Rmu_co8484759.1_g000002

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8484759.1
OG0007683
Physical Location & Seq
Reverse (-)
1548 .. 2333
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8484759.1_g000002.1.cds

Sequence Viewer

Length: 363 bp
ggaaatcttgagattggaagtctcagagaagttgatgttaagtctgggcttcctgccaccactagtactgagaggttggagcttcttgatgatgatgagcatcttcttagcattaaaataatcggaggagatcacagacttaggaactactcttcaatcatttccctccatccagagatcattgatggaagaccagggactgtggtgatagagtcatttgtagttgatgtgcccgaggggaacaccaaggatgaaacctgctactttgtagaagctttgattcagtgcaatctcaaatcactttgtgatgtctcagagagacttgcggtgcaggaccacactgagccaatagatcggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

4.54

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AciI CCGC 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 1 cut(s) 156
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 2 cut(s) 82, 275
AluI AGCT 2 cut(s) 82, 275
Alw26I GTCTC 3 cut(s) 26, 313, 316
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 196
BccI CCATC 2 cut(s) 177, 179
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 3 cut(s) 26, 313, 316
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 194, 234, 246
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 194, 234, 246
BseGI GGATG 2 cut(s) 169, 256
BseJI GATNNNNATC 1 cut(s) 99
BseMII CTCAG 4 cut(s) 37, 60, 327, 333
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 211
BsmAI GTCTC 3 cut(s) 26, 313, 316
BsmFI GGGAC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 130, 177, 352
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 4 cut(s) 36, 61, 326, 334
BspMI ACCTGC 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 194, 234, 246
BssMI GATC 3 cut(s) 130, 177, 352
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 157
BstDEI CTNAG 6 cut(s) 23, 69, 107, 140, 313, 342
BstF5I GGATG 2 cut(s) 169, 256
BstKTI GATC 3 cut(s) 133, 180, 355
BstMAI GTCTC 3 cut(s) 26, 313, 316
BstMBI GATC 3 cut(s) 130, 177, 352
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 169, 256
BtsIMutI CAGTG 2 cut(s) 290, 339
BveI ACCTGC 1 cut(s) 266
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 5 cut(s) 49, 82, 275, 346, 358
CviKI_1 RGCY 5 cut(s) 49, 82, 275, 346, 358
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 6 cut(s) 23, 69, 107, 140, 313, 342
DpnI GATC 3 cut(s) 132, 179, 354
DpnII GATC 3 cut(s) 130, 177, 352
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaqI GGGAC 1 cut(s) 211
FokI GGATG 2 cut(s) 156, 263
FspBI CTAG 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 2 cut(s) 212, 280
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 26, 125, 316, 362
Hpy188III TCNNGA 3 cut(s) 8, 86, 173
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 288, 331
HpyF3I CTNAG 6 cut(s) 23, 69, 107, 140, 313, 342
Kzo9I GATC 3 cut(s) 130, 177, 352
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 30, 66, 180, 186, 207, 271, 317
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 63
MalI GATC 3 cut(s) 132, 179, 354
MboI GATC 3 cut(s) 130, 177, 352
MboII GAAGA 3 cut(s) 95, 144, 201
MhlI GDGCHC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 66, 119, 176, 229
MseI TTAA 2 cut(s) 39, 114
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
NdeII GATC 3 cut(s) 130, 177, 352
PfeI GAWTC 1 cut(s) 280
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 39, 114
Sau3AI GATC 3 cut(s) 130, 177, 352
Sau96I GGNCC 1 cut(s) 334
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 234
SetI ASST 4 cut(s) 77, 84, 260, 277
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 62
SsiI CCGC 1 cut(s) 326
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 202
TatI WGTACW 1 cut(s) 65
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 2 cut(s) 39, 114
Tru9I TTAA 2 cut(s) 39, 114
TscAI CASTG 2 cut(s) 290, 346
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 2 cut(s) 290, 346
VpaK11BI GGWCC 1 cut(s) 334
XspI CTAG 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.