Rh1BG398600

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007683
Physical Location & Seq
Reverse (-)
52242997 .. 52244908
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG398600.1

Sequence Viewer

Length: 471 bp
ATGTCTTTCGCTAATGTGAACGTTCTGTTTCTTCAGGTTTGGTCATTGGTCAGACGGTTTGATCAACCCCAAAAGTACAAGCCATTCGTGAGCAGGTGTGTTGTGCAGGGAAATCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACCACTAGTACTGAGAGGTTGGAGCTTCTTGATGATGACGAGCATCTTCTTAGCATTAAAATAATCGGAGGAGATCACAGACTTAGGAACTACTCTTCAATCATTTCCCTCCATCCAGAGATCATTGATGGAAGACCAGGGACTGTGGTGATCGAGTCATTTGTAGTTGATGTGCCCGAGGGGAACACCAAGGATGAAACCTGCTACTTTGTAGAAGCTTTGATTCAGTGCAATCTCAAATCACTTTGTGATGTCTCAGAGAGACTGGCGGTGCAGGACCACACTGAACCAATAGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

156

Amino Acids

17.61

Weight (kDa)

4.94

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 12 - 140 9e-16 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 84
Acc36I ACCTGC 2 cut(s) 84, 374
AciI CCGC 1 cut(s) 434
AclI AACGTT 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 77, 175
AgsI TTSAA 1 cut(s) 264
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 190, 383
AluI AGCT 2 cut(s) 190, 383
Alw26I GTCTC 3 cut(s) 134, 421, 424
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 304
BccI CCATC 2 cut(s) 285, 287
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 134, 421, 424
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 1 cut(s) 171
BfuAI ACCTGC 2 cut(s) 84, 374
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 302, 342, 354
Bse1I ACTGG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 302, 342, 354
BseGI GGATG 2 cut(s) 277, 364
BseMII CTCAG 3 cut(s) 145, 168, 435
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 342
BsgI GTGCAG 2 cut(s) 125, 458
BsiHKCI CYCGRG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 3 cut(s) 134, 421, 424
BsmFI GGGAC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 5 cut(s) 61, 238, 285, 315, 460
BspACI CCGC 1 cut(s) 434
BspCNI CTCAG 3 cut(s) 144, 169, 434
BspMI ACCTGC 2 cut(s) 84, 374
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 3 cut(s) 302, 342, 354
BssMI GATC 5 cut(s) 61, 238, 285, 315, 460
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 57, 310
Bst6I CTCTTC 1 cut(s) 265
BstDEI CTNAG 5 cut(s) 131, 177, 215, 248, 421
BstF5I GGATG 2 cut(s) 277, 364
BstKTI GATC 5 cut(s) 64, 241, 288, 318, 463
BstMAI GTCTC 3 cut(s) 134, 421, 424
BstMBI GATC 5 cut(s) 61, 238, 285, 315, 460
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 277, 364
BtsIMutI CAGTG 2 cut(s) 398, 447
BveI ACCTGC 2 cut(s) 84, 374
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 76, 174
CviJI RGCY 5 cut(s) 82, 157, 190, 383, 466
CviKI_1 RGCY 5 cut(s) 82, 157, 190, 383, 466
CviQI GTAC 2 cut(s) 76, 174
DdeI CTNAG 5 cut(s) 131, 177, 215, 248, 421
DpnI GATC 5 cut(s) 63, 240, 287, 317, 462
DpnII GATC 5 cut(s) 61, 238, 285, 315, 460
DraIII CACNNNGTG 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaqI GGGAC 1 cut(s) 319
FbaI TGATCA 1 cut(s) 61
FokI GGATG 2 cut(s) 264, 371
FspBI CTAG 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 2 cut(s) 320, 388
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 5 cut(s) 53, 134, 233, 424, 470
Hpy188III TCNNGA 4 cut(s) 88, 116, 194, 281
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 57, 310
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 106, 396, 439
HpyF3I CTNAG 5 cut(s) 131, 177, 215, 248, 421
HpySE526I ACGT 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 61, 238, 285, 315, 460
LmnI GCTCC 1 cut(s) 187
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 21
MalI GATC 5 cut(s) 63, 240, 287, 317, 462
MboI GATC 5 cut(s) 61, 238, 285, 315, 460
MboII GAAGA 4 cut(s) 23, 203, 252, 309
MhlI GDGCHC 1 cut(s) 342
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 174, 227, 284, 337
MseI TTAA 2 cut(s) 147, 222
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
NdeII GATC 5 cut(s) 61, 238, 285, 315, 460
PaqCI CACCTGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 388
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspPI GGNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 2 cut(s) 77, 175
RsaNI GTAC 2 cut(s) 76, 174
SaqAI TTAA 2 cut(s) 147, 222
Sau3AI GATC 5 cut(s) 61, 238, 285, 315, 460
Sau96I GGNCC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 342
SetI ASST 7 cut(s) 24, 39, 98, 185, 192, 368, 385
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 170
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 57, 310
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 318
TatI WGTACW 2 cut(s) 75, 173
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 147, 222
Tru9I TTAA 2 cut(s) 147, 222
TscAI CASTG 2 cut(s) 398, 454
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 2 cut(s) 398, 454
VpaK11BI GGWCC 1 cut(s) 442
XspI CTAG 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.