Rh2CG459900

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014396
Physical Location & Seq
Forward (+)
62291038 .. 62291706
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG459900.1

Sequence Viewer

Length: 669 bp
ATGGCATCAGTCATGGTTTCCCAGGCTCTCTTCTCCCAAACCCCAATCCTAATCAGACCCCCCACCCGCACCCGCACCCCCAAATTCAAATCCTTCTCCTCTCCCTCTCCCTCCCTCGTCCACATTCGCACTCCCAATCCCAAACTCCCCAACCTCCGCCTCTCTCTCCGCCGACCCCTCTGCATCTCCGCCACCACCCAAACCCTAACCCCACCGCCGCCGCCTTCTCCGCTCTCCCGCGCCCCCACTCGCACTCTCACCACCCTCTTCGCCGTAACCCTAGCCGCCTTCCGCACCGTCTTCAAATTCGCCTCCCAACACGCCCCCGCCGTCGCCTCCTCCGCCGGACCTCTCTTCTTCGCCGCCCTCGGTGACCGGCCCAGCGGGTACCTCAACACTCCCCTCACGGTCGTCGCCGCCGGGCTCTCCAAGTGGCTGGACATCTACAGCGGCGTTCTCATGGTTCGGGTTCTGCTCAGCTGGTTCCCCAATATTCCCTGGGACCGGCAGCCGCTCTCGGCCATCCGGGACCTCTGTGATCCCTACCTCAACCTCTTCCGCAACATCATTCCTCCGATTTTCGACACCTTGGACGTGAGCCCCCTCCTGGCTTTCGCAGTGTTGGGCACGCTTGGCTCGATCCTCAACAACAGTAGGGGAATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

222

Amino Acids

24.25

Weight (kDa)

11.26

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 146 - 214 1.3e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 387
AccBSI CCGCTC 2 cut(s) 232, 514
AccII CGCG 1 cut(s) 240
AclWI GGATC 2 cut(s) 533, 634
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 2 cut(s) 83, 305
AfaI GTAC 2 cut(s) 389, 665
AfiI CCNNNNNNNGG 2 cut(s) 504, 607
AgsI TTSAA 2 cut(s) 88, 304
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 3 cut(s) 21, 497, 606
AluBI AGCT 1 cut(s) 480
AluI AGCT 1 cut(s) 480
AlwI GGATC 2 cut(s) 533, 634
AoxI GGCC 2 cut(s) 377, 519
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 2 cut(s) 83, 305
Asp718I GGTACC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 4 cut(s) 347, 378, 502, 529
AsuC2I CCSGG 2 cut(s) 421, 527
AsuHPI GGTGA 2 cut(s) 250, 383
AvaII GGWCC 3 cut(s) 347, 502, 529
BaeGI GKGCMC 1 cut(s) 629
BanI GGYRCC 1 cut(s) 387
BanII GRGCYC 2 cut(s) 426, 602
BbsI GAAGAC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 530
BceAI ACGGC 2 cut(s) 257, 314
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 3 cut(s) 23, 499, 608
BcnI CCSGG 2 cut(s) 421, 527
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 8 cut(s) 218, 221, 285, 363, 417, 451, 509, 512
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 8 cut(s) 219, 222, 286, 364, 418, 452, 510, 513
Bme1390I CCNGG 5 cut(s) 23, 421, 499, 527, 608
Bme18I GGWCC 3 cut(s) 347, 502, 529
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 4 cut(s) 347, 378, 502, 529
BmiI GGNNCC 4 cut(s) 389, 485, 503, 530
BmrFI CCNGG 5 cut(s) 23, 421, 499, 527, 608
BmsI GCATC 2 cut(s) 14, 192
BpiI GAAGAC 1 cut(s) 292
Bpu1102I GCTNAGC 1 cut(s) 476
BpuMI CCSGG 2 cut(s) 421, 527
BsaJI CCNNGG 5 cut(s) 21, 367, 497, 498, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 607
Bse118I RCCGGY 2 cut(s) 375, 504
BseBI CCWGG 3 cut(s) 23, 499, 608
BseDI CCNNGG 5 cut(s) 21, 367, 497, 498, 588
BseGI GGATG 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 504, 607
BseMII CTCAG 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 88, 328
BseSI GKGCMC 1 cut(s) 629
BseXI GCAGC 1 cut(s) 520
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 2 cut(s) 379, 521
BshNI GGYRCC 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 411
BsiSI CCGG 5 cut(s) 345, 376, 420, 505, 526
BslFI GGGAC 2 cut(s) 515, 542
BslI CCNNNNNNNGG 2 cut(s) 504, 607
BsmFI GGGAC 2 cut(s) 515, 542
BsnI GGCC 2 cut(s) 379, 521
Bsp1286I GDGCHC 3 cut(s) 426, 602, 629
Bsp143I GATC 2 cut(s) 538, 639
Bsp1720I GCTNAGC 1 cut(s) 476
BspANI GGCC 2 cut(s) 379, 521
BspCNI CTCAG 1 cut(s) 489
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 4 cut(s) 389, 485, 503, 530
BspPI GGATC 2 cut(s) 533, 634
BspT107I GGYRCC 1 cut(s) 387
BsrBI CCGCTC 2 cut(s) 232, 514
BsrFI RCCGGY 2 cut(s) 375, 504
BssAI RCCGGY 2 cut(s) 375, 504
BssECI CCNNGG 5 cut(s) 21, 367, 497, 498, 588
BssMI GATC 2 cut(s) 538, 639
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 3 cut(s) 23, 499, 608
Bst4CI ACNGT 3 cut(s) 298, 409, 653
Bst6I CTCTTC 4 cut(s) 35, 272, 359, 560
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 1 cut(s) 476
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 1 cut(s) 522
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 2 cut(s) 541, 642
BstMBI GATC 2 cut(s) 538, 639
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 3 cut(s) 229, 341, 633
BstNI CCWGG 3 cut(s) 23, 499, 608
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 5 cut(s) 21, 419, 497, 525, 606
BstSFI CTRYAG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 629
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 436
BsuRI GGCC 2 cut(s) 379, 521
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 1 cut(s) 629
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 2 cut(s) 375, 504
Cfr13I GGNCC 4 cut(s) 347, 378, 502, 529
Csp6I GTAC 2 cut(s) 388, 664
CviAII CATG 2 cut(s) 13, 460
CviQI GTAC 2 cut(s) 388, 664
DdeI CTNAG 1 cut(s) 476
DpnI GATC 2 cut(s) 540, 641
DpnII GATC 2 cut(s) 538, 639
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 4 cut(s) 35, 272, 359, 560
EarI CTCTTC 4 cut(s) 35, 272, 359, 560
EciI GGCGGA 4 cut(s) 146, 158, 178, 331
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 426, 602
Eco47I GGWCC 3 cut(s) 347, 502, 529
Eco91I GGTNACC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 529
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 21, 497, 606
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 2 cut(s) 426, 602
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 2 cut(s) 16, 463
FaiI YATR 2 cut(s) 14, 461
FaqI GGGAC 2 cut(s) 515, 542
FatI CATG 2 cut(s) 12, 459
FauI CCCGC 5 cut(s) 74, 80, 245, 334, 377
Fnu4HI GCNGC 8 cut(s) 218, 221, 285, 363, 417, 451, 509, 512
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 2 cut(s) 426, 602
Fsp4HI GCNGC 8 cut(s) 218, 221, 285, 363, 417, 451, 509, 512
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 241
GluI GCNGC 8 cut(s) 218, 221, 285, 363, 417, 451, 509, 512
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 2 cut(s) 379, 521
HapII CCGG 5 cut(s) 345, 376, 420, 505, 526
HhaI GCGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 16, 463
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HpaII CCGG 5 cut(s) 345, 376, 420, 505, 526
HphI GGTGA 2 cut(s) 250, 383
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 56, 576
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 335, 416
HpyAV CCTTC 3 cut(s) 103, 234, 298
HpyCH4III ACNGT 3 cut(s) 298, 409, 653
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 341, 633
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 2 cut(s) 16, 463
HspAI GCGC 1 cut(s) 240
KpnI GGTACC 1 cut(s) 391
Kzo9I GATC 2 cut(s) 538, 639
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 2 cut(s) 14, 192
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 274, 371
MalI GATC 2 cut(s) 540, 641
MbiI CCGCTC 2 cut(s) 232, 514
MboI GATC 2 cut(s) 538, 639
MboII GAAGA 6 cut(s) 22, 259, 292, 346, 349, 547
MhlI GDGCHC 3 cut(s) 426, 602, 629
MluCI AATT 2 cut(s) 83, 305
MspA1I CMGCKG 3 cut(s) 384, 450, 480
MspI CCGG 5 cut(s) 345, 376, 420, 505, 526
MspR9I CCNGG 5 cut(s) 23, 421, 499, 527, 608
MvaI CCWGG 3 cut(s) 23, 499, 608
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 229, 341, 633
NciI CCSGG 2 cut(s) 421, 527
NdeII GATC 2 cut(s) 538, 639
NlaIII CATG 2 cut(s) 16, 463
NlaIV GGNNCC 4 cut(s) 389, 485, 503, 530
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 371
PasI CCCWGGG 1 cut(s) 498
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 635
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 8 cut(s) 219, 222, 286, 364, 418, 452, 510, 513
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 21, 497, 606
PspEI GGTNACC 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 3 cut(s) 21, 497, 606
PspN4I GGNNCC 4 cut(s) 389, 485, 503, 530
PspPI GGNCC 4 cut(s) 347, 378, 502, 529
PspPPI RGGWCCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 480
RsaI GTAC 2 cut(s) 389, 665
RsaNI GTAC 2 cut(s) 388, 664
SatI GCNGC 8 cut(s) 218, 221, 285, 363, 417, 451, 509, 512
Sau3AI GATC 2 cut(s) 538, 639
Sau96I GGNCC 4 cut(s) 347, 378, 502, 529
ScrFI CCNGG 5 cut(s) 23, 421, 499, 527, 608
SduI GDGCHC 3 cut(s) 426, 602, 629
SetI ASST 9 cut(s) 156, 352, 393, 482, 534, 549, 555, 590, 597
SfaNI GCATC 2 cut(s) 14, 192
SfcI CTRYAG 1 cut(s) 445
SinI GGWCC 3 cut(s) 347, 502, 529
Sse9I AATT 2 cut(s) 83, 305
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 5 cut(s) 21, 419, 497, 525, 606
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 3 cut(s) 298, 409, 653
TaiI ACGT 1 cut(s) 597
TaqI TCGA 2 cut(s) 582, 638
TasI AATT 2 cut(s) 83, 305
TatI WGTACW 1 cut(s) 663
TauI GCSGC 7 cut(s) 220, 223, 287, 365, 419, 453, 514
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 371
TspRI CASTG 1 cut(s) 624
VpaK11BI GGWCC 3 cut(s) 347, 502, 529
XapI RAATTY 2 cut(s) 83, 305
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.