RLG00000026265

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003858
Physical Location & Seq
Reverse (-)
1746669 .. 1750022
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026265

Sequence Viewer

Length: 843 bp
ATGTATGCAGAGACTGGTCTTTTGTTCCCTTATTTCCAGAATCCCCCTCAAGACTTTCAGCAGTTGGAGGAGTTCTGCAGAAACCAGAAATTCAATGCTTCAATGAATAACCTTGTTGAGGCCTCCATGATATCAGAATACGACCTGGGAGGAGATTGGGACCTATTTAAAGCTCCAGAGCCTATCATCGAAGAACCAGTTCTCGGCCTTGATCCCATGACAGCAGCCTCAATGATATCTTGTGGGGAAGATGTCATCTCGTCTCAAGGACTCAAGGCTTCAGACATTGAATCACTTCAAAGTGAACAGCTATTGGATGATGTCTTCTATGACAAGGATATCCTAGAAAAGGATCCAACAGAAACACCACTTTCAGAGGTCCTTGATATCAAAATTCCTGATTTGGGGACAGATGGAAATCAAATTCAAGAAGACAAACCACTTCGTGACATACAATTCCAGAAAAGTGTCAGCTCAGGATGTCTAAGCTCAACGGAGTGGATGCAAGGAGCTGCAACGAAGCCTAATTTTATGGAATTACCTGGAATGGATTTTGCTGCTGCTTATGGGATTCGGAGGGCATTTAGTGAAGGAGATATTAAGACTCTTGGTAGCGGTAACATAAGCCTCGTCCATCCTCCTCTTGAGCGGTCGATTATCATCACCAACTGCACCACTGAGGAACGCAGGGAAAAGCTTTCAAGATATAGGAACAAGAAGACAAAGAGGAACTTCGGCAGGAAAATCAAGTATGCGTGCAGGAAGGCTCTTGCTGACAACCAGCCGAGGATCCGTGGAAGGTTTGCAAAGACTGAAGAATCTATTTGTGCCAAGAGGCAATAA

Protein Analysis

281

Amino Acids

31.58

Weight (kDa)

4.95

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 229 - 271 2.2e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 649
AciI CCGC 2 cut(s) 615, 649
AclWI GGATC 5 cut(s) 206, 347, 360, 784, 797
AcsI RAATTY 3 cut(s) 89, 393, 423
AcuI CTGAAG 2 cut(s) 264, 834
AdeI CACNNNGTG 1 cut(s) 446
AfiI CCNNNNNNNGG 4 cut(s) 118, 203, 349, 404
AgsI TTSAA 6 cut(s) 94, 102, 290, 299, 428, 702
AjnI CCWGG 2 cut(s) 144, 541
AluBI AGCT 6 cut(s) 173, 310, 474, 489, 512, 697
AluI AGCT 6 cut(s) 173, 310, 474, 489, 512, 697
Alw26I GTCTC 2 cut(s) 5, 267
AlwI GGATC 5 cut(s) 206, 347, 360, 784, 797
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 2 cut(s) 120, 205
ApeKI GCWGC 4 cut(s) 224, 512, 557, 560
ApoI RAATTY 3 cut(s) 89, 393, 423
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 2 cut(s) 198, 294
AspS9I GGNCC 2 cut(s) 160, 379
AsuHPI GGTGA 1 cut(s) 655
AvaII GGWCC 2 cut(s) 160, 379
BamHI GGATCC 2 cut(s) 352, 789
BbsI GAAGAC 3 cut(s) 316, 438, 725
BbvI GCAGC 4 cut(s) 236, 499, 544, 547
BccI CCATC 2 cut(s) 407, 642
BciT130I CCWGG 2 cut(s) 146, 543
BcoDI GTCTC 2 cut(s) 5, 267
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 4 cut(s) 225, 513, 558, 561
BlsI GCNGC 4 cut(s) 226, 514, 559, 562
Bme1390I CCNGG 2 cut(s) 146, 543
Bme18I GGWCC 2 cut(s) 160, 379
BmgT120I GGNCC 2 cut(s) 160, 379
BmiI GGNNCC 3 cut(s) 161, 354, 791
BmrFI CCNGG 2 cut(s) 146, 543
BmsI GCATC 1 cut(s) 492
BpiI GAAGAC 3 cut(s) 316, 438, 725
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 475
BpuEI CTTGAG 4 cut(s) 33, 249, 257, 665
BsaBI GATNNNNATC 2 cut(s) 417, 659
BsaJI CCNNGG 3 cut(s) 145, 785, 793
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 203, 349, 404
Bse1I ACTGG 2 cut(s) 19, 197
Bse8I GATNNNNATC 2 cut(s) 417, 659
BseBI CCWGG 2 cut(s) 146, 543
BseDI CCNNGG 3 cut(s) 145, 785, 793
BseGI GGATG 4 cut(s) 322, 485, 507, 634
BseJI GATNNNNATC 2 cut(s) 417, 659
BseLI CCNNNNNNNGG 4 cut(s) 118, 203, 349, 404
BseMII CTCAG 2 cut(s) 489, 669
BseNI ACTGG 2 cut(s) 19, 197
BseRI GAGGAG 3 cut(s) 83, 165, 630
BseXI GCAGC 4 cut(s) 236, 499, 544, 547
BsgI GTGCAG 2 cut(s) 655, 778
Bsh1285I CGRYCG 1 cut(s) 653
BshFI GGCC 2 cut(s) 122, 207
BsiEI CGRYCG 1 cut(s) 653
BslFI GGGAC 2 cut(s) 173, 421
BslI CCNNNNNNNGG 4 cut(s) 118, 203, 349, 404
BsmAI GTCTC 2 cut(s) 5, 267
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 173, 421
BsnI GGCC 2 cut(s) 122, 207
Bsp143I GATC 3 cut(s) 211, 352, 789
BspACI CCGC 2 cut(s) 615, 649
BspANI GGCC 2 cut(s) 122, 207
BspCNI CTCAG 2 cut(s) 488, 670
BspLI GGNNCC 3 cut(s) 161, 354, 791
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 5 cut(s) 206, 347, 360, 784, 797
BsrBI CCGCTC 1 cut(s) 649
BsrI ACTGG 2 cut(s) 19, 197
BssECI CCNNGG 3 cut(s) 145, 785, 793
BssMI GATC 3 cut(s) 211, 352, 789
Bst2UI CCWGG 2 cut(s) 146, 543
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 3 cut(s) 475, 485, 678
BstDSI CCRYGG 1 cut(s) 793
BstENI CCTNNNNNAGG 2 cut(s) 116, 347
BstF5I GGATG 4 cut(s) 322, 485, 507, 634
BstKTI GATC 3 cut(s) 214, 355, 792
BstMAI GTCTC 2 cut(s) 5, 267
BstMBI GATC 3 cut(s) 211, 352, 789
BstMCI CGRYCG 1 cut(s) 653
BstNI CCWGG 2 cut(s) 146, 543
BstSCI CCNGG 2 cut(s) 144, 541
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 4 cut(s) 236, 499, 544, 547
BstV2I GAAGAC 3 cut(s) 316, 438, 725
BstX2I RGATCY 2 cut(s) 352, 789
BstYI RGATCY 2 cut(s) 352, 789
BsuRI GGCC 2 cut(s) 122, 207
BtgI CCRYGG 1 cut(s) 793
BtsCI GGATG 4 cut(s) 322, 485, 507, 634
BtsIMutI CAGTG 1 cut(s) 675
Cac8I GCNNGC 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 160, 379
CviAII CATG 2 cut(s) 127, 217
DdeI CTNAG 3 cut(s) 475, 485, 678
DpnI GATC 3 cut(s) 213, 354, 791
DpnII GATC 3 cut(s) 211, 352, 789
DraI TTTAAA 1 cut(s) 169
DraIII CACNNNGTG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 122
Eco32I GATATC 4 cut(s) 132, 237, 340, 388
Eco47I GGWCC 2 cut(s) 160, 379
Eco57I CTGAAG 2 cut(s) 264, 834
EcoNI CCTNNNNNAGG 2 cut(s) 116, 347
EcoO109I RGGNCCY 2 cut(s) 160, 379
EcoRII CCWGG 2 cut(s) 144, 541
EcoRV GATATC 4 cut(s) 132, 237, 340, 388
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 2 cut(s) 130, 220
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 173, 421
FatI CATG 2 cut(s) 126, 216
Fnu4HI GCNGC 4 cut(s) 225, 513, 558, 561
FokI GGATG 4 cut(s) 329, 492, 514, 621
Fsp4HI GCNGC 4 cut(s) 225, 513, 558, 561
FspBI CTAG 1 cut(s) 344
GluI GCNGC 4 cut(s) 225, 513, 558, 561
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 122, 207
Hin1II CATG 2 cut(s) 130, 220
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 6 cut(s) 40, 270, 290, 571, 604, 818
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 136, 283, 376, 576
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 584, 757, 792
HpyCH4V TGCA 7 cut(s) 8, 78, 505, 515, 672, 759, 806
HpyF3I CTNAG 3 cut(s) 475, 485, 678
Hsp92II CATG 2 cut(s) 130, 220
Kzo9I GATC 3 cut(s) 211, 352, 789
LmnI GCTCC 2 cut(s) 178, 509
Lsp1109I GCAGC 4 cut(s) 236, 499, 544, 547
LweI GCATC 1 cut(s) 492
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 2 cut(s) 446, 617
MalI GATC 3 cut(s) 213, 354, 791
MbiI CCGCTC 1 cut(s) 649
MboI GATC 3 cut(s) 211, 352, 789
MboII GAAGA 6 cut(s) 203, 260, 316, 443, 730, 827
MflI RGATCY 2 cut(s) 352, 789
MluCI AATT 6 cut(s) 89, 393, 423, 455, 526, 536
MlyI GAGTC 2 cut(s) 264, 598
MmeI TCCRAC 2 cut(s) 45, 380
MroXI GAANNNNTTC 2 cut(s) 198, 294
MseI TTAA 2 cut(s) 168, 600
MspR9I CCNGG 2 cut(s) 146, 543
MvaI CCWGG 2 cut(s) 146, 543
NdeII GATC 3 cut(s) 211, 352, 789
NlaIII CATG 2 cut(s) 130, 220
NlaIV GGNNCC 3 cut(s) 161, 354, 791
NmeAIII GCCGAG 2 cut(s) 183, 810
NmuCI GTSAC 1 cut(s) 446
PceI AGGCCT 1 cut(s) 122
PdmI GAANNNNTTC 2 cut(s) 198, 294
PfeI GAWTC 4 cut(s) 40, 290, 571, 818
PkrI GCNGC 4 cut(s) 226, 514, 559, 562
PleI GAGTC 2 cut(s) 264, 598
PpsI GAGTC 2 cut(s) 264, 598
PpuMI RGGWCCY 2 cut(s) 160, 379
Psp5II RGGWCCY 2 cut(s) 160, 379
Psp6I CCWGG 2 cut(s) 144, 541
PspGI CCWGG 2 cut(s) 144, 541
PspN4I GGNNCC 3 cut(s) 161, 354, 791
PspPI GGNCC 2 cut(s) 160, 379
PspPPI RGGWCCY 2 cut(s) 160, 379
PstI CTGCAG 1 cut(s) 80
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 2 cut(s) 352, 789
SaqAI TTAA 2 cut(s) 168, 600
SatI GCNGC 4 cut(s) 225, 513, 558, 561
Sau3AI GATC 3 cut(s) 211, 352, 789
Sau96I GGNCC 2 cut(s) 160, 379
SchI GAGTC 2 cut(s) 264, 598
ScrFI CCNGG 2 cut(s) 146, 543
SfaNI GCATC 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 2 cut(s) 160, 379
SmlI CTYRAG 4 cut(s) 48, 264, 272, 644
SmoI CTYRAG 4 cut(s) 48, 264, 272, 644
Sse9I AATT 6 cut(s) 89, 393, 423, 455, 526, 536
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 2 cut(s) 615, 649
SspMI CTAG 1 cut(s) 344
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 144, 541
TaqI TCGA 2 cut(s) 189, 653
TasI AATT 6 cut(s) 89, 393, 423, 455, 526, 536
TfiI GAWTC 4 cut(s) 40, 290, 571, 818
Tru1I TTAA 2 cut(s) 168, 600
Tru9I TTAA 2 cut(s) 168, 600
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 4 cut(s) 224, 512, 557, 560
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 2 cut(s) 509, 782
TspRI CASTG 1 cut(s) 682
VpaK11BI GGWCC 2 cut(s) 160, 379
XagI CCTNNNNNAGG 2 cut(s) 116, 347
XapI RAATTY 3 cut(s) 89, 393, 423
XmnI GAANNNNTTC 2 cut(s) 198, 294
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.