Rorug02G0413600

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014396
Physical Location & Seq
Reverse (-)
52917931 .. 52941706
23776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0413600.1

Sequence Viewer

Length: 942 bp
ATGTTGCTAGTTCTACTCTTCTTCCTCCTAGTCACACTTGTAGCAACAACTCAAGCTTCAAATGGAGCTATATCCCACCAGATTCATCTCCTCAGGCCACAAACTGGTTCCGGTGGGAGGCACGTCCCCGGCATTTCATGCCTGAGCTGGAGACTTGGTGTTGAAACCCACAACATCGTTGGCTGGACGACTGTTCCAGCTGTCTGTGAAGGCTATGTAGGGCACTACATGCTAGGCCACCAGTATAGACAGGACTCGAGAGCTGTTACTAATGAGGCTTTGCTCTACGCTAAGAGCCTGAACCTTACAAAGGACGGCAAGAACTTGTGGGTCTTCGACATCGATGAGACTTCTCTCTCCAATCTGCCTTATTATTCTCACCATGGATTCGGAGTAGAGGTATATAATTCCACTTCATTCGACGCCTGGGTCTTAGAAGGCACGGCCCCAGCTTTGCCTGAGAGTCTTAAACTGTACAATAAGTTATTGGCTCTTGGAATTAAGGTAGCATTCATAACTGGAAGAGGAATATCTCGAAGAAGTGTCACAGAAATCAATCTCAAATACGTTGGATATCACACATGGGAAAAGCTTGTGCTAAAAGATTCATCTTATTCTGGTAACACAGCAGTGGTGTATAAATCAGCTGAGAGAAAGAAGCTTGAAGAGAGTGGATATAGAATAATTGGAAACATTGGTGATCAATGGAGTGATCTAATGGGGACAAACATCGGCAATAGAACCTTCAAGTTGCCTGATCCAATTGTCTTGGTCGTGTTTTTCATATGCATAAATTCTCTTGAGATCAATAGAGAGGCTGTGAAGAAAGAAGAGCGATATTTGGCGATCGTTCAAGTGAAGAAGAAGGTCAAGATTCAAGACAAGAACCACTCTAGTGAGTCTAGAGATTGTAGCCGCGTAGAGAGCTATATGTGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

313

Amino Acids

35.12

Weight (kDa)

8.93

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 255 6.7e-80 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 104
AccII CGCG 1 cut(s) 918
AciI CCGC 1 cut(s) 916
AclWI GGATC 1 cut(s) 752
AcsI RAATTY 1 cut(s) 793
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 3 cut(s) 104, 117, 310
AgsI TTSAA 6 cut(s) 60, 164, 665, 748, 854, 878
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 425
AleI CACNNNNGTG 2 cut(s) 629, 894
Alw26I GTCTC 2 cut(s) 145, 341
AlwI GGATC 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 3 cut(s) 95, 235, 444
ApoI RAATTY 1 cut(s) 793
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 371, 710
AvaI CYCGRG 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 325
BceAI ACGGC 2 cut(s) 331, 459
BciT130I CCWGG 1 cut(s) 427
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 145, 341
BfaI CTAG 5 cut(s) 8, 29, 233, 894, 903
BisI GCNGC 1 cut(s) 916
BlsI GCNGC 1 cut(s) 917
Bme1390I CCNGG 2 cut(s) 129, 427
BmeT110I CYCGRG 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 109, 447
BmrFI CCNGG 2 cut(s) 129, 427
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 36, 821
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 127, 382, 426
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 117, 310
Bse1I ACTGG 3 cut(s) 109, 241, 523
Bse21I CCTNAGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 427
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 127, 382, 426
BseLI CCNNNNNNNGG 3 cut(s) 104, 117, 310
BseMII CTCAG 4 cut(s) 106, 134, 450, 639
BseNI ACTGG 3 cut(s) 109, 241, 523
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 918
Bsh1285I CGRYCG 1 cut(s) 849
BshFI GGCC 3 cut(s) 97, 237, 446
BshVI ATCGAT 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 849
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 111, 129
BslFI GGGAC 2 cut(s) 110, 736
BslI CCNNNNNNNGG 3 cut(s) 104, 117, 310
BsmAI GTCTC 2 cut(s) 145, 341
BsmFI GGGAC 2 cut(s) 110, 736
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 3 cut(s) 97, 237, 446
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 225
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 5 cut(s) 700, 712, 757, 804, 846
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 1 cut(s) 916
BspANI GGCC 3 cut(s) 97, 237, 446
BspCNI CTCAG 4 cut(s) 105, 135, 451, 640
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 918
BspLI GGNNCC 2 cut(s) 109, 447
BspPI GGATC 1 cut(s) 752
BspQI GCTCTTC 1 cut(s) 825
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 3 cut(s) 109, 241, 523
BssECI CCNNGG 3 cut(s) 127, 382, 426
BssMI GATC 5 cut(s) 700, 712, 757, 804, 846
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 193, 474
Bst6I CTCTTC 4 cut(s) 23, 517, 660, 825
BstACI GRCGYC 1 cut(s) 423
BstAPI GCANNNNNTGC 2 cut(s) 138, 229
BstAUI TGTACA 1 cut(s) 474
BstDEI CTNAG 6 cut(s) 92, 143, 291, 433, 459, 648
BstDSI CCRYGG 1 cut(s) 382
BstENI CCTNNNNNAGG 1 cut(s) 308
BstFNI CGCG 1 cut(s) 918
BstKTI GATC 5 cut(s) 703, 715, 760, 807, 849
BstMAI GTCTC 2 cut(s) 145, 341
BstMBI GATC 5 cut(s) 700, 712, 757, 804, 846
BstMCI CGRYCG 1 cut(s) 849
BstMWI GCNNNNNNNGC 3 cut(s) 138, 229, 924
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 127, 425
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 918
BstV2I GAAGAC 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 3 cut(s) 97, 237, 446
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 382
BtrI CACGTC 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
Cfr13I GGNCC 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 475
CviAII CATG 4 cut(s) 138, 229, 383, 582
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 6 cut(s) 92, 143, 291, 433, 459, 648
DpnI GATC 5 cut(s) 702, 714, 759, 806, 848
DpnII GATC 5 cut(s) 700, 712, 757, 804, 846
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
Eam1104I CTCTTC 4 cut(s) 23, 517, 660, 825
EarI CTCTTC 4 cut(s) 23, 517, 660, 825
Eco130I CCWWGG 1 cut(s) 382
Eco32I GATATC 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 425
EcoRV GATATC 1 cut(s) 575
EcoT14I CCWWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 791
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 4 cut(s) 141, 232, 386, 585
FaqI GGGAC 2 cut(s) 110, 736
FatI CATG 4 cut(s) 137, 228, 382, 581
FauNDI CATATG 1 cut(s) 785
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 1 cut(s) 916
Fsp4HI GCNGC 1 cut(s) 916
FspBI CTAG 5 cut(s) 8, 29, 233, 894, 903
GluI GCNGC 1 cut(s) 916
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 3 cut(s) 97, 237, 446
HapII CCGG 2 cut(s) 111, 129
HgaI GACGC 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 4 cut(s) 141, 232, 386, 585
HindIII AAGCTT 3 cut(s) 54, 590, 659
HinfI GANTC 7 cut(s) 82, 254, 387, 463, 605, 874, 899
HpaII CCGG 2 cut(s) 111, 129
HphI GGTGA 2 cut(s) 371, 710
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 6 cut(s) 258, 534, 800, 871, 878, 903
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 4 cut(s) 203, 431, 754, 859
HpyCH4III ACNGT 2 cut(s) 193, 474
HpyCH4IV ACGT 2 cut(s) 123, 567
HpyCH4V TGCA 1 cut(s) 789
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 229, 924
HpyF3I CTNAG 6 cut(s) 92, 143, 291, 433, 459, 648
HpySE526I ACGT 2 cut(s) 123, 567
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 4 cut(s) 141, 232, 386, 585
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 5 cut(s) 700, 712, 757, 804, 846
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 1 cut(s) 65
MaeI CTAG 5 cut(s) 8, 29, 233, 894, 903
MaeII ACGT 2 cut(s) 123, 567
MaeIII GTNAC 4 cut(s) 31, 265, 544, 620
MalI GATC 5 cut(s) 702, 714, 759, 806, 848
MboI GATC 5 cut(s) 700, 712, 757, 804, 846
MfeI CAATTG 1 cut(s) 762
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 5 cut(s) 406, 498, 684, 762, 793
MlyI GAGTC 3 cut(s) 248, 472, 908
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 7 cut(s) 35, 101, 111, 268, 391, 518, 808
Mph1103I ATGCAT 1 cut(s) 791
MseI TTAA 2 cut(s) 468, 501
MslI CAYNNNNRTG 2 cut(s) 629, 894
MspA1I CMGCKG 2 cut(s) 200, 647
MspI CCGG 2 cut(s) 111, 129
MspR9I CCNGG 2 cut(s) 129, 427
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 1 cut(s) 918
MwoI GCNNNNNNNGC 3 cut(s) 138, 229, 924
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 382
NdeI CATATG 1 cut(s) 785
NdeII GATC 5 cut(s) 700, 712, 757, 804, 846
NlaIII CATG 4 cut(s) 141, 232, 386, 585
NlaIV GGNNCC 2 cut(s) 109, 447
NmuCI GTSAC 2 cut(s) 31, 544
NsiI ATGCAT 1 cut(s) 791
NspI RCATGY 1 cut(s) 232
OliI CACNNNNGTG 2 cut(s) 629, 894
PaeR7I CTCGAG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 825
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 82, 387, 605, 874
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 917
Ple19I CGATCG 1 cut(s) 849
PleI GAGTC 3 cut(s) 248, 471, 907
PpsI GAGTC 3 cut(s) 248, 471, 907
Psp6I CCWGG 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 109, 447
PspPI GGNCC 1 cut(s) 445
PvuI CGATCG 1 cut(s) 849
PvuII CAGCTG 2 cut(s) 200, 647
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 2 cut(s) 629, 894
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 2 cut(s) 468, 501
SatI GCNGC 1 cut(s) 916
Sau3AI GATC 5 cut(s) 700, 712, 757, 804, 846
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 3 cut(s) 248, 472, 908
ScrFI CCNGG 2 cut(s) 129, 427
SduI GDGCHC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 629, 894
SmlI CTYRAG 3 cut(s) 51, 256, 800
SmoI CTYRAG 3 cut(s) 51, 256, 800
Sse9I AATT 5 cut(s) 406, 498, 684, 762, 793
SsiI CCGC 1 cut(s) 916
SspMI CTAG 5 cut(s) 8, 29, 233, 894, 903
StyD4I CCNGG 2 cut(s) 127, 425
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 193, 474
TaiI ACGT 2 cut(s) 126, 570
TaqI TCGA 5 cut(s) 257, 336, 342, 420, 535
TasI AATT 5 cut(s) 406, 498, 684, 762, 793
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 918
TfiI GAWTC 4 cut(s) 82, 387, 605, 874
Tru1I TTAA 2 cut(s) 468, 501
Tru9I TTAA 2 cut(s) 468, 501
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 2 cut(s) 31, 544
Tsp45I GTSAC 2 cut(s) 31, 544
TspDTI ATGAA 6 cut(s) 74, 126, 405, 502, 597, 772
TspRI CASTG 1 cut(s) 636
Van91I CCANNNNNTGG 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 793
XbaI TCTAGA 1 cut(s) 902
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 256
XspI CTAG 5 cut(s) 8, 29, 233, 894, 903
Zsp2I ATGCAT 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.