AT4G27920

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007683
Physical Location & Seq
Forward (+)
13901142 .. 13902000
859 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27920.1

Sequence Viewer

Length: 552 bp
ATGAACGGTGACGAAACAAAGAAGGTGGAGAGCGAGTACATCAAGAAACACCATAGACACGAGCTTGTAGAGTCTCAATGTAGCTCTACGCTCGTTAAGCACATCAAAGCTCCTCTGCATCTCGTGTGGTCAATTGTGAGGAGATTCGATGAACCACAAAAATACAAACCATTTATCAGTAGGTGTGTGGTACAAGGTAAGAAGCTGGAGGTTGGTAGCGTAAGAGAAGTGGATTTGAAATCTGGATTACCAGCTACTAAAAGCACTGAGGTATTAGAGATTCTTGACGACAATGAGCATATTCTCGGCATCAGAATAGTTGGTGGTGATCATAGACTCAAGAATTATTCTTCAACCATTTCGTTACATTCGGAGACGATAGACGGAAAAACAGGGACATTGGCTATAGAATCGTTCGTGGTGGATGTGCCGGAAGGTAACACAAAGGAGGAGACATGCTTCTTCGTGGAGGCTTTGATTCAATGCAATCTCAATTCTTTAGCAGATGTTACCGAGCGTCTACAAGCAGAATCTATGGAGAAGAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

183

Amino Acids

20.64

Weight (kDa)

6.08

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 27 - 171 4.7e-17 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 520
AfaI GTAC 2 cut(s) 38, 192
AgsI TTSAA 3 cut(s) 238, 354, 482
AluBI AGCT 5 cut(s) 64, 84, 110, 205, 254
AluI AGCT 5 cut(s) 64, 84, 110, 205, 254
Alw26I GTCTC 3 cut(s) 78, 368, 446
AsuHPI GGTGA 2 cut(s) 20, 338
BauI CACGAG 2 cut(s) 59, 122
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 78, 368, 446
BfmI CTRYAG 1 cut(s) 405
BmsI GCATC 2 cut(s) 127, 318
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
BseGI GGATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 3 cut(s) 102, 154, 464
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 409
BsmAI GTCTC 3 cut(s) 78, 368, 446
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 409
Bsp143I GATC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 259
BssMI GATC 1 cut(s) 328
BssSI CACGAG 2 cut(s) 59, 122
Bst2BI CACGAG 2 cut(s) 59, 122
Bst4CI ACNGT 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 3 cut(s) 78, 368, 446
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 459
BstSFI CTRYAG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 264
CseI GACGC 1 cut(s) 506
Csp6I GTAC 2 cut(s) 37, 191
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 456
CviJI RGCY 7 cut(s) 64, 84, 110, 205, 254, 404, 473
CviKI_1 RGCY 7 cut(s) 64, 84, 110, 205, 254, 404, 473
CviQI GTAC 2 cut(s) 37, 191
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 1 cut(s) 459
FaiI YATR 7 cut(s) 54, 300, 333, 407, 457, 536, 550
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 455
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 520
FokI GGATG 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 227
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 506
Hin1II CATG 1 cut(s) 459
HinfI GANTC 7 cut(s) 71, 144, 280, 336, 410, 478, 530
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 20, 338
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 2 cut(s) 314, 373
Hpy188III TCNNGA 4 cut(s) 43, 243, 284, 340
Hpy8I GTNNAC 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 16, 428
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 118, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 191, 228, 264, 378, 444
LweI GCATC 2 cut(s) 127, 318
MaeIII GTNAC 4 cut(s) 8, 363, 437, 508
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 2 cut(s) 342, 454
MfeI CAATTG 1 cut(s) 132
MluCI AATT 3 cut(s) 132, 343, 493
MlyI GAGTC 2 cut(s) 80, 330
MnlI CCTC 6 cut(s) 123, 132, 202, 262, 442, 463
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 1 cut(s) 328
NlaIII CATG 1 cut(s) 459
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 459
PfeI GAWTC 5 cut(s) 144, 280, 410, 478, 530
PleI GAGTC 2 cut(s) 79, 330
PpsI GAGTC 2 cut(s) 79, 330
RsaI GTAC 2 cut(s) 38, 192
RsaNI GTAC 2 cut(s) 37, 191
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 1 cut(s) 328
SchI GAGTC 2 cut(s) 80, 330
SfaNI GCATC 2 cut(s) 127, 318
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 132, 343, 493
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 147
TasI AATT 3 cut(s) 132, 343, 493
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 5 cut(s) 144, 280, 410, 478, 530
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 17, 165
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 271
XceI RCATGY 1 cut(s) 459
XmiI GTMKAC 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.