Rroxscaffold_4G00279580

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007683
Physical Location & Seq
Forward (+)
2352706 .. 2354850
2145 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00279580.1

Sequence Viewer

Length: 570 bp
ATGAATGGGAGTAATAAGAATGGAGGAGGAGGAGGAAGTGCTAATGAGTACATTAGGAGGCACCATAGGCACGAGCTGAAGGATCATCAGTGTAGCTCTACGCTCGTCAGGCACATCAAGGCCCCTGTTCATCTTGTTTGGTCATTAGTAAGACGGTTTGATCAACCCCAAAAGTACAAGCCATTTGTGAGCAGGTGTGTTGTGCAGGGAAATCTTGAGATTGGAAGTCTCAGAGAAGTTGATGTTAAGTCTGGGCTTCCTGCCACCACTAGTACTGAGAGGTTGGAGCTTCTTGATGATGACGAGCATCTTCTTAGCATTAAAATAATCGGAGGAGATCACAGACTTAGGAACTACTCTTCAATCATTTCCCTCCATCCAGAGATCATTGATGGAAGACCAGGGACTGTGGTGATCGAGTCATTTGTAGTTGATGTGCCCGAGGGGAACACCAAGGATGAAACCTGCTACTTTGTAGAAGCTTTGATTCAGTGCAATCTCAAATCACTCTGTGATGTCTCAGAGAGACTTGCGGTGCAGGACCACACTGAACCAATAGATCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010646 GO:0010647 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

189

Amino Acids

21.23

Weight (kDa)

6.19

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 31 - 173 1.8e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 183
Acc36I ACCTGC 2 cut(s) 183, 473
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 1 cut(s) 533
AclWI GGATC 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 3 cut(s) 50, 176, 274
AgsI TTSAA 1 cut(s) 363
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 4 cut(s) 76, 96, 289, 482
AluI AGCT 4 cut(s) 76, 96, 289, 482
Alw26I GTCTC 3 cut(s) 233, 520, 523
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 407
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 121, 541
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 60
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 403
BccI CCATC 2 cut(s) 384, 386
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 233, 520, 523
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 1 cut(s) 270
BfuAI ACCTGC 2 cut(s) 183, 473
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 121, 541
BmiI GGNNCC 2 cut(s) 62, 123
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 401, 441, 453
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 3 cut(s) 401, 441, 453
BseGI GGATG 2 cut(s) 376, 463
BseMII CTCAG 3 cut(s) 244, 267, 534
BseRI GAGGAG 4 cut(s) 39, 42, 45, 348
BseSI GKGCMC 1 cut(s) 441
BsgI GTGCAG 2 cut(s) 224, 557
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 418
BsmAI GTCTC 3 cut(s) 233, 520, 523
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 6 cut(s) 82, 160, 337, 384, 414, 559
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 3 cut(s) 243, 268, 533
BspLI GGNNCC 2 cut(s) 62, 123
BspMI ACCTGC 2 cut(s) 183, 473
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 401, 441, 453
BssMI GATC 6 cut(s) 82, 160, 337, 384, 414, 559
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 156, 409
Bst6I CTCTTC 1 cut(s) 364
BstDEI CTNAG 5 cut(s) 230, 276, 314, 347, 520
BstF5I GGATG 2 cut(s) 376, 463
BstKTI GATC 6 cut(s) 85, 163, 340, 387, 417, 562
BstMAI GTCTC 3 cut(s) 233, 520, 523
BstMBI GATC 6 cut(s) 82, 160, 337, 384, 414, 559
BstMWI GCNNNNNNNGC 2 cut(s) 67, 109
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 2 cut(s) 376, 463
BtsIMutI CAGTG 3 cut(s) 95, 497, 546
BveI ACCTGC 2 cut(s) 183, 473
CaiI CAGNNNCTG 1 cut(s) 407
Cfr13I GGNCC 2 cut(s) 121, 541
Csp6I GTAC 3 cut(s) 49, 175, 273
CviJI RGCY 8 cut(s) 76, 96, 122, 181, 256, 289, 482, 565
CviKI_1 RGCY 8 cut(s) 76, 96, 122, 181, 256, 289, 482, 565
CviQI GTAC 3 cut(s) 49, 175, 273
DdeI CTNAG 5 cut(s) 230, 276, 314, 347, 520
DpnI GATC 6 cut(s) 84, 162, 339, 386, 416, 561
DpnII GATC 6 cut(s) 82, 160, 337, 384, 414, 559
DraIII CACNNNGTG 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaiI YATR 1 cut(s) 66
FaqI GGGAC 1 cut(s) 418
FbaI TGATCA 1 cut(s) 160
FokI GGATG 2 cut(s) 363, 470
FspBI CTAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 2 cut(s) 419, 487
HphI GGTGA 1 cut(s) 424
Hpy188I TCNGA 4 cut(s) 233, 332, 523, 569
Hpy188III TCNNGA 3 cut(s) 215, 293, 380
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 156, 409
HpyCH4V TGCA 3 cut(s) 205, 495, 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 109
HpyF3I CTNAG 5 cut(s) 230, 276, 314, 347, 520
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 6 cut(s) 82, 160, 337, 384, 414, 559
LmnI GCTCC 1 cut(s) 286
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 270
MalI GATC 6 cut(s) 84, 162, 339, 386, 416, 561
MboI GATC 6 cut(s) 82, 160, 337, 384, 414, 559
MboII GAAGA 3 cut(s) 302, 351, 408
MhlI GDGCHC 1 cut(s) 441
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 9 cut(s) 17, 20, 23, 26, 51, 273, 326, 383, 436
MseI TTAA 2 cut(s) 246, 321
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 67, 109
NdeII GATC 6 cut(s) 82, 160, 337, 384, 414, 559
NlaIV GGNNCC 2 cut(s) 62, 123
PaqCI CACCTGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 487
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 62, 123
PspPI GGNCC 2 cut(s) 121, 541
PstNI CAGNNNCTG 1 cut(s) 407
RsaI GTAC 3 cut(s) 50, 176, 274
RsaNI GTAC 3 cut(s) 49, 175, 273
SaqAI TTAA 2 cut(s) 246, 321
Sau3AI GATC 6 cut(s) 82, 160, 337, 384, 414, 559
Sau96I GGNCC 2 cut(s) 121, 541
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 441
SetI ASST 7 cut(s) 78, 98, 197, 284, 291, 467, 484
SfaNI GCATC 1 cut(s) 316
SinI GGWCC 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 1 cut(s) 533
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 156, 409
TaqI TCGA 1 cut(s) 417
TatI WGTACW 3 cut(s) 48, 174, 272
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 2 cut(s) 246, 321
Tru9I TTAA 2 cut(s) 246, 321
TscAI CASTG 3 cut(s) 95, 497, 553
TspDTI ATGAA 3 cut(s) 17, 119, 474
TspRI CASTG 3 cut(s) 95, 497, 553
VpaK11BI GGWCC 1 cut(s) 541
XspI CTAG 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.