Prupe.3G021000_v2.0.a1

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014396
Physical Location & Seq
Reverse (-)
1531126 .. 1534053
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G021000.1

Sequence Viewer

Length: 675 bp
ATGGCTTCAGTCATGACTTCTCATGCTATCCTCTTCCAAACCTCAAACCCAATCCGACCCAAACCCAAGCTCAAACCTTTCTGCACCCCTGCTCTCAAATTCAGCCCCAACCCTAACCTTAACCCCAACAAAATACTCAAATTTTCCCTCAGACCCCTCTGCGCCTCTCTCACCACAAACCTCCAAACCCTAAATACCCAAATCCCATCTCAGTCCCCACCACCCCTAGCCCATCTCCCTACTCGGACGCTCACCACCCTCTTCGCCCTAACCCTAGCCGTCGTCCGCAACCTCTCAATTTCACTATTGAAATTCGGATCCCAATTCGGACCCTCCATCGGTTCCGCCGCCGGACCCCTCTTCTTCGCGGCGCTCGGAGACCGCCCGAGCGGCTACTTGAACACGCCGTTGACGGTGGTCGCCGCCGGACTCTCCAAATGGCTCGATATCTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCCAATATTCCTTGGGACCGCCAACCCCTTTCGGCGATTCGGGACCTCTGCGATCCCTATTTGAATCTCTTTCGCAACATAATCCCGCCGATTTTCGATACCTTGGATGTTAGTCCGCTCTTGGCTTTCGCAGTTTTGGGCACGCTGGGATCGATTCTCAACAACAGTAGAGGAATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

225

Amino Acids

24.41

Weight (kDa)

10.15

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 390, 610
AccII CGCG 1 cut(s) 368
AclWI GGATC 4 cut(s) 312, 325, 539, 649
AcsI RAATTY 3 cut(s) 98, 140, 311
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 3 cut(s) 310, 400, 556
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 4 cut(s) 312, 325, 539, 649
Ama87I CYCGRG 1 cut(s) 385
ApoI RAATTY 3 cut(s) 98, 140, 311
AspLEI GCGC 2 cut(s) 164, 373
AspS9I GGNCC 4 cut(s) 329, 353, 508, 535
AsuHPI GGTGA 2 cut(s) 163, 244
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 4 cut(s) 329, 353, 508, 535
BaeGI GKGCMC 1 cut(s) 635
BamHI GGATCC 1 cut(s) 317
BccI CCATC 4 cut(s) 214, 240, 344, 460
BceAI ACGGC 2 cut(s) 263, 391
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 2 cut(s) 227, 275
BfmI CTRYAG 1 cut(s) 451
BfoI RGCGCY 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 348, 369, 391, 423
BlsI GCNGC 4 cut(s) 349, 370, 392, 424
Bme18I GGWCC 4 cut(s) 329, 353, 508, 535
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 4 cut(s) 329, 353, 508, 535
BmiI GGNNCC 7 cut(s) 319, 331, 343, 355, 491, 509, 536
BoxI GACNNNNGTC 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 644
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 503, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 338
BseCI ATCGAT 1 cut(s) 644
BseDI CCNNGG 2 cut(s) 503, 594
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 3 cut(s) 163, 224, 496
BseSI GKGCMC 1 cut(s) 635
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 2 cut(s) 351, 426
BslFI GGGAC 3 cut(s) 199, 521, 548
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 199, 521, 548
Bso31I GGTCTC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 635
Bsp143I GATC 3 cut(s) 317, 544, 641
BspCNI CTCAG 3 cut(s) 162, 223, 495
BspDI ATCGAT 1 cut(s) 644
BspFNI CGCG 1 cut(s) 368
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 7 cut(s) 319, 331, 343, 355, 491, 509, 536
BspPI GGATC 4 cut(s) 312, 325, 539, 649
BspTNI GGTCTC 1 cut(s) 372
BsrBI CCGCTC 2 cut(s) 390, 610
BssECI CCNNGG 2 cut(s) 503, 594
BssMI GATC 3 cut(s) 317, 544, 641
BssT1I CCWWGG 2 cut(s) 503, 594
Bst4CI ACNGT 3 cut(s) 415, 455, 659
Bst6I CTCTTC 3 cut(s) 38, 266, 365
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 3 cut(s) 149, 210, 482
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 2 cut(s) 164, 373
BstKTI GATC 3 cut(s) 320, 547, 644
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 3 cut(s) 317, 544, 641
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstPAI GACNNNNGTC 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 635
BstUI CGCG 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
Bsu15I ATCGAT 1 cut(s) 644
BsuTUI ATCGAT 1 cut(s) 644
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 635
CciI TCATGA 1 cut(s) 12
CfoI GCGC 2 cut(s) 164, 373
Cfr13I GGNCC 4 cut(s) 329, 353, 508, 535
ClaI ATCGAT 1 cut(s) 644
CseI GACGC 1 cut(s) 256
CviAII CATG 2 cut(s) 13, 23
CviJI RGCY 8 cut(s) 5, 70, 105, 230, 278, 393, 442, 617
CviKI_1 RGCY 8 cut(s) 5, 70, 105, 230, 278, 393, 442, 617
DdeI CTNAG 3 cut(s) 149, 210, 482
DpnI GATC 3 cut(s) 319, 546, 643
DpnII GATC 3 cut(s) 317, 544, 641
Eam1104I CTCTTC 3 cut(s) 38, 266, 365
EarI CTCTTC 3 cut(s) 38, 266, 365
EciI GGCGGA 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 503, 594
Eco31I GGTCTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 4 cut(s) 329, 353, 508, 535
Eco88I CYCGRG 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 535
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 503, 594
ErhI CCWWGG 2 cut(s) 503, 594
FaeI CATG 2 cut(s) 16, 26
FaiI YATR 3 cut(s) 14, 24, 572
FaqI GGGAC 3 cut(s) 199, 521, 548
FatI CATG 2 cut(s) 12, 22
FauI CCCGC 1 cut(s) 585
Fnu4HI GCNGC 4 cut(s) 348, 369, 391, 423
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 4 cut(s) 348, 369, 391, 423
FspBI CTAG 2 cut(s) 227, 275
GlaI GCGC 2 cut(s) 163, 372
GluI GCNGC 4 cut(s) 348, 369, 391, 423
GsaI CCCAGC 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 374
HapII CCGG 2 cut(s) 351, 426
HgaI GACGC 1 cut(s) 256
HhaI GCGC 2 cut(s) 164, 373
Hin1II CATG 2 cut(s) 16, 26
Hin6I GCGC 2 cut(s) 162, 371
HinP1I GCGC 2 cut(s) 162, 371
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 4 cut(s) 429, 529, 556, 646
HpaII CCGG 2 cut(s) 351, 426
HphI GGTGA 2 cut(s) 163, 244
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 6 cut(s) 56, 152, 246, 317, 329, 377
Hpy188III TCNNGA 2 cut(s) 13, 533
Hpy8I GTNNAC 1 cut(s) 411
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 415, 455, 659
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 3 cut(s) 149, 210, 482
Hsp92II CATG 2 cut(s) 16, 26
HspAI GCGC 2 cut(s) 162, 371
Kzo9I GATC 3 cut(s) 317, 544, 641
LpnPI CCDG 4 cut(s) 102, 364, 439, 623
MaeI CTAG 2 cut(s) 227, 275
MalI GATC 3 cut(s) 319, 546, 643
MbiI CCGCTC 2 cut(s) 390, 610
MboI GATC 3 cut(s) 317, 544, 641
MboII GAAGA 4 cut(s) 25, 253, 352, 355
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 5 cut(s) 98, 140, 297, 311, 323
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 79
MseI TTAA 1 cut(s) 120
MspI CCGG 2 cut(s) 351, 426
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 3 cut(s) 317, 544, 641
NlaIII CATG 2 cut(s) 16, 26
NlaIV GGNNCC 7 cut(s) 319, 331, 343, 355, 491, 509, 536
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PfeI GAWTC 3 cut(s) 529, 556, 646
PkrI GCNGC 4 cut(s) 349, 370, 392, 424
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PpuMI RGGWCCY 1 cut(s) 535
PshAI GACNNNNGTC 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 637
PspN4I GGNNCC 7 cut(s) 319, 331, 343, 355, 491, 509, 536
PspPI GGNCC 4 cut(s) 329, 353, 508, 535
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 1 cut(s) 317
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 4 cut(s) 348, 369, 391, 423
Sau3AI GATC 3 cut(s) 317, 544, 641
Sau96I GGNCC 4 cut(s) 329, 353, 508, 535
SchI GAGTC 1 cut(s) 423
SduI GDGCHC 1 cut(s) 635
SetI ASST 8 cut(s) 44, 72, 79, 120, 183, 294, 540, 596
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 4 cut(s) 329, 353, 508, 535
Sse9I AATT 5 cut(s) 98, 140, 297, 311, 323
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 227, 275
StyI CCWWGG 2 cut(s) 503, 594
TaaI ACNGT 3 cut(s) 415, 455, 659
TaqI TCGA 3 cut(s) 444, 588, 644
TasI AATT 5 cut(s) 98, 140, 297, 311, 323
TauI GCSGC 4 cut(s) 350, 371, 393, 425
TfiI GAWTC 3 cut(s) 529, 556, 646
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 460
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 4 cut(s) 329, 353, 508, 535
XapI RAATTY 3 cut(s) 98, 140, 311
XspI CTAG 2 cut(s) 227, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.