Rh2BG485800

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014396
Physical Location & Seq
Forward (+)
68598577 .. 68602007
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG485800.1

Sequence Viewer

Length: 675 bp
ATGGCATCAGTCATGGTTTCCCAGGCTCTCTTCTCCCAAACCCCAATCCTAATCAGACCCCCCACCCGCACCCCCAAATTCAAATCCCTCTCCTCTCCCTCTCCCTCCCTCGTCCACATTCGCACTCCCAATCCCAAACTCCCCAACCTCCGCCTCTCTCTCCGCCGACCCCTCTGCATCTCCGCCACCACCCAAACCCAAACCGTAACCCTAACCCCACCGCCGCCGCCTTCTCCGCTCTCCCACGCCCCCACTCGCACTCTCACCACCCTCTTCGCCGTAACCCTAGCCGCCTTCCGCACCGTCTTCAAATTCGCCTCCCAGCACGCCCCCGCCGTGGCCTCCTCCGCCGGACCTCTCTTCTTCGCCGCCCTGGGTGACCGCCCCAGCGGGTACCTCAACACTCCCCTCACGGTCGTCGCCGCCGGGCTCTCCAAGTGGCTGGACATCTACAGCGGCGTTCTCATGGTTCGGGTTCTGCTGAGCTGGTTCCCCAATATTCCCTGGGACCGGCAGCCGCTCTCGGCCATCCGGGACCTCTGCGATCCCTACCTCAACCTCTTCCGCAACATCATTCCTCCGATTTTCGACACCTTGGACGTGAGCCCCCTCCTGGCTTTCGCAGTGTTGGGCACGCTTGGCTCGATCCTCAACAACAGTAGGGGAATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

224

Amino Acids

24.37

Weight (kDa)

10.9

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 148 - 216 1.3e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 393
AccBSI CCGCTC 2 cut(s) 238, 520
AclWI GGATC 2 cut(s) 539, 640
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 2 cut(s) 77, 311
AfaI GTAC 2 cut(s) 395, 671
AfiI CCNNNNNNNGG 3 cut(s) 337, 510, 613
AgsI TTSAA 2 cut(s) 82, 310
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 4 cut(s) 21, 372, 503, 612
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
AlwI GGATC 2 cut(s) 539, 640
AoxI GGCC 2 cut(s) 339, 525
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 2 cut(s) 77, 311
Asp718I GGTACC 1 cut(s) 393
AspS9I GGNCC 3 cut(s) 353, 508, 535
AsuC2I CCSGG 2 cut(s) 427, 533
AsuHPI GGTGA 2 cut(s) 256, 389
AvaII GGWCC 3 cut(s) 353, 508, 535
BaeGI GKGCMC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 393
BanII GRGCYC 2 cut(s) 432, 608
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 536
BceAI ACGGC 2 cut(s) 263, 320
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 4 cut(s) 23, 374, 505, 614
BcnI CCSGG 2 cut(s) 427, 533
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 451
BisI GCNGC 8 cut(s) 224, 227, 291, 369, 423, 457, 515, 518
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 8 cut(s) 225, 228, 292, 370, 424, 458, 516, 519
Bme1390I CCNGG 6 cut(s) 23, 374, 427, 505, 533, 614
Bme18I GGWCC 3 cut(s) 353, 508, 535
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 3 cut(s) 353, 508, 535
BmiI GGNNCC 4 cut(s) 395, 491, 509, 536
BmrFI CCNGG 6 cut(s) 23, 374, 427, 505, 533, 614
BmsI GCATC 2 cut(s) 14, 186
BpiI GAAGAC 1 cut(s) 298
Bpu1102I GCTNAGC 1 cut(s) 482
BpuMI CCSGG 2 cut(s) 427, 533
BsaJI CCNNGG 7 cut(s) 21, 336, 372, 373, 503, 504, 594
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 510, 613
Bse118I RCCGGY 1 cut(s) 510
BseBI CCWGG 4 cut(s) 23, 374, 505, 614
BseDI CCNNGG 7 cut(s) 21, 336, 372, 373, 503, 504, 594
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 337, 510, 613
BseMII CTCAG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 82, 334
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 2 cut(s) 321, 386
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 2 cut(s) 341, 527
BshNI GGYRCC 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 417
BsiSI CCGG 4 cut(s) 351, 426, 511, 532
BslFI GGGAC 2 cut(s) 521, 548
BslI CCNNNNNNNGG 3 cut(s) 337, 510, 613
BsmFI GGGAC 2 cut(s) 521, 548
BsnI GGCC 2 cut(s) 341, 527
Bsp1286I GDGCHC 3 cut(s) 432, 608, 635
Bsp143I GATC 2 cut(s) 544, 645
Bsp1720I GCTNAGC 1 cut(s) 482
BspANI GGCC 2 cut(s) 341, 527
BspCNI CTCAG 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 395, 491, 509, 536
BspPI GGATC 2 cut(s) 539, 640
BspT107I GGYRCC 1 cut(s) 393
BsrBI CCGCTC 2 cut(s) 238, 520
BsrFI RCCGGY 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 7 cut(s) 21, 336, 372, 373, 503, 504, 594
BssMI GATC 2 cut(s) 544, 645
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 4 cut(s) 23, 374, 505, 614
Bst4CI ACNGT 4 cut(s) 205, 304, 415, 659
Bst6I CTCTTC 4 cut(s) 35, 278, 365, 566
BstC8I GCNNGC 2 cut(s) 327, 635
BstDEI CTNAG 1 cut(s) 482
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 377
BstF5I GGATG 1 cut(s) 528
BstKTI GATC 2 cut(s) 547, 648
BstMBI GATC 2 cut(s) 544, 645
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 235, 347, 639
BstNI CCWGG 4 cut(s) 23, 374, 505, 614
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 6 cut(s) 21, 372, 425, 503, 531, 612
BstSFI CTRYAG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 442
BsuRI GGCC 2 cut(s) 341, 527
BtgI CCRYGG 1 cut(s) 336
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 327, 635
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 353, 508, 535
Csp6I GTAC 2 cut(s) 394, 670
CviAII CATG 2 cut(s) 13, 466
CviQI GTAC 2 cut(s) 394, 670
DdeI CTNAG 1 cut(s) 482
DpnI GATC 2 cut(s) 546, 647
DpnII GATC 2 cut(s) 544, 645
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 4 cut(s) 35, 278, 365, 566
EarI CTCTTC 4 cut(s) 35, 278, 365, 566
EciI GGCGGA 4 cut(s) 140, 152, 172, 337
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 2 cut(s) 432, 608
Eco47I GGWCC 3 cut(s) 353, 508, 535
Eco91I GGTNACC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 4 cut(s) 21, 372, 503, 612
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 432, 608
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 2 cut(s) 16, 469
FaiI YATR 2 cut(s) 14, 467
FaqI GGGAC 2 cut(s) 521, 548
FatI CATG 2 cut(s) 12, 465
FauI CCCGC 3 cut(s) 74, 340, 383
Fnu4HI GCNGC 8 cut(s) 224, 227, 291, 369, 423, 457, 515, 518
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 2 cut(s) 432, 608
Fsp4HI GCNGC 8 cut(s) 224, 227, 291, 369, 423, 457, 515, 518
FspBI CTAG 1 cut(s) 287
GluI GCNGC 8 cut(s) 224, 227, 291, 369, 423, 457, 515, 518
GsaI CCCAGC 2 cut(s) 325, 390
HaeIII GGCC 2 cut(s) 341, 527
HapII CCGG 4 cut(s) 351, 426, 511, 532
Hin1II CATG 2 cut(s) 16, 469
HpaII CCGG 4 cut(s) 351, 426, 511, 532
HphI GGTGA 2 cut(s) 256, 389
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 56, 582
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 2 cut(s) 240, 304
HpyCH4III ACNGT 4 cut(s) 205, 304, 415, 659
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 347, 639
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 2 cut(s) 16, 469
KpnI GGTACC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 544, 645
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 2 cut(s) 14, 186
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 3 cut(s) 205, 280, 377
MalI GATC 2 cut(s) 546, 647
MbiI CCGCTC 2 cut(s) 238, 520
MboI GATC 2 cut(s) 544, 645
MboII GAAGA 6 cut(s) 22, 265, 298, 352, 355, 553
MhlI GDGCHC 3 cut(s) 432, 608, 635
MluCI AATT 2 cut(s) 77, 311
MspA1I CMGCKG 2 cut(s) 390, 456
MspI CCGG 4 cut(s) 351, 426, 511, 532
MspR9I CCNGG 6 cut(s) 23, 374, 427, 505, 533, 614
MvaI CCWGG 4 cut(s) 23, 374, 505, 614
MwoI GCNNNNNNNGC 3 cut(s) 235, 347, 639
NciI CCSGG 2 cut(s) 427, 533
NdeII GATC 2 cut(s) 544, 645
NlaIII CATG 2 cut(s) 16, 469
NlaIV GGNNCC 4 cut(s) 395, 491, 509, 536
NmeAIII GCCGAG 1 cut(s) 503
NmuCI GTSAC 1 cut(s) 377
PasI CCCWGGG 2 cut(s) 373, 504
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 641
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 8 cut(s) 225, 228, 292, 370, 424, 458, 516, 519
PpuMI RGGWCCY 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 4 cut(s) 21, 372, 503, 612
PspEI GGTNACC 1 cut(s) 377
PspFI CCCAGC 2 cut(s) 321, 386
PspGI CCWGG 4 cut(s) 21, 372, 503, 612
PspN4I GGNNCC 4 cut(s) 395, 491, 509, 536
PspPI GGNCC 3 cut(s) 353, 508, 535
PspPPI RGGWCCY 1 cut(s) 535
RsaI GTAC 2 cut(s) 395, 671
RsaNI GTAC 2 cut(s) 394, 670
SatI GCNGC 8 cut(s) 224, 227, 291, 369, 423, 457, 515, 518
Sau3AI GATC 2 cut(s) 544, 645
Sau96I GGNCC 3 cut(s) 353, 508, 535
ScrFI CCNGG 6 cut(s) 23, 374, 427, 505, 533, 614
SduI GDGCHC 3 cut(s) 432, 608, 635
SetI ASST 9 cut(s) 150, 358, 399, 488, 540, 555, 561, 596, 603
SfaNI GCATC 2 cut(s) 14, 186
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 3 cut(s) 353, 508, 535
Sse9I AATT 2 cut(s) 77, 311
SspI AATATT 1 cut(s) 499
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 6 cut(s) 21, 372, 425, 503, 531, 612
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 4 cut(s) 205, 304, 415, 659
TaiI ACGT 1 cut(s) 603
TaqI TCGA 2 cut(s) 588, 644
TasI AATT 2 cut(s) 77, 311
TatI WGTACW 1 cut(s) 669
TauI GCSGC 7 cut(s) 226, 229, 293, 371, 425, 459, 520
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 377
TspRI CASTG 1 cut(s) 630
VpaK11BI GGWCC 3 cut(s) 353, 508, 535
XapI RAATTY 2 cut(s) 77, 311
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.