FvH4_7g31130

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007683
Physical Location & Seq
Reverse (-)
22526500 .. 22528721
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31130.t2

Sequence Viewer

Length: 567 bp
ATGAATGGGAATAATAAGAATGGAGGAGGAGGAGGTGCGAGTGAGTACATTAGGAGGCACCATAGGCATGAGCTGAAGGATCATCAGTGTAGCTCTACGCTCGTCAGGCACATCAAAGCGCCTGTTCATCTTGTTTGGTCATTGGTAAGACGGTTTGATCAACCCCAAAAGTACAAGCCATTCGTGAGCAGGTGTGTTGTGCAGGGAAATCTTGAGATTGGGAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACCACTAGTACTGAGAGGTTGGAACTTCTTGATGACGACGAGCATCTTCTTAGCATTAAAATAATTGGTGGAGATCACAGACTTAGGAACTACTCTTCAATCATTTCCCTCCATCCAGAAATCGTTGATGGAAGACCAGGGACTGTGGTGATCGAGTCATTTGTAGTTGATGTGCCTGAGGGGAACACCAAGGATGAAACCTGCTACTTTGTTGAAGCTTTGATTCAATGCAATCTCAAATCACTTTGTGATGTCTCAGAGAGGCTTGCAGTGCAGGACCACACTGAACCAATAGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

6.19

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 74 - 216 3.3e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 180
Acc36I ACCTGC 2 cut(s) 180, 470
AccB1I GGYRCC 1 cut(s) 57
AclWI GGATC 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 3 cut(s) 47, 173, 271
AgsI TTSAA 3 cut(s) 360, 476, 488
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 3 cut(s) 73, 93, 479
AluI AGCT 3 cut(s) 73, 93, 479
Alw26I GTCTC 2 cut(s) 230, 520
AlwI GGATC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 404
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 538
AxyI CCTNAGG 1 cut(s) 438
BanI GGYRCC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 400
BccI CCATC 2 cut(s) 381, 383
BciT130I CCWGG 1 cut(s) 399
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 230, 520
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 122
BfuAI ACCTGC 2 cut(s) 180, 470
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 398, 450
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 398, 450
BseGI GGATG 2 cut(s) 373, 460
BseMII CTCAG 4 cut(s) 241, 264, 429, 531
BseRI GAGGAG 3 cut(s) 39, 42, 45
BsgI GTGCAG 2 cut(s) 221, 554
BshNI GGYRCC 1 cut(s) 57
BslFI GGGAC 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 230, 520
BsmFI GGGAC 1 cut(s) 415
Bsp143I GATC 5 cut(s) 79, 157, 334, 411, 556
BspCNI CTCAG 4 cut(s) 240, 265, 430, 530
BspLI GGNNCC 1 cut(s) 59
BspMI ACCTGC 2 cut(s) 180, 470
BspPI GGATC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 398, 450
BssMI GATC 5 cut(s) 79, 157, 334, 411, 556
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 153, 406
Bst6I CTCTTC 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 6 cut(s) 227, 273, 311, 344, 438, 517
BstF5I GGATG 2 cut(s) 373, 460
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 5 cut(s) 82, 160, 337, 414, 559
BstMAI GTCTC 2 cut(s) 230, 520
BstMBI GATC 5 cut(s) 79, 157, 334, 411, 556
BstMWI GCNNNNNNNGC 3 cut(s) 64, 106, 532
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 373, 460
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 92, 537, 543
BveI ACCTGC 2 cut(s) 180, 470
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 538
Csp6I GTAC 3 cut(s) 46, 172, 270
CviAII CATG 1 cut(s) 68
CviJI RGCY 7 cut(s) 73, 93, 178, 253, 479, 526, 562
CviKI_1 RGCY 7 cut(s) 73, 93, 178, 253, 479, 526, 562
CviQI GTAC 3 cut(s) 46, 172, 270
DdeI CTNAG 6 cut(s) 227, 273, 311, 344, 438, 517
DpnI GATC 5 cut(s) 81, 159, 336, 413, 558
DpnII GATC 5 cut(s) 79, 157, 334, 411, 556
DraIII CACNNNGTG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 71
FaiI YATR 2 cut(s) 63, 69
FaqI GGGAC 1 cut(s) 415
FatI CATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 157
FokI GGATG 2 cut(s) 360, 467
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 122
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 3 cut(s) 223, 416, 484
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 230, 520, 566
Hpy188III TCNNGA 4 cut(s) 184, 212, 290, 377
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 153, 406
HpyCH4V TGCA 4 cut(s) 202, 492, 530, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 106, 532
HpyF3I CTNAG 6 cut(s) 227, 273, 311, 344, 438, 517
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 5 cut(s) 79, 157, 334, 411, 556
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 267
MalI GATC 5 cut(s) 81, 159, 336, 413, 558
MboI GATC 5 cut(s) 79, 157, 334, 411, 556
MboII GAAGA 3 cut(s) 299, 348, 405
MluCI AATT 1 cut(s) 324
MlyI GAGTC 2 cut(s) 232, 425
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 9 cut(s) 17, 20, 23, 26, 48, 270, 380, 433, 516
MseI TTAA 2 cut(s) 243, 318
MslI CAYNNNNRTG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 64, 106, 532
NdeII GATC 5 cut(s) 79, 157, 334, 411, 556
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 484
PleI GAGTC 2 cut(s) 231, 424
PpsI GAGTC 2 cut(s) 231, 424
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 404
RsaI GTAC 3 cut(s) 47, 173, 271
RsaNI GTAC 3 cut(s) 46, 172, 270
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 243, 318
Sau3AI GATC 5 cut(s) 79, 157, 334, 411, 556
Sau96I GGNCC 1 cut(s) 538
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 2 cut(s) 232, 425
ScrFI CCNGG 1 cut(s) 399
SetI ASST 7 cut(s) 37, 75, 95, 194, 281, 464, 481
SfaNI GCATC 1 cut(s) 313
SinI GGWCC 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 1 cut(s) 324
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 153, 406
TaqI TCGA 1 cut(s) 414
TasI AATT 1 cut(s) 324
TatI WGTACW 3 cut(s) 45, 171, 269
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 2 cut(s) 243, 318
Tru9I TTAA 2 cut(s) 243, 318
TscAI CASTG 3 cut(s) 92, 537, 550
TspDTI ATGAA 3 cut(s) 17, 116, 471
TspRI CASTG 3 cut(s) 92, 537, 550
VpaK11BI GGWCC 1 cut(s) 538
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.