FvH4_3g16470

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007683
Physical Location & Seq
Forward (+)
10403496 .. 10405701
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16470.t1

Sequence Viewer

Length: 222 bp
ATGAACTACTCTTCAATCATTTCCCTCCATCCAGAAATCGTTGATGGAAAACCAGAGACTCTGGTGATCGAGTCATTTGTAGTTGATGTGCCTGAGGGGAACACCAAGGATGAAACCTGCTACTTTGTTGAAGCTTTGATTCAATGCAATCTCAAATCACTTTGTGATGTCTCAGAGAGGCTTGCAGTGCAGGACCACACTGAACCAATAGATCGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

74

Amino Acids

8.21

Weight (kDa)

4.29

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 15, 131, 143
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 50, 175
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 193
AxyI CCTNAGG 1 cut(s) 93
BccI CCATC 2 cut(s) 36, 38
BcoDI GTCTC 2 cut(s) 50, 175
BfuAI ACCTGC 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 105
Bse21I CCTNAGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 28, 115
BseMII CTCAG 2 cut(s) 84, 186
BsgI GTGCAG 1 cut(s) 209
BsmAI GTCTC 2 cut(s) 50, 175
Bsp143I GATC 2 cut(s) 66, 211
BspCNI CTCAG 2 cut(s) 85, 185
BspMI ACCTGC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 66, 211
BssT1I CCWWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 93, 172
BstF5I GGATG 2 cut(s) 28, 115
BstKTI GATC 2 cut(s) 69, 214
BstMAI GTCTC 2 cut(s) 50, 175
BstMBI GATC 2 cut(s) 66, 211
BstMWI GCNNNNNNNGC 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 28, 115
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 198
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 193
CviJI RGCY 3 cut(s) 134, 181, 217
CviKI_1 RGCY 3 cut(s) 134, 181, 217
DdeI CTNAG 2 cut(s) 93, 172
DpnI GATC 2 cut(s) 68, 213
DpnII GATC 2 cut(s) 66, 211
DraIII CACNNNGTG 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 193
Eco81I CCTNAGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FokI GGATG 2 cut(s) 15, 122
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 3 cut(s) 58, 71, 139
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 147, 185, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 93, 172
Kzo9I GATC 2 cut(s) 66, 211
LpnPI CCDG 6 cut(s) 45, 47, 66, 105, 130, 176
MalI GATC 2 cut(s) 68, 213
MboI GATC 2 cut(s) 66, 211
MboII GAAGA 1 cut(s) 3
MlyI GAGTC 2 cut(s) 52, 80
MnlI CCTC 3 cut(s) 35, 88, 171
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 2 cut(s) 66, 211
PfeI GAWTC 1 cut(s) 139
PleI GAGTC 2 cut(s) 52, 79
PpsI GAGTC 2 cut(s) 52, 79
PspPI GGNCC 1 cut(s) 193
Sau3AI GATC 2 cut(s) 66, 211
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 2 cut(s) 52, 80
SetI ASST 2 cut(s) 119, 136
SgeI CNNG 9 cut(s) 44, 65, 74, 82, 104, 118, 129, 194, 203
SinI GGWCC 1 cut(s) 193
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 1 cut(s) 69
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 2 cut(s) 192, 205
TspDTI ATGAA 2 cut(s) 17, 126
TspRI CASTG 2 cut(s) 192, 205
VpaK11BI GGWCC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.