Rh1DG429300

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007683
Physical Location & Seq
Reverse (-)
64150969 .. 64152799
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG429300.1

Sequence Viewer

Length: 642 bp
ATGATAGGGAGGCCTGAGAGCGCAGAAACAGAGCTGAAGCTAAAGAGAGGAAGTGAAGAAAGAAGAAGGAAGATGAATGGGAGTAATAAGAATGGAGGAGGAGGAGGAGGTGCTAATGAGTACATTAGGAGGCACCATAGGCACGAGCTGAAGGATCATCAGTGTAGCTCTACGCTCGTCAGGCACATCAAGGCCCCTGTTCATCTTGTTTGGTCATTGGTCAGACGGTTTGATCAACCCCAAAAGTACAAGCCATTCGTGAGCAGGTGTGTTGTGCAGGGAAATCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACCACTAGTACTGAGAGGTTGGAGCTTCTTGATGATGACGAGCATCTTCTTAGCATTAAAATAATCGGAGGAGATCACAGACTTAGGAACTACTCTTCAATCATTTCCCTCCATCCAGAGATCATTGATGGAAGACCAGGGACTGTGGTGATCGAGTCATTTGTAGTTGATGTGCCCGAGGGGAACACCAAGGATGAAACCTGCTACTTTGTAGAAGCTTTGATTCAGTGCAATCTCAAATCACTTTGTGATGTCTCAGAGAGACTGGCGGTGCAGGACCACACTGAACCAATAGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

213

Amino Acids

24.04

Weight (kDa)

6.8

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 55 - 197 2.6e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 2 cut(s) 255, 545
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 605
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 56, 170
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 3 cut(s) 122, 248, 346
AgsI TTSAA 1 cut(s) 435
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 6 cut(s) 34, 40, 148, 168, 361, 554
AluI AGCT 6 cut(s) 34, 40, 148, 168, 361, 554
Alw26I GTCTC 3 cut(s) 305, 592, 595
AlwI GGATC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 2 cut(s) 11, 192
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 193, 613
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 513
BanI GGYRCC 1 cut(s) 132
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 475
BccI CCATC 2 cut(s) 456, 458
BciT130I CCWGG 1 cut(s) 474
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 305, 592, 595
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 1 cut(s) 342
BfuAI ACCTGC 2 cut(s) 255, 545
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 193, 613
BmiI GGNNCC 2 cut(s) 134, 195
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 475
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 473, 513, 525
Bse1I ACTGG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 3 cut(s) 473, 513, 525
BseGI GGATG 2 cut(s) 448, 535
BseMII CTCAG 4 cut(s) 6, 316, 339, 606
BseNI ACTGG 1 cut(s) 606
BseRI GAGGAG 5 cut(s) 111, 114, 117, 120, 420
BseSI GKGCMC 1 cut(s) 513
BsgI GTGCAG 2 cut(s) 296, 629
BshFI GGCC 2 cut(s) 13, 194
BshNI GGYRCC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 490
BsmAI GTCTC 3 cut(s) 305, 592, 595
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 2 cut(s) 13, 194
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 6 cut(s) 154, 232, 409, 456, 486, 631
BspACI CCGC 1 cut(s) 605
BspANI GGCC 2 cut(s) 13, 194
BspCNI CTCAG 4 cut(s) 7, 315, 340, 605
BspLI GGNNCC 2 cut(s) 134, 195
BspMI ACCTGC 2 cut(s) 255, 545
BspPI GGATC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 3 cut(s) 473, 513, 525
BssMI GATC 6 cut(s) 154, 232, 409, 456, 486, 631
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 228, 481
Bst6I CTCTTC 1 cut(s) 436
BstDEI CTNAG 6 cut(s) 15, 302, 348, 386, 419, 592
BstF5I GGATG 2 cut(s) 448, 535
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 6 cut(s) 157, 235, 412, 459, 489, 634
BstMAI GTCTC 3 cut(s) 305, 592, 595
BstMBI GATC 6 cut(s) 154, 232, 409, 456, 486, 631
BstMWI GCNNNNNNNGC 2 cut(s) 139, 181
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 513
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 2 cut(s) 13, 194
BtsCI GGATG 2 cut(s) 448, 535
BtsIMutI CAGTG 3 cut(s) 167, 569, 618
BveI ACCTGC 2 cut(s) 255, 545
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 193, 613
Csp6I GTAC 3 cut(s) 121, 247, 345
CviQI GTAC 3 cut(s) 121, 247, 345
DdeI CTNAG 6 cut(s) 15, 302, 348, 386, 419, 592
DpnI GATC 6 cut(s) 156, 234, 411, 458, 488, 633
DpnII GATC 6 cut(s) 154, 232, 409, 456, 486, 631
DraIII CACNNNGTG 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 56, 170
Eco88I CYCGRG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaiI YATR 1 cut(s) 138
FaqI GGGAC 1 cut(s) 490
FbaI TGATCA 1 cut(s) 232
FokI GGATG 2 cut(s) 435, 542
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 22
HaeIII GGCC 2 cut(s) 13, 194
HhaI GCGC 1 cut(s) 23
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 2 cut(s) 491, 559
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 5 cut(s) 224, 305, 404, 595, 641
Hpy188III TCNNGA 4 cut(s) 259, 287, 365, 452
HpyAV CCTTC 2 cut(s) 60, 145
HpyCH4III ACNGT 2 cut(s) 228, 481
HpyCH4V TGCA 3 cut(s) 277, 567, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 181
HpyF3I CTNAG 6 cut(s) 15, 302, 348, 386, 419, 592
HspAI GCGC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 6 cut(s) 154, 232, 409, 456, 486, 631
LmnI GCTCC 1 cut(s) 358
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 342
MalI GATC 6 cut(s) 156, 234, 411, 458, 488, 633
MboI GATC 6 cut(s) 154, 232, 409, 456, 486, 631
MboII GAAGA 6 cut(s) 68, 75, 82, 374, 423, 480
MhlI GDGCHC 1 cut(s) 513
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 336
MseI TTAA 2 cut(s) 318, 393
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 139, 181
NdeII GATC 6 cut(s) 154, 232, 409, 456, 486, 631
NlaIV GGNNCC 2 cut(s) 134, 195
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 13
PfeI GAWTC 1 cut(s) 559
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 134, 195
PspPI GGNCC 2 cut(s) 193, 613
PstNI CAGNNNCTG 1 cut(s) 479
RsaI GTAC 3 cut(s) 122, 248, 346
RsaNI GTAC 3 cut(s) 121, 247, 345
SaqAI TTAA 2 cut(s) 318, 393
Sau3AI GATC 6 cut(s) 154, 232, 409, 456, 486, 631
Sau96I GGNCC 2 cut(s) 193, 613
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 1 cut(s) 605
SspMI CTAG 1 cut(s) 342
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 228, 481
TaqI TCGA 1 cut(s) 489
TatI WGTACW 3 cut(s) 120, 246, 344
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 2 cut(s) 318, 393
Tru9I TTAA 2 cut(s) 318, 393
TscAI CASTG 3 cut(s) 167, 569, 625
TspDTI ATGAA 3 cut(s) 89, 191, 546
TspRI CASTG 3 cut(s) 167, 569, 625
VpaK11BI GGWCC 1 cut(s) 613
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.