Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

29407663 .. 29411612

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G310900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATGCAGAGACTGGGCTTTTGTTCCCTTATTTCCAGAATTCACCTCAAGATTTTCAGCAACTTGAGGAGTTCTGCAGAACCCAGAAGACAAATGCTTCAATGAATAGCTTCGTCGAGGCCTCTATGATATCAGAATATGACCTGGGAGGAGAATGGGATCTATTCAAAGCTCCAGAGCCTATAATTGAAGAGCCGGGCATTGGCCTTGATCCCATGACAGCAACCATTTCAATGATATCTTGTGGGGAAGATGTCACCTGCTCTCAAGGGCTAAAGGTTGCAGACATTGAATCATTTCAAAGTGAGCAGCTTTTGAGTGATGTCTTCTATGACAAGGATCTCTTAGGGAAGGAGGCAATAGGGGCACCACTTTCTGAGGCCCTAGATATCAAAATTCCTATTTTGACAATGGATGCAAATCAAATTCAGGAAAACAAACCAATTCGCGACGTAACATTCCAGAAAAGTGTCAGCTCAGGATGTTTAACCTCAAGGGAGTGGATGCATGGAACTTCAACGAAGCCAAGTTTCCTGGATTTTCCTGGAATGGATTTTGGTGCTGCTTATGGTATTCGGAGGGCATTTAGTGAAGGAGATATTAAGACTCTTGATAACATCAACACAAGCCTCGTCCATTCTTCGCTTGAGCGGCCCATAGTCATCAGCAACTGCACCACTGAGGAACGCAGGGAAAAGCTTTCAAGATACCGCAACAAGAAGACAAAAAGGAACTTTGGAAGGAAAATCAAGTATGCATGCAGGAAGGCTCTTGCAGACAACCAGCCGAGGATCCGTGGAAGATTTGCAAAGACTGAAGAAACTTATGGCAAGAGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

281

Amino Acids

31.62

Weight (kDa)

5.49

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	652
AccII	CGCG	1 cut(s)	450
AciI	CCGC	2 cut(s)	652, 712
AclWI	GGATC	5 cut(s)	168, 206, 348, 787, 800
AcsI	RAATTY	3 cut(s)	40, 396, 426
AcuI	CTGAAG	1 cut(s)	837
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	8 cut(s)	102, 169, 191, 234, 293, 302, 519, 705
AjnI	CCWGG	3 cut(s)	144, 534, 544
AluBI	AGCT	5 cut(s)	111, 173, 313, 477, 700
AluI	AGCT	5 cut(s)	111, 173, 313, 477, 700
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	5 cut(s)	168, 206, 348, 787, 800
AlwNI	CAGNNNCTG	2 cut(s)	14, 672
AoxI	GGCC	4 cut(s)	120, 205, 381, 653
ApeKI	GCWGC	2 cut(s)	310, 563
ApoI	RAATTY	3 cut(s)	40, 396, 426
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	2 cut(s)	110, 297
AspS9I	GGNCC	2 cut(s)	382, 654
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	36, 250
BaeGI	GKGCMC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	792
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	3 cut(s)	95, 319, 728
BbvI	GCAGC	2 cut(s)	322, 550
BciT130I	CCWGG	3 cut(s)	146, 536, 546
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	311, 564, 653
BlsI	GCNGC	3 cut(s)	312, 565, 654
Bme1390I	CCNGG	4 cut(s)	146, 198, 536, 546
BmgT120I	GGNCC	2 cut(s)	382, 654
BmiI	GGNNCC	2 cut(s)	369, 794
BmrFI	CCNGG	4 cut(s)	146, 198, 536, 546
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	406, 495
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	3 cut(s)	95, 319, 728
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	5 cut(s)	33, 86, 252, 478, 668
BpuMI	CCSGG	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	145, 788, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	146, 536, 546
BseDI	CCNNGG	3 cut(s)	145, 788, 796
BseGI	GGATG	3 cut(s)	421, 488, 510
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	369, 492, 672
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	83, 165
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	322, 550
BsgI	GTGCAG	1 cut(s)	658
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	4 cut(s)	122, 207, 383, 655
BshNI	GGYRCC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	4 cut(s)	122, 207, 383, 655
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	160, 211, 340, 792
Bsp68I	TCGCGA	1 cut(s)	450
BspACI	CCGC	2 cut(s)	652, 712
BspANI	GGCC	4 cut(s)	122, 207, 383, 655
BspCNI	CTCAG	3 cut(s)	370, 491, 673
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	369, 794
BspMAI	CTGCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	5 cut(s)	168, 206, 348, 787, 800
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	145, 788, 796
BssMI	GATC	4 cut(s)	160, 211, 340, 792
Bst2UI	CCWGG	3 cut(s)	146, 536, 546
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	760
BstDEI	CTNAG	4 cut(s)	346, 378, 478, 681
BstDSI	CCRYGG	1 cut(s)	796
BstF5I	GGATG	3 cut(s)	421, 488, 510
BstFNI	CGCG	1 cut(s)	450
BstKTI	GATC	4 cut(s)	163, 214, 343, 795
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	4 cut(s)	160, 211, 340, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 652
BstNI	CCWGG	3 cut(s)	146, 536, 546
BstNSI	RCATGY	1 cut(s)	762
BstSCI	CCNGG	4 cut(s)	144, 196, 534, 544
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	322, 550
BstV2I	GAAGAC	3 cut(s)	95, 319, 728
BstX2I	RGATCY	3 cut(s)	160, 340, 792
BstYI	RGATCY	3 cut(s)	160, 340, 792
BsuRI	GGCC	4 cut(s)	122, 207, 383, 655
BtgI	CCRYGG	1 cut(s)	796
BtsCI	GGATG	3 cut(s)	421, 488, 510
BtsIMutI	CAGTG	1 cut(s)	678
BtuMI	TCGCGA	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	760
CaiI	CAGNNNCTG	2 cut(s)	14, 672
Cfr13I	GGNCC	2 cut(s)	382, 654
CviAII	CATG	3 cut(s)	217, 509, 759
DdeI	CTNAG	4 cut(s)	346, 378, 478, 681
DpnI	GATC	4 cut(s)	162, 213, 342, 794
DpnII	GATC	4 cut(s)	160, 211, 340, 792
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	122
Eco32I	GATATC	3 cut(s)	132, 240, 391
Eco57I	CTGAAG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	144, 534, 544
EcoRV	GATATC	3 cut(s)	132, 240, 391
EcoT22I	ATGCAT	2 cut(s)	510, 760
FaeI	CATG	3 cut(s)	220, 512, 762
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	3 cut(s)	216, 508, 758
Fnu4HI	GCNGC	3 cut(s)	311, 564, 653
FokI	GGATG	3 cut(s)	428, 495, 517
Fsp4HI	GCNGC	3 cut(s)	311, 564, 653
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	3 cut(s)	311, 564, 653
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	122, 207, 383, 655
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	3 cut(s)	220, 512, 762
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	2 cut(s)	293, 607
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	36, 250
Hpy188I	TCNGA	3 cut(s)	136, 379, 579
Hpy188III	TCNNGA	9 cut(s)	37, 50, 176, 431, 449, 463, 480, 611, 705
Hpy99I	CGWCG	2 cut(s)	119, 455
HpyAV	CCTTC	4 cut(s)	346, 587, 735, 760
HpyCH4IV	ACGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 652
HpyF3I	CTNAG	4 cut(s)	346, 378, 478, 681
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	220, 512, 762
Kzo9I	GATC	4 cut(s)	160, 211, 340, 792
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	322, 550
LweI	GCATC	2 cut(s)	406, 495
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	256, 454
MalI	GATC	4 cut(s)	162, 213, 342, 794
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	4 cut(s)	160, 211, 340, 792
MboII	GAAGA	8 cut(s)	100, 203, 263, 319, 633, 733, 813, 830
MflI	RGATCY	3 cut(s)	160, 340, 792
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	5 cut(s)	40, 186, 396, 426, 444
MlyI	GAGTC	1 cut(s)	601
Mph1103I	ATGCAT	2 cut(s)	510, 760
MroXI	GAANNNNTTC	2 cut(s)	110, 297
MseI	TTAA	2 cut(s)	488, 603
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	4 cut(s)	146, 198, 536, 546
MvaI	CCWGG	3 cut(s)	146, 536, 546
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	365, 652
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	160, 211, 340, 792
NlaIII	CATG	3 cut(s)	220, 512, 762
NlaIV	GGNNCC	2 cut(s)	369, 794
NmeAIII	GCCGAG	1 cut(s)	813
NmuCI	GTSAC	1 cut(s)	256
NruI	TCGCGA	1 cut(s)	450
NsiI	ATGCAT	2 cut(s)	510, 760
NspI	RCATGY	1 cut(s)	762
PaeI	GCATGC	1 cut(s)	762
PaqCI	CACCTGC	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	186
PdmI	GAANNNNTTC	2 cut(s)	110, 297
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	2 cut(s)	534, 544
PkrI	GCNGC	3 cut(s)	312, 565, 654
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp6I	CCWGG	3 cut(s)	144, 534, 544
PspGI	CCWGG	3 cut(s)	144, 534, 544
PspN4I	GGNNCC	2 cut(s)	369, 794
PspPI	GGNCC	2 cut(s)	382, 654
PstI	CTGCAG	1 cut(s)	80
PstNI	CAGNNNCTG	2 cut(s)	14, 672
PsuI	RGATCY	3 cut(s)	160, 340, 792
RruI	TCGCGA	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	488, 603
SatI	GCNGC	3 cut(s)	311, 564, 653
Sau3AI	GATC	4 cut(s)	160, 211, 340, 792
Sau96I	GGNCC	2 cut(s)	382, 654
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	4 cut(s)	146, 198, 536, 546
SduI	GDGCHC	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	406, 495
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	5 cut(s)	48, 65, 267, 493, 647
SmoI	CTYRAG	5 cut(s)	48, 65, 267, 493, 647
SphI	GCATGC	1 cut(s)	762
Sse9I	AATT	5 cut(s)	40, 186, 396, 426, 444
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	652, 712
SspMI	CTAG	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	4 cut(s)	144, 196, 534, 544
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	117
TasI	AATT	5 cut(s)	40, 186, 396, 426, 444
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	488, 603
Tru9I	TTAA	2 cut(s)	488, 603
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	310, 563
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	685
XapI	RAATTY	3 cut(s)	40, 396, 426
XceI	RCATGY	1 cut(s)	762
XmnI	GAANNNNTTC	2 cut(s)	110, 297
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	2 cut(s)	510, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.