MD07G1286000.v1.1

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0007683
Physical Location & Seq
Reverse (-)
34791997 .. 34794572
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1286000.v1.1.491

Sequence Viewer

Length: 615 bp
ATGATGAATGGGAATAAGAATGGAGGCGGAGGGGGCGGAGGGGGCGGAGGAGGCGGCGGAGGAGGAGTGGGGTTTGGCGGGATAGTGAGCGACTACATTCGGAGGCACCACAGGCACGACCTTAACGACCATCAGTGTACATCTACTCTCGTCCGGTACATCAAAGCCCCTGTCCATCTTGTTTGGTCGTTGGTAAGACGATTTGATCAGCCACAAAAGTATAAACCATTTGTCAGCAGGTGTGTGGTGCAGGGGAACCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACTACAAGTACTGAAAGATTGGAACTTCTTGACGACGAGGAGCATATTCTTAGCATTAAAATAATTGGTGGGGATCACAGACTTAGGAACTACTCTTCAATCATCTCCCTCCATCCAGAGATCATTGATGGAAGACCGGGGACTCTGGTGATTGAGTCATTTGTAGTTGACATTCCTGAAGGGAACACCAAGGATGAGACCTGCTACTTTGTCGAAGCCTTGATCCAGTGCAATCTCAAATCACTTTCAGACGTCTCAGAGCGACTTGCGGTACAGGACCGAACTGAGCCAATTGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

205

Amino Acids

22.33

Weight (kDa)

6.06

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 47 - 190 2.1e-18 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 228
AatII GACGTC 1 cut(s) 564
Acc36I ACCTGC 2 cut(s) 228, 518
AccB1I GGYRCC 1 cut(s) 105
AciI CCGC 7 cut(s) 27, 36, 45, 54, 57, 78, 578
AclWI GGATC 2 cut(s) 390, 526
AcuI CTGAAG 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 4 cut(s) 139, 158, 319, 582
AgsI TTSAA 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 278, 500, 568
AlwI GGATC 2 cut(s) 390, 526
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AspS9I GGNCC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 448
BccI CCATC 4 cut(s) 138, 183, 429, 431
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 278, 500, 568
BfuAI ACCTGC 2 cut(s) 228, 518
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 2 cut(s) 107, 257
BmrFI CCNGG 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 446, 498
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse1I ACTGG 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 446, 498
BseGI GGATG 2 cut(s) 421, 508
BseMII CTCAG 3 cut(s) 289, 579, 585
BseNI ACTGG 1 cut(s) 535
BseRI GAGGAG 4 cut(s) 63, 75, 78, 362
BsgI GTGCAG 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 154, 446
BslFI GGGAC 1 cut(s) 463
BsmAI GTCTC 3 cut(s) 278, 500, 568
BsmBI CGTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 463
Bso31I GGTCTC 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 5 cut(s) 205, 382, 429, 531, 604
BspACI CCGC 7 cut(s) 27, 36, 45, 54, 57, 78, 578
BspCNI CTCAG 3 cut(s) 288, 578, 586
BspLI GGNNCC 2 cut(s) 107, 257
BspMI ACCTGC 2 cut(s) 228, 518
BspPI GGATC 2 cut(s) 390, 526
BspT107I GGYRCC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 137
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 446, 498
BssMI GATC 5 cut(s) 205, 382, 429, 531, 604
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 409
BstACI GRCGYC 1 cut(s) 561
BstAUI TGTACA 1 cut(s) 137
BstDEI CTNAG 5 cut(s) 275, 359, 392, 565, 594
BstF5I GGATG 2 cut(s) 421, 508
BstKTI GATC 5 cut(s) 208, 385, 432, 534, 607
BstMAI GTCTC 3 cut(s) 278, 500, 568
BstMBI GATC 5 cut(s) 205, 382, 429, 531, 604
BstMWI GCNNNNNNNGC 4 cut(s) 33, 42, 51, 112
BstSCI CCNGG 1 cut(s) 445
BstV2I GAAGAC 1 cut(s) 448
BtsCI GGATG 2 cut(s) 421, 508
BtsIMutI CAGTG 2 cut(s) 140, 542
BveI ACCTGC 2 cut(s) 228, 518
Cfr13I GGNCC 1 cut(s) 586
Csp6I GTAC 4 cut(s) 138, 157, 318, 581
CviJI RGCY 6 cut(s) 167, 211, 301, 527, 598, 610
CviKI_1 RGCY 6 cut(s) 167, 211, 301, 527, 598, 610
CviQI GTAC 4 cut(s) 138, 157, 318, 581
DdeI CTNAG 5 cut(s) 275, 359, 392, 565, 594
DpnI GATC 5 cut(s) 207, 384, 431, 533, 606
DpnII GATC 5 cut(s) 205, 382, 429, 531, 604
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
EciI GGCGGA 4 cut(s) 42, 51, 60, 72
Eco130I CCWWGG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 568
FaiI YATR 2 cut(s) 222, 354
FaqI GGGAC 1 cut(s) 463
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 408, 515
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
HapII CCGG 2 cut(s) 154, 446
Hin1I GRCGYC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 2 cut(s) 451, 464
HpaII CCGG 2 cut(s) 154, 446
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 2 cut(s) 138, 478
Hpy188I TCNGA 5 cut(s) 102, 278, 559, 568, 614
Hpy188III TCNNGA 3 cut(s) 338, 425, 485
Hpy8I GTNNAC 2 cut(s) 138, 478
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 2 cut(s) 250, 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 42, 51, 112
HpyF3I CTNAG 5 cut(s) 275, 359, 392, 565, 594
HpySE526I ACGT 1 cut(s) 561
Hsp92I GRCGYC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 5 cut(s) 205, 382, 429, 531, 604
LmnI GCTCC 1 cut(s) 349
MaeII ACGT 1 cut(s) 561
MalI GATC 5 cut(s) 207, 384, 431, 533, 606
MboI GATC 5 cut(s) 205, 382, 429, 531, 604
MboII GAAGA 2 cut(s) 396, 453
MfeI CAATTG 1 cut(s) 600
MluCI AATT 2 cut(s) 372, 600
MlyI GAGTC 2 cut(s) 445, 473
MseI TTAA 3 cut(s) 123, 291, 366
MspI CCGG 2 cut(s) 154, 446
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 1 cut(s) 600
MwoI GCNNNNNNNGC 4 cut(s) 33, 42, 51, 112
NciI CCSGG 1 cut(s) 447
NdeII GATC 5 cut(s) 205, 382, 429, 531, 604
NlaIV GGNNCC 2 cut(s) 107, 257
PaqCI CACCTGC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 2 cut(s) 445, 472
PpsI GAGTC 2 cut(s) 445, 472
PspN4I GGNNCC 2 cut(s) 107, 257
PspPI GGNCC 1 cut(s) 586
RsaI GTAC 4 cut(s) 139, 158, 319, 582
RsaNI GTAC 4 cut(s) 138, 157, 318, 581
SaqAI TTAA 3 cut(s) 123, 291, 366
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 5 cut(s) 205, 382, 429, 531, 604
Sau96I GGNCC 1 cut(s) 586
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 2 cut(s) 445, 473
ScrFI CCNGG 1 cut(s) 447
SetI ASST 5 cut(s) 123, 242, 261, 512, 564
SinI GGWCC 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 2 cut(s) 372, 600
SsiI CCGC 7 cut(s) 27, 36, 45, 54, 57, 78, 578
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 498
TaiI ACGT 1 cut(s) 564
TaqI TCGA 1 cut(s) 522
TaqII GACCGA 1 cut(s) 603
TasI AATT 2 cut(s) 372, 600
TatI WGTACW 2 cut(s) 137, 317
TauI GCSGC 1 cut(s) 57
Tru1I TTAA 3 cut(s) 123, 291, 366
Tru9I TTAA 3 cut(s) 123, 291, 366
TscAI CASTG 2 cut(s) 140, 542
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 2 cut(s) 140, 542
VpaK11BI GGWCC 1 cut(s) 586
ZraI GACGTC 1 cut(s) 562
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.