Rw1G038600

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007683
Physical Location & Seq
Reverse (-)
66125406 .. 66127015
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038600.1

Sequence Viewer

Length: 573 bp
ATGAATGGGAGTAATAAGAATGGAGGAGGAGGAGGAGGAGGTGCTAATGAGTACATTAGGAGGCACCATAGGCACGAGCTGAAGGATCATCAGTGTAGCTCTACGCTCGTCAGGCACATCAAGGCCCCTGTTCACCTTGTTTGGTCATTGGTAAGACGGTTTGATCAACCCCAAAAGTATAAGCCATTCGTGAGCAGGTGTGTTGTGCAGGGAAATCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACCACTAGTACTGAGAGGTTGGAGCTTCTTGATGATGACGAGCATCTTCTTAGCATTAAAATAATCGGAGGAGATCACAGACTTAGGAACTACTCTTCAATCATTTCCCTCCATCCAGAGATCATTGATGGAAGACCAGGGACTGTGGTGATCGAGTCATTTGTAGTTGATGTGCCCGAGGGGAATACCAAGGATGAAACCTGCTACTTTGTAGAAGCTTTGATTCAGTGCAATCTCAAATCACTTTGTGATGTCTCAGAGAGACTTGCGGTGCAGGACCACACTGAGCCAATAGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

190

Amino Acids

21.26

Weight (kDa)

6.19

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 32 - 174 1.8e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
Acc36I ACCTGC 2 cut(s) 186, 476
AccB1I GGYRCC 1 cut(s) 63
AciI CCGC 1 cut(s) 536
AclWI GGATC 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 2 cut(s) 53, 277
AgsI TTSAA 1 cut(s) 366
AhlI ACTAGT 1 cut(s) 272
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 79, 99, 292, 485
AluI AGCT 4 cut(s) 79, 99, 292, 485
Alw26I GTCTC 3 cut(s) 236, 523, 526
AlwI GGATC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 124, 544
AsuHPI GGTGA 2 cut(s) 125, 427
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 63
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 406
BccI CCATC 2 cut(s) 387, 389
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 236, 523, 526
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 2 cut(s) 186, 476
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 124, 544
BmiI GGNNCC 2 cut(s) 65, 126
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 404, 444, 456
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 404, 444, 456
BseGI GGATG 2 cut(s) 379, 466
BseMII CTCAG 4 cut(s) 247, 270, 537, 543
BseRI GAGGAG 6 cut(s) 39, 42, 45, 48, 51, 351
BseSI GKGCMC 1 cut(s) 444
BsgI GTGCAG 2 cut(s) 227, 560
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 236, 523, 526
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 6 cut(s) 85, 163, 340, 387, 417, 562
BspACI CCGC 1 cut(s) 536
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 4 cut(s) 246, 271, 536, 544
BspLI GGNNCC 2 cut(s) 65, 126
BspMI ACCTGC 2 cut(s) 186, 476
BspPI GGATC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 404, 444, 456
BssMI GATC 6 cut(s) 85, 163, 340, 387, 417, 562
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 159, 412
Bst6I CTCTTC 1 cut(s) 367
BstDEI CTNAG 6 cut(s) 233, 279, 317, 350, 523, 552
BstF5I GGATG 2 cut(s) 379, 466
BstKTI GATC 6 cut(s) 88, 166, 343, 390, 420, 565
BstMAI GTCTC 3 cut(s) 236, 523, 526
BstMBI GATC 6 cut(s) 85, 163, 340, 387, 417, 562
BstMWI GCNNNNNNNGC 2 cut(s) 70, 112
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 379, 466
BtsIMutI CAGTG 3 cut(s) 98, 500, 549
BveI ACCTGC 2 cut(s) 186, 476
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 124, 544
Csp6I GTAC 2 cut(s) 52, 276
CviJI RGCY 9 cut(s) 79, 99, 125, 184, 259, 292, 485, 556, 568
CviKI_1 RGCY 9 cut(s) 79, 99, 125, 184, 259, 292, 485, 556, 568
CviQI GTAC 2 cut(s) 52, 276
DdeI CTNAG 6 cut(s) 233, 279, 317, 350, 523, 552
DpnI GATC 6 cut(s) 87, 165, 342, 389, 419, 564
DpnII GATC 6 cut(s) 85, 163, 340, 387, 417, 562
DraIII CACNNNGTG 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaiI YATR 2 cut(s) 69, 180
FaqI GGGAC 1 cut(s) 421
FbaI TGATCA 1 cut(s) 163
FokI GGATG 2 cut(s) 366, 473
FspBI CTAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 2 cut(s) 422, 490
HphI GGTGA 2 cut(s) 125, 427
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 4 cut(s) 236, 335, 526, 572
Hpy188III TCNNGA 4 cut(s) 190, 218, 296, 383
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 159, 412
HpyCH4V TGCA 3 cut(s) 208, 498, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 112
HpyF3I CTNAG 6 cut(s) 233, 279, 317, 350, 523, 552
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 85, 163, 340, 387, 417, 562
LmnI GCTCC 1 cut(s) 289
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 273
MalI GATC 6 cut(s) 87, 165, 342, 389, 419, 564
MboI GATC 6 cut(s) 85, 163, 340, 387, 417, 562
MboII GAAGA 3 cut(s) 305, 354, 411
MhlI GDGCHC 1 cut(s) 444
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 267
MseI TTAA 2 cut(s) 249, 324
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 70, 112
NdeII GATC 6 cut(s) 85, 163, 340, 387, 417, 562
NlaIV GGNNCC 2 cut(s) 65, 126
PaqCI CACCTGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 490
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 65, 126
PspPI GGNCC 2 cut(s) 124, 544
PstNI CAGNNNCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 53, 277
RsaNI GTAC 2 cut(s) 52, 276
SaqAI TTAA 2 cut(s) 249, 324
Sau3AI GATC 6 cut(s) 85, 163, 340, 387, 417, 562
Sau96I GGNCC 2 cut(s) 124, 544
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 444
SetI ASST 9 cut(s) 43, 81, 101, 138, 200, 287, 294, 470, 487
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 272
SsiI CCGC 1 cut(s) 536
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 159, 412
TaqI TCGA 1 cut(s) 420
TatI WGTACW 2 cut(s) 51, 275
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 2 cut(s) 249, 324
Tru9I TTAA 2 cut(s) 249, 324
TscAI CASTG 3 cut(s) 98, 500, 556
TspDTI ATGAA 2 cut(s) 17, 477
TspRI CASTG 3 cut(s) 98, 500, 556
VpaK11BI GGWCC 1 cut(s) 544
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.