AT5G53160

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007683
Physical Location & Seq
Forward (+)
21560601 .. 21562709
2109 bp
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UTR
Exon/CDS
Intron
AT5G53160.1

Sequence Viewer

Length: 474 bp
ATGGAAGCTAACGGGATTGAGAACTTGACGAATCCGAATCAGGAAAGAGAGTTTATAAGGAGACATCATAAGCATGAGCTTGTGGATAATCAGTGTAGCTCTACGCTTGTTAAACATATCAACGCTCCTGTTCATATTGTGTGGTCACTTGTGAGAAGATTTGATCAGCCACAGAAGTATAAGCCGTTTATCAGTAGATGTGTGGTGAAAGGAAACATGGAGATTGGTACAGTAAGAGAAGTTGATGTGAAATCTGGACTACCAGCAACTAGAAGCACTGAGAGATTGGAGTTACTTGATGACAATGAGCATATTCTCAGTATCAGAATCGTTGGTGGTGATCATAGACTTAAGGTAATCAATGAATCAAAAGGTTCGTTTTCTGTTTACAGTGAATCAAAGACTTATATGTTCTATATTGTTTTTGGATTTAGAACTATTCTTCAATCATCTCTCTTCACCCCGAGACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

157

Amino Acids

18.18

Weight (kDa)

9.2

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 32 - 114 5.8e-12 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AfaI GTAC 1 cut(s) 229
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 446
AluBI AGCT 3 cut(s) 8, 79, 99
AluI AGCT 3 cut(s) 8, 79, 99
Alw26I GTCTC 2 cut(s) 55, 460
Ama87I CYCGRG 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 217, 350, 451
AvaI CYCGRG 1 cut(s) 463
BceAI ACGGC 1 cut(s) 169
BclI TGATCA 2 cut(s) 163, 340
BcoDI GTCTC 2 cut(s) 55, 460
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 470
BfrI CTTAAG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 270, 331
BsiHKCI CYCGRG 1 cut(s) 463
BsmAI GTCTC 2 cut(s) 55, 460
BsoBI CYCGRG 1 cut(s) 463
Bsp143I GATC 2 cut(s) 163, 340
BspCNI CTCAG 2 cut(s) 271, 330
BspTI CTTAAG 1 cut(s) 350
BssMI GATC 2 cut(s) 163, 340
Bst4CI ACNGT 2 cut(s) 232, 392
Bst6I CTCTTC 1 cut(s) 461
BstAFI CTTAAG 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 279, 317
BstKTI GATC 2 cut(s) 166, 343
BstMAI GTCTC 2 cut(s) 55, 460
BstMBI GATC 2 cut(s) 163, 340
BstSFI CTRYAG 1 cut(s) 470
BtsIMutI CAGTG 3 cut(s) 98, 276, 397
Csp6I GTAC 1 cut(s) 228
CviAII CATG 2 cut(s) 74, 217
CviJI RGCY 5 cut(s) 8, 79, 99, 169, 184
CviKI_1 RGCY 5 cut(s) 8, 79, 99, 169, 184
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 279, 317
DpnI GATC 2 cut(s) 165, 342
DpnII GATC 2 cut(s) 163, 340
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 463
FaeI CATG 2 cut(s) 77, 220
FatI CATG 2 cut(s) 73, 216
FbaI TGATCA 2 cut(s) 163, 340
FspBI CTAG 1 cut(s) 270
Hin1II CATG 2 cut(s) 77, 220
HinfI GANTC 5 cut(s) 31, 37, 327, 365, 395
HphI GGTGA 3 cut(s) 217, 350, 451
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 36, 326
Hpy188III TCNNGA 2 cut(s) 41, 255
Hpy8I GTNNAC 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 232, 392
HpyF3I CTNAG 2 cut(s) 279, 317
Hsp92II CATG 2 cut(s) 77, 220
Ksp22I TGATCA 2 cut(s) 163, 340
Kzo9I GATC 2 cut(s) 163, 340
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 26, 141, 240, 276
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 144, 291
MalI GATC 2 cut(s) 165, 342
MboI GATC 2 cut(s) 163, 340
MboII GAAGA 3 cut(s) 168, 434, 448
MseI TTAA 2 cut(s) 111, 351
MslI CAYNNNNRTG 1 cut(s) 72
MspCI CTTAAG 1 cut(s) 350
NdeII GATC 2 cut(s) 163, 340
NlaIII CATG 2 cut(s) 77, 220
NmuCI GTSAC 1 cut(s) 144
PfeI GAWTC 5 cut(s) 31, 37, 327, 365, 395
PsiI TTATAA 1 cut(s) 56
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 111, 351
Sau3AI GATC 2 cut(s) 163, 340
SetI ASST 5 cut(s) 10, 81, 101, 357, 376
SfcI CTRYAG 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 232, 392
TfiI GAWTC 5 cut(s) 31, 37, 327, 365, 395
Tru1I TTAA 2 cut(s) 111, 351
Tru9I TTAA 2 cut(s) 111, 351
TscAI CASTG 3 cut(s) 98, 283, 397
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 122, 378
TspRI CASTG 3 cut(s) 98, 283, 397
Vha464I CTTAAG 1 cut(s) 350
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.