MD01G1216100.v1.1

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007683
Physical Location & Seq
Reverse (-)
30907760 .. 30910808
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1216100.v1.1.491

Sequence Viewer

Length: 597 bp
ATGAATGGGAATAGGAATGGAGGCGGAGGAGGCGGCGGCGGCGGAGGAGGTGGTTTTGGCGGGATAGTGAGCGACTACATTCGGAGGCACCACAAGCACGACCTTAACGACCATCAGTGTACATCTACTCTCGTCCGGCACATCAAAGCCCCTGTCCATCTTGTTTGGTCGTTGGTAAGACGATTTGATCAACCGCAAAAGTATAAGCCATTTGTCAGCAGGTGTGTGGTGCAGGGAAATCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACAACAAGTACTGAGAGATTGGAACTTCTTGACGATGACGAGCATATTCTTAGCATTAAAATAATTGGTGGGGATCACAGACTCAGGAACTACTCTTCAATCATCTCCCTCCATCCAGAGATAATTGACGGAAGACCGGGGACTCTGGTGATTGAGTCATTTGTAGTTGACATTCCTGAAGGGAACACCAAGGATGAGACCTGCTACTTTGTTGAAGCCTTGATCCAGTGCAATCTCAAATCTCTTTCTGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

199

Amino Acids

21.8

Weight (kDa)

5.97

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 40 - 184 5.7e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
AatII GACGTC 1 cut(s) 546
Acc36I ACCTGC 2 cut(s) 210, 500
AccB1I GGYRCC 1 cut(s) 87
AciI CCGC 8 cut(s) 24, 33, 36, 39, 42, 60, 194, 560
AclWI GGATC 2 cut(s) 372, 508
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 3 cut(s) 121, 301, 564
AgsI TTSAA 2 cut(s) 390, 506
Alw26I GTCTC 3 cut(s) 260, 482, 550
AlwI GGATC 2 cut(s) 372, 508
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspS9I GGNCC 1 cut(s) 568
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 430
BccI CCATC 3 cut(s) 120, 165, 411
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 3 cut(s) 260, 482, 550
BfuAI ACCTGC 2 cut(s) 210, 500
BisI GCNGC 3 cut(s) 34, 37, 40
BlsI GCNGC 3 cut(s) 35, 38, 41
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 428, 480
Bse1I ACTGG 1 cut(s) 517
BseDI CCNNGG 2 cut(s) 428, 480
BseGI GGATG 2 cut(s) 403, 490
BseMII CTCAG 5 cut(s) 271, 294, 388, 561, 567
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 2 cut(s) 42, 60
BsgI GTGCAG 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 87
BsiSI CCGG 2 cut(s) 136, 428
BslFI GGGAC 1 cut(s) 445
BsmAI GTCTC 3 cut(s) 260, 482, 550
BsmBI CGTCTC 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 482
Bsp1407I TGTACA 1 cut(s) 119
Bsp143I GATC 4 cut(s) 187, 364, 513, 586
BspACI CCGC 8 cut(s) 24, 33, 36, 39, 42, 60, 194, 560
BspCNI CTCAG 5 cut(s) 270, 295, 387, 560, 568
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 2 cut(s) 210, 500
BspPI GGATC 2 cut(s) 372, 508
BspT107I GGYRCC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 428, 480
BssMI GATC 4 cut(s) 187, 364, 513, 586
BssNI GRCGYC 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 543
BstAUI TGTACA 1 cut(s) 119
BstDEI CTNAG 6 cut(s) 257, 303, 341, 374, 547, 576
BstF5I GGATG 2 cut(s) 403, 490
BstKTI GATC 4 cut(s) 190, 367, 516, 589
BstMAI GTCTC 3 cut(s) 260, 482, 550
BstMBI GATC 4 cut(s) 187, 364, 513, 586
BstMWI GCNNNNNNNGC 3 cut(s) 30, 39, 94
BstSCI CCNGG 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 403, 490
BtsIMutI CAGTG 2 cut(s) 122, 524
BveI ACCTGC 2 cut(s) 210, 500
Cfr13I GGNCC 1 cut(s) 568
Csp6I GTAC 3 cut(s) 120, 300, 563
CviJI RGCY 6 cut(s) 149, 208, 283, 509, 580, 592
CviKI_1 RGCY 6 cut(s) 149, 208, 283, 509, 580, 592
CviQI GTAC 3 cut(s) 120, 300, 563
DdeI CTNAG 6 cut(s) 257, 303, 341, 374, 547, 576
DpnI GATC 4 cut(s) 189, 366, 515, 588
DpnII GATC 4 cut(s) 187, 364, 513, 586
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
EciI GGCGGA 2 cut(s) 39, 57
Eco130I CCWWGG 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 550
FaiI YATR 2 cut(s) 204, 336
FaqI GGGAC 1 cut(s) 445
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 34, 37, 40
FokI GGATG 2 cut(s) 390, 497
Fsp4HI GCNGC 3 cut(s) 34, 37, 40
GluI GCNGC 3 cut(s) 34, 37, 40
HapII CCGG 2 cut(s) 136, 428
Hin1I GRCGYC 1 cut(s) 543
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 3 cut(s) 372, 433, 446
HpaII CCGG 2 cut(s) 136, 428
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 2 cut(s) 120, 460
Hpy188I TCNGA 5 cut(s) 84, 260, 541, 550, 596
Hpy188III TCNNGA 5 cut(s) 242, 320, 376, 407, 467
Hpy8I GTNNAC 2 cut(s) 120, 460
HpyAV CCTTC 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 2 cut(s) 232, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 39, 94
HpyF3I CTNAG 6 cut(s) 257, 303, 341, 374, 547, 576
HpySE526I ACGT 1 cut(s) 543
Hsp92I GRCGYC 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 4 cut(s) 187, 364, 513, 586
MaeII ACGT 1 cut(s) 543
MalI GATC 4 cut(s) 189, 366, 515, 588
MboI GATC 4 cut(s) 187, 364, 513, 586
MboII GAAGA 2 cut(s) 378, 435
MfeI CAATTG 1 cut(s) 582
MluCI AATT 3 cut(s) 354, 414, 582
MlyI GAGTC 3 cut(s) 366, 427, 455
MnlI CCTC 7 cut(s) 14, 20, 23, 38, 41, 78, 410
MseI TTAA 3 cut(s) 105, 273, 348
MspI CCGG 2 cut(s) 136, 428
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 30, 39, 94
NciI CCSGG 1 cut(s) 429
NdeII GATC 4 cut(s) 187, 364, 513, 586
NlaIV GGNNCC 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PkrI GCNGC 3 cut(s) 35, 38, 41
PleI GAGTC 3 cut(s) 366, 427, 454
PpsI GAGTC 3 cut(s) 366, 427, 454
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 568
RsaI GTAC 3 cut(s) 121, 301, 564
RsaNI GTAC 3 cut(s) 120, 300, 563
SaqAI TTAA 3 cut(s) 105, 273, 348
SatI GCNGC 3 cut(s) 34, 37, 40
Sau3AI GATC 4 cut(s) 187, 364, 513, 586
Sau96I GGNCC 1 cut(s) 568
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 3 cut(s) 366, 427, 455
ScrFI CCNGG 1 cut(s) 429
SetI ASST 5 cut(s) 52, 105, 224, 494, 546
SinI GGWCC 1 cut(s) 568
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 354, 414, 582
SsiI CCGC 8 cut(s) 24, 33, 36, 39, 42, 60, 194, 560
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 480
TaiI ACGT 1 cut(s) 546
TasI AATT 3 cut(s) 354, 414, 582
TatI WGTACW 2 cut(s) 119, 299
TauI GCSGC 3 cut(s) 36, 39, 42
Tru1I TTAA 3 cut(s) 105, 273, 348
Tru9I TTAA 3 cut(s) 105, 273, 348
TscAI CASTG 2 cut(s) 122, 524
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 122, 524
VpaK11BI GGWCC 1 cut(s) 568
ZraI GACGTC 1 cut(s) 544
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.