AT4G27990

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014396
Physical Location & Seq
Reverse (-)
13923594 .. 13924775
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27990.1

Sequence Viewer

Length: 657 bp
ATGGCTTCTTTCACAACCAACAGTCTCGCTCTTCGCGCTTCAATTCTCGCAAACCCTAGACTACCTCCTCCGATCATCCGTCCCCGTCTCTCTCTTCCCCGTAAACTCTCTTTCAATCTCTCCCTCCATAACGCTAGAACCATCGTTTCCTCCGCCGTTACCTCCTCGTCTCCGGTACTCTCCTCTAAACCCCCTTCTCAATTCCCCTTCTCCGACTCAACTAGATCGATCACCACCCTCGTGCTTCTAGCCGGCGTCGTAATCAAATCTCTAATTCAGAAGCTCTCTGTCGCAATTGTGAACCTATCTCCACAGATTCAAGCATCTTTCCGAACAGCAAGTCCGTTGTTCTTCGCGTCGCTCCGTGATCGACCCGCCGGTTATCTGAACACTCCGTTGACGGTAGTTGCAGCCGGGCTATCGAAATGGCTCGATATATACAGTGGTGTTCTGATGGTCAGAGTTTTGCTCAGTTGGTTCCCAAACATTCCATGGGATCGTCAGCCTTTGTCAGCCATTAGAGATCTGTGTGATCCTTATCTTAATCTCTTCAGGAACATTATCCCTCCAGTCTTTGATACGCTTGACGTTAGCCCTTTGCTTGCTTTCGCCGTTTTGGGAACTCTAGGTTCGATTCTCAACAACAGCAGAGGATAG

Protein Analysis

218

Amino Acids

23.7

Weight (kDa)

11.28

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 144 - 212 1.3e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 36, 356
AciI CCGC 2 cut(s) 153, 375
AclWI GGATC 2 cut(s) 504, 527
AcuI CTGAAG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 3 cut(s) 42, 115, 320
AleI CACNNNNGTG 1 cut(s) 239
AloI GAACNNNNNNTCC 2 cut(s) 325, 357
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 3 cut(s) 29, 92, 174
AlwI GGATC 2 cut(s) 504, 527
ApeKI GCWGC 1 cut(s) 410
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 223
BauI CACGAG 1 cut(s) 239
BbvI GCAGC 1 cut(s) 422
BccI CCATC 2 cut(s) 149, 448
BceAI ACGGC 2 cut(s) 140, 596
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 3 cut(s) 29, 92, 174
BfaI CTAG 5 cut(s) 57, 135, 222, 248, 626
BglII AGATCT 1 cut(s) 523
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 453, 485
BpmI CTGGAG 1 cut(s) 552
BpuMI CCSGG 1 cut(s) 415
Bsa29I ATCGAT 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 172
Bse118I RCCGGY 2 cut(s) 251, 377
Bse1I ACTGG 1 cut(s) 569
Bse8I GATNNNNATC 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 537
BseMII CTCAG 1 cut(s) 484
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 3 cut(s) 57, 154, 172
BseXI GCAGC 1 cut(s) 422
Bsh1236I CGCG 2 cut(s) 36, 356
BshVI ATCGAT 1 cut(s) 227
BsiSI CCGG 4 cut(s) 173, 252, 378, 414
BslFI GGGAC 1 cut(s) 66
BsmAI GTCTC 3 cut(s) 29, 92, 174
BsmBI CGTCTC 2 cut(s) 92, 174
BsmFI GGGAC 1 cut(s) 66
Bsp143I GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
Bsp19I CCATGG 1 cut(s) 491
BspACI CCGC 2 cut(s) 153, 375
BspCNI CTCAG 1 cut(s) 483
BspDI ATCGAT 1 cut(s) 227
BspFNI CGCG 2 cut(s) 36, 356
BspLI GGNNCC 1 cut(s) 479
BspPI GGATC 2 cut(s) 504, 527
BspQI GCTCTTC 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 251, 377
BsrI ACTGG 1 cut(s) 569
BssAI RCCGGY 2 cut(s) 251, 377
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 491
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 23, 403, 443
Bst6I CTCTTC 3 cut(s) 36, 99, 554
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 253, 603
BstDEI CTNAG 1 cut(s) 470
BstDSI CCRYGG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 2 cut(s) 36, 356
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 7 cut(s) 75, 227, 231, 370, 499, 526, 535
BstMAI GTCTC 3 cut(s) 29, 92, 174
BstMBI GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 413
BstUI CGCG 2 cut(s) 36, 356
BstV1I GCAGC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
Bsu15I ATCGAT 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 491
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 253, 603
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 2 cut(s) 251, 377
ClaI ATCGAT 1 cut(s) 227
CseI GACGC 2 cut(s) 244, 345
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 492
CviJI RGCY 9 cut(s) 5, 251, 283, 413, 418, 430, 505, 515, 594
CviKI_1 RGCY 9 cut(s) 5, 251, 283, 413, 418, 430, 505, 515, 594
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 470
DpnI GATC 7 cut(s) 74, 226, 230, 369, 498, 525, 534
DpnII GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
Eam1104I CTCTTC 3 cut(s) 36, 99, 554
EarI CTCTTC 3 cut(s) 36, 99, 554
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 491
Esp3I CGTCTC 2 cut(s) 92, 174
FaeI CATG 1 cut(s) 495
FaiI YATR 4 cut(s) 129, 437, 439, 493
FaqI GGGAC 1 cut(s) 66
FatI CATG 1 cut(s) 491
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 5 cut(s) 57, 135, 222, 248, 626
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 552
HapII CCGG 4 cut(s) 173, 252, 378, 414
HgaI GACGC 2 cut(s) 244, 345
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 495
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 3 cut(s) 215, 316, 634
HpaII CCGG 4 cut(s) 173, 252, 378, 414
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 3 cut(s) 104, 301, 399
Hpy188I TCNGA 7 cut(s) 72, 214, 279, 332, 387, 453, 461
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 3 cut(s) 104, 301, 399
Hpy99I CGWCG 2 cut(s) 260, 361
HpyAV CCTTC 2 cut(s) 204, 217
HpyCH4III ACNGT 3 cut(s) 23, 403, 443
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 495
HspAI GCGC 1 cut(s) 36
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 6 cut(s) 186, 265, 391, 427, 538, 582
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 332
MaeI CTAG 5 cut(s) 57, 135, 222, 248, 626
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 157
MalI GATC 7 cut(s) 74, 226, 230, 369, 498, 525, 534
MboI GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
MboII GAAGA 4 cut(s) 23, 86, 343, 541
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 523
MluCI AATT 4 cut(s) 42, 200, 273, 294
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 237
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 4 cut(s) 173, 252, 378, 414
MspR9I CCNGG 1 cut(s) 415
MunI CAATTG 1 cut(s) 294
MvnI CGCG 2 cut(s) 36, 356
MwoI GCNNNNNNNGC 1 cut(s) 35
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 1 cut(s) 415
NcoI CCATGG 1 cut(s) 491
NdeII GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 495
NlaIV GGNNCC 1 cut(s) 479
OliI CACNNNNGTG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 316, 634
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 7 cut(s) 72, 224, 228, 367, 496, 523, 532
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 415
SetI ASST 6 cut(s) 67, 164, 285, 306, 591, 631
SfaNI GCATC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 4 cut(s) 42, 200, 273, 294
SsiI CCGC 2 cut(s) 153, 375
SspMI CTAG 5 cut(s) 57, 135, 222, 248, 626
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 3 cut(s) 23, 403, 443
TaiI ACGT 1 cut(s) 591
TaqI TCGA 5 cut(s) 227, 370, 422, 432, 632
TasI AATT 4 cut(s) 42, 200, 273, 294
TfiI GAWTC 2 cut(s) 316, 634
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 448
TseI GCWGC 1 cut(s) 410
TspGWI ACGGA 4 cut(s) 68, 333, 353, 384
TspRI CASTG 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
XspI CTAG 5 cut(s) 57, 135, 222, 248, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.