RLG00000026321

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007683
Physical Location & Seq
Forward (+)
2175533 .. 2177416
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026321

Sequence Viewer

Length: 726 bp
ATGATAGGGAGGCCTGAGGTGCTTCTTCTATGGCGTGTGATCCCAGAGCGCAGGAACGGAGCTGAAGCTAAAGGTACAAGCTTTAGTTTGGAGATTGGTCTCATTCATTTCTGGTTGGCAAGAGGAAGTGAAGAAAGAAGAAGGAGAAGAAGGAAGATGAATGGGAGTAATAAGAATGGAGGAGGAGGAGGAGGTGCTAATGAGTACATTAGGAGGCACCATAGGCACGAGCTGAAGGATCATCAGTGTAGCTCTACGCTCGTCAGGCACATCAAGGCCCCTGTTCATCTTGTTTGGTCCTTAGTAAGACGGTTTGATCAACCCCAAAAGTACAAGCCATTCGTGAGCAGGTGCGTTGTGCAGGGAAATCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACCACTAGTACTGAGAGGTTGGAGCTTCTTGATGATGACGAGCATCTTCTTAGCATTAAAATAATCGGAGGAGATCACAGACTTAGGAACTACTCTTCAATCATTTCCCTCCATCCAGAGATCATTGATGGAAGACCAGGGACTGTGGTGATCGAGTCATTTGTAGTTGATGTGCCCGAGGGGAACACCAAGGATGAAACCTGCTACTTTGTAGAAGCTTTGATTCAGTGCAATCTCAAATCACTTTGTGATGTCTCAGAGAGACTTGCGGTGCAGGACCACACTGAACCAATAGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

242

Amino Acids

27.38

Weight (kDa)

8.61

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 83 - 225 3.7e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 339
Acc36I ACCTGC 2 cut(s) 339, 629
AccB1I GGYRCC 1 cut(s) 216
AciI CCGC 1 cut(s) 689
AclWI GGATC 2 cut(s) 34, 246
AcuI CTGAAG 2 cut(s) 84, 254
AdeI CACNNNGTG 1 cut(s) 668
AfaI GTAC 4 cut(s) 76, 206, 332, 430
AgsI TTSAA 1 cut(s) 519
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 7 cut(s) 62, 68, 81, 232, 252, 445, 638
AluI AGCT 7 cut(s) 62, 68, 81, 232, 252, 445, 638
Alw26I GTCTC 4 cut(s) 104, 389, 676, 679
AlwI GGATC 2 cut(s) 34, 246
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 2 cut(s) 11, 276
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 3 cut(s) 277, 297, 697
AsuHPI GGTGA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 2 cut(s) 297, 697
AxyI CCTNAGG 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 597
BanI GGYRCC 1 cut(s) 216
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 559
BccI CCATC 2 cut(s) 540, 542
BciT130I CCWGG 1 cut(s) 558
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 104, 389, 676, 679
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfuAI ACCTGC 2 cut(s) 339, 629
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 297, 697
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 3 cut(s) 277, 297, 697
BmiI GGNNCC 2 cut(s) 218, 279
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 557, 597, 609
Bse21I CCTNAGG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 3 cut(s) 557, 597, 609
BseGI GGATG 2 cut(s) 532, 619
BseMII CTCAG 4 cut(s) 6, 400, 423, 690
BseRI GAGGAG 5 cut(s) 195, 198, 201, 204, 504
BseSI GKGCMC 1 cut(s) 597
BsgI GTGCAG 2 cut(s) 380, 713
BshFI GGCC 2 cut(s) 13, 278
BshNI GGYRCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 574
BsmAI GTCTC 4 cut(s) 104, 389, 676, 679
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 2 cut(s) 13, 278
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
BspACI CCGC 1 cut(s) 689
BspANI GGCC 2 cut(s) 13, 278
BspCNI CTCAG 4 cut(s) 7, 399, 424, 689
BspLI GGNNCC 2 cut(s) 218, 279
BspMI ACCTGC 2 cut(s) 339, 629
BspPI GGATC 2 cut(s) 34, 246
BspT107I GGYRCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 557, 597, 609
BssMI GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 312, 565
Bst6I CTCTTC 1 cut(s) 520
BstDEI CTNAG 7 cut(s) 15, 301, 386, 432, 470, 503, 676
BstF5I GGATG 2 cut(s) 532, 619
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 7 cut(s) 42, 241, 319, 496, 543, 573, 718
BstMAI GTCTC 4 cut(s) 104, 389, 676, 679
BstMBI GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
BstMWI GCNNNNNNNGC 3 cut(s) 19, 223, 265
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 597
BstV2I GAAGAC 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 15
BsuRI GGCC 2 cut(s) 13, 278
BtsCI GGATG 2 cut(s) 532, 619
BtsIMutI CAGTG 3 cut(s) 251, 653, 702
BveI ACCTGC 2 cut(s) 339, 629
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 3 cut(s) 277, 297, 697
Csp6I GTAC 4 cut(s) 75, 205, 331, 429
CviQI GTAC 4 cut(s) 75, 205, 331, 429
DdeI CTNAG 7 cut(s) 15, 301, 386, 432, 470, 503, 676
DpnI GATC 7 cut(s) 41, 240, 318, 495, 542, 572, 717
DpnII GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
DraIII CACNNNGTG 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 609
Eco147I AGGCCT 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 297, 697
Eco57I CTGAAG 2 cut(s) 84, 254
Eco81I CCTNAGG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaiI YATR 2 cut(s) 31, 222
FaqI GGGAC 1 cut(s) 574
FbaI TGATCA 1 cut(s) 316
FokI GGATG 2 cut(s) 519, 626
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 13, 278
HhaI GCGC 1 cut(s) 51
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 2 cut(s) 79, 636
HinfI GANTC 2 cut(s) 575, 643
HphI GGTGA 1 cut(s) 580
Hpy188I TCNGA 4 cut(s) 389, 488, 679, 725
Hpy188III TCNNGA 4 cut(s) 343, 371, 449, 536
HpyAV CCTTC 3 cut(s) 135, 144, 229
HpyCH4III ACNGT 2 cut(s) 312, 565
HpyCH4V TGCA 3 cut(s) 361, 651, 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 223, 265
HpyF3I CTNAG 7 cut(s) 15, 301, 386, 432, 470, 503, 676
HspAI GCGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
LmnI GCTCC 2 cut(s) 59, 442
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 426
MalI GATC 7 cut(s) 41, 240, 318, 495, 542, 572, 717
MboI GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
MboII GAAGA 8 cut(s) 17, 143, 150, 159, 166, 458, 507, 564
MhlI GDGCHC 1 cut(s) 597
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 420
MseI TTAA 2 cut(s) 402, 477
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MwoI GCNNNNNNNGC 3 cut(s) 19, 223, 265
NdeII GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
NlaIV GGNNCC 2 cut(s) 218, 279
PaqCI CACCTGC 1 cut(s) 339
PceI AGGCCT 1 cut(s) 13
PfeI GAWTC 1 cut(s) 643
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 2 cut(s) 218, 279
PspPI GGNCC 3 cut(s) 277, 297, 697
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 4 cut(s) 76, 206, 332, 430
RsaNI GTAC 4 cut(s) 75, 205, 331, 429
SaqAI TTAA 2 cut(s) 402, 477
Sau3AI GATC 7 cut(s) 39, 238, 316, 493, 540, 570, 715
Sau96I GGNCC 3 cut(s) 277, 297, 697
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 2 cut(s) 297, 697
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 425
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 1 cut(s) 689
SspMI CTAG 1 cut(s) 426
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 312, 565
TaqI TCGA 1 cut(s) 573
TatI WGTACW 3 cut(s) 204, 330, 428
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 2 cut(s) 402, 477
Tru9I TTAA 2 cut(s) 402, 477
TscAI CASTG 3 cut(s) 251, 653, 709
TspDTI ATGAA 4 cut(s) 95, 173, 275, 630
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 3 cut(s) 251, 653, 709
VpaK11BI GGWCC 2 cut(s) 297, 697
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.