pycom17g15710

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014396
Physical Location & Seq
Forward (+)
13713861 .. 13714535
675 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15710.1

Sequence Viewer

Length: 675 bp
ATGGCATCAGTCATGGCGTCTCAAGCTATCTTATTCCCCACCTCAACCCCCATCATACCAAACCCTAAATCCAAACCCTTCTTCTCTCCCACTCCCATTCTCAGATTCAATCCCAAATGCTACACCAACCCAATCCCCAAACTCTCCCTCAGACCCCTCTGCGCCACTCTCACCACAAACCCCCAAACCCTATTCCCCCAAAACCCATCTCAGCCCCCATCTCCCCTAACCCACCTCCCAACTCGCACCCTCACCACCATCTTCGCCCTAACCCTAGCCGCCGTCCGTAGCCTCTCAATTTCGCTCGTCAAGTTCGGCTCCCAATTCGGACCCTCCATCGGATCCGCCGCCGGGCCCCTCTTCTTTGCGGCTCTCAGGGACCGCCCGAGCGGTTATTTGAATACACCTTTGACGGTTGTCGCTGCCGGACTCTCCAAATGGCTCGATATCTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGCTGGTTCCCTAATATTCCTTGGGACCGTCAACCACTTTCGGCTATTCGGGACCTCTGCGATCCTTATTTGAACCTCTTCCGCAATATAATTCCGCCGATTTTCGATACCTTGGATGTTAGTCCTCTCTTGGCTTTCGCAGTTTTGGGCACCCTCGGGTCGATTCTCAACAACAGTAGAGGAACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

225

Amino Acids

24.39

Weight (kDa)

10.09

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 148 - 216 1.3e-17 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27990
fragaria_vesca FvH4_6g37080
malus_domestica MD09G1163500.v1.1 MD17G1164100.v1.1
prunus_persica Prupe.3G021000_v2.0.a1
pyrus_communis pycom09g08100 pycom17g15710
rosa_chinensis RchiOBHm_Chr2g0149631
rosa_laevigata RLG00000020432
rosa_multiflora Rmu_sc0014307.1_g000002
rosa_roxburghii Rroxscaffold_2G00097850
rosa_rugosa Rorug02G0413600
rosa_samantha Rh2AG474000 Rh2BG485800 Rh2CG459900 Rh2DG495100
rosa_wichuraiana Rw2G038640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 632
AccBSI CCGCTC 1 cut(s) 390
AciI CCGC 8 cut(s) 279, 345, 348, 368, 382, 390, 565, 578
AclWI GGATC 3 cut(s) 336, 349, 539
AcyI GRCGYC 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 338, 351
AgsI TTSAA 3 cut(s) 109, 400, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 2 cut(s) 26, 486
AluI AGCT 2 cut(s) 26, 486
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 3 cut(s) 336, 349, 539
Ama87I CYCGRG 2 cut(s) 385, 638
AoxI GGCC 1 cut(s) 353
ApaI GGGCCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 6 cut(s) 329, 353, 354, 379, 508, 535
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 163, 244
AvaI CYCGRG 2 cut(s) 385, 638
AvaII GGWCC 4 cut(s) 329, 379, 508, 535
BaeGI GKGCMC 2 cut(s) 357, 635
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 409
BccI CCATC 6 cut(s) 59, 214, 226, 266, 344, 460
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 451
BisI GCNGC 4 cut(s) 279, 348, 369, 423
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 4 cut(s) 280, 349, 370, 424
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 4 cut(s) 329, 379, 508, 535
BmeT110I CYCGRG 2 cut(s) 385, 638
BmgT120I GGNCC 6 cut(s) 329, 353, 354, 379, 508, 535
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 416
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 352
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 3 cut(s) 503, 594, 637
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 351
BseDI CCNNGG 3 cut(s) 503, 594, 637
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 2 cut(s) 338, 351
BseMII CTCAG 5 cut(s) 115, 163, 224, 388, 496
BseSI GKGCMC 2 cut(s) 357, 635
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 1 cut(s) 632
BsiHKCI CYCGRG 2 cut(s) 385, 638
BsiSI CCGG 2 cut(s) 351, 426
BslFI GGGAC 3 cut(s) 392, 521, 548
BslI CCNNNNNNNGG 2 cut(s) 338, 351
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 3 cut(s) 392, 521, 548
BsnI GGCC 1 cut(s) 355
BsoBI CYCGRG 2 cut(s) 385, 638
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 357, 635
Bsp143I GATC 2 cut(s) 341, 544
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 8 cut(s) 279, 345, 348, 368, 382, 390, 565, 578
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 5 cut(s) 114, 162, 223, 387, 495
BspPI GGATC 3 cut(s) 336, 349, 539
BspT107I GGYRCC 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 390
BssECI CCNNGG 3 cut(s) 503, 594, 637
BssMI GATC 2 cut(s) 341, 544
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 503, 594
Bst4CI ACNGT 4 cut(s) 415, 455, 512, 659
Bst6I CTCTTC 2 cut(s) 365, 566
BstACI GRCGYC 1 cut(s) 17
BstDEI CTNAG 5 cut(s) 101, 149, 210, 374, 482
BstF5I GGATG 1 cut(s) 604
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 344, 547
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 341, 544
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 451
BstSLI GKGCMC 2 cut(s) 357, 635
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 460
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 6 cut(s) 329, 353, 354, 379, 508, 535
CseI GACGC 1 cut(s) 6
CviAII CATG 1 cut(s) 13
DdeI CTNAG 5 cut(s) 101, 149, 210, 374, 482
DpnI GATC 2 cut(s) 343, 546
DpnII GATC 2 cut(s) 341, 544
Eam1104I CTCTTC 2 cut(s) 365, 566
EarI CTCTTC 2 cut(s) 365, 566
EciI GGCGGA 2 cut(s) 334, 567
Eco130I CCWWGG 2 cut(s) 503, 594
Eco24I GRGCYC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 4 cut(s) 329, 379, 508, 535
Eco88I CYCGRG 2 cut(s) 385, 638
EcoO109I RGGNCCY 2 cut(s) 354, 535
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 503, 594
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 2 cut(s) 503, 594
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 56, 572
FaqI GGGAC 3 cut(s) 392, 521, 548
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 4 cut(s) 279, 348, 369, 423
FokI GGATG 1 cut(s) 611
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 4 cut(s) 279, 348, 369, 423
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 163
GluI GCNGC 4 cut(s) 279, 348, 369, 423
HaeIII GGCC 1 cut(s) 355
HapII CCGG 2 cut(s) 351, 426
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HinfI GANTC 3 cut(s) 105, 429, 646
HpaII CCGG 2 cut(s) 351, 426
HphI GGTGA 2 cut(s) 163, 244
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 4 cut(s) 104, 152, 329, 341
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 415, 455, 512, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 5 cut(s) 101, 149, 210, 374, 482
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 341, 544
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 4 cut(s) 361, 364, 439, 472
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 275
MalI GATC 2 cut(s) 343, 546
MbiI CCGCTC 1 cut(s) 390
MboI GATC 2 cut(s) 341, 544
MboII GAAGA 4 cut(s) 73, 253, 352, 553
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 2 cut(s) 357, 635
MluCI AATT 3 cut(s) 297, 323, 573
MlyI GAGTC 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 2 cut(s) 351, 426
MspR9I CCNGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 352
NdeII GATC 2 cut(s) 341, 544
NlaIII CATG 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 105, 646
PkrI GCNGC 4 cut(s) 280, 349, 370, 424
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PpuMI RGGWCCY 1 cut(s) 535
PshAI GACNNNNGTC 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 535
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 6 cut(s) 329, 353, 354, 379, 508, 535
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 486
SatI GCNGC 4 cut(s) 279, 348, 369, 423
Sau3AI GATC 2 cut(s) 341, 544
Sau96I GGNCC 6 cut(s) 329, 353, 354, 379, 508, 535
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 2 cut(s) 357, 635
SetI ASST 8 cut(s) 28, 44, 237, 409, 488, 540, 561, 596
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 4 cut(s) 329, 379, 508, 535
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 3 cut(s) 297, 323, 573
SsiI CCGC 8 cut(s) 279, 345, 348, 368, 382, 390, 565, 578
SspI AATATT 1 cut(s) 499
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 2 cut(s) 503, 594
TaaI ACNGT 4 cut(s) 415, 455, 512, 659
TaqI TCGA 3 cut(s) 444, 588, 644
TasI AATT 3 cut(s) 297, 323, 573
TauI GCSGC 3 cut(s) 281, 350, 371
TfiI GAWTC 2 cut(s) 105, 646
TscAI CASTG 1 cut(s) 460
TseI GCWGC 1 cut(s) 422
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 4 cut(s) 329, 379, 508, 535
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.