGAA	6 cut(s)	170, 188, 573, 579, 796, 1193
TspGWI	ACGGA	2 cut(s)	438, 537
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	704
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	1016, 1256
XapI	RAATTY	3 cut(s)	142, 722, 1112
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	3 cut(s)	335, 460, 746
XspI	CTAG	2 cut(s)	296, 510
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.